Result of FASTA (ccds) for
pF1KB3650
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3650, 478 aa
1>>>pF1KB3650 478 - 478 aa - 478 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1982+/-0.000795; mu= 15.9799+/- 0.048
mean_var=121.6050+/-23.868, 0's: 0 Z-trim(111.8): 32 B-trim: 50 in 2/50
Lambda= 0.116305
statistics sampled from 12639 (12670) to 12639 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.389), width: 16
Scan time: 3.400
The best scores are: opt bits E(32554)
CCDS11229.1 VTN gene_id:7448|Hs108|chr17 ( 478) 3399 581.2 8e-166
CCDS44287.1 PRG4 gene_id:10216|Hs108|chr1 (1311) 446 86.1 2.4e-16
CCDS81411.1 PRG4 gene_id:10216|Hs108|chr1 (1361) 446 86.2 2.5e-16
CCDS44288.1 PRG4 gene_id:10216|Hs108|chr1 (1363) 446 86.2 2.5e-16
CCDS1369.1 PRG4 gene_id:10216|Hs108|chr1 (1404) 446 86.2 2.5e-16
>>CCDS11229.1 VTN gene_id:7448|Hs108|chr17 (478 aa)
initn: 3399 init1: 3399 opt: 3399 Z-score: 3090.5 bits: 581.2 E(32554): 8e-166
Smith-Waterman score: 3399; 100.0% identity (100.0% similar) in 478 aa overlap (1-478:1-478)
10 20 30 40 50 60
pF1KB3 MAPLRPLLILALLAWVALADQESCKGRCTEGFNVDKKCQCDELCSYYQSCCTDYTAECKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAPLRPLLILALLAWVALADQESCKGRCTEGFNVDKKCQCDELCSYYQSCCTDYTAECKP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QVTRGDVFTMPEDEYTVYDDGEEKNNATVHEQVGGPSLTSDLQAQSKGNPEQTPVLKPEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QVTRGDVFTMPEDEYTVYDDGEEKNNATVHEQVGGPSLTSDLQAQSKGNPEQTPVLKPEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 EAPAPEVGASKPEGIDSRPETLHPGRPQPPAEEELCSGKPFDAFTDLKNGSLFAFRGQYC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EAPAPEVGASKPEGIDSRPETLHPGRPQPPAEEELCSGKPFDAFTDLKNGSLFAFRGQYC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 YELDEKAVRPGYPKLIRDVWGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YELDEKAVRPGYPKLIRDVWGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 RNISDGFDGIPDNVDAALALPAHSYSGRERVYFFKGKQYWEYQFQHQPSQEECEGSSLSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RNISDGFDGIPDNVDAALALPAHSYSGRERVYFFKGKQYWEYQFQHQPSQEECEGSSLSA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 VFEHFAMMQRDSWEDIFELLFWGRTSAGTRQPQFISRDWHGVPGQVDAAMAGRIYISGMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VFEHFAMMQRDSWEDIFELLFWGRTSAGTRQPQFISRDWHGVPGQVDAAMAGRIYISGMA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 PRPSLAKKQRFRHRNRKGYRSQRGHSRGRNQNSRRPSRATWLSLFSSEESNLGANNYDDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PRPSLAKKQRFRHRNRKGYRSQRGHSRGRNQNSRRPSRATWLSLFSSEESNLGANNYDDY
370 380 390 400 410 420
430 440 450 460 470
pF1KB3 RMDWLVPATCEPIQSVFFFSGDKYYRVNLRTRRVDTVDPPYPRSIAQYWLGCPAPGHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RMDWLVPATCEPIQSVFFFSGDKYYRVNLRTRRVDTVDPPYPRSIAQYWLGCPAPGHL
430 440 450 460 470
>>CCDS44287.1 PRG4 gene_id:10216|Hs108|chr1 (1311 aa)
initn: 579 init1: 293 opt: 446 Z-score: 407.0 bits: 86.1 E(32554): 2.4e-16
Smith-Waterman score: 446; 36.4% identity (61.9% similar) in 247 aa overlap (59-295:952-1190)
30 40 50 60 70 80
pF1KB3 TEGFNVDKKCQCDELCSYYQSCCTDYTAECKPQVT---RGDVFTMPEDEYTVYDDGEEKN
::..: : . :::: . : .
CCDS44 KATTPKPQKPTKAPKKPTSTKKPKTMPRVRKPKTTPTPRKMTSTMPELNPTSRIAEAMLQ
930 940 950 960 970 980
90 100 110 120 130 140
pF1KB3 NATVHEQVGGPSLTS-DLQAQSKGNPE-QTPVLKPEEEAPAPEVGASKPEGIDSRPETLH
..: .:. . .:. . .... :. : .:: . . .. ::: :. .: :.. .
CCDS44 TTTRPNQTPNSKLVEVNPKSEDAGGAEGETPHMLLRPHVFMPEV---TPD-MDYLPRVPN
990 1000 1010 1020 1030
150 160 170 180 190
pF1KB3 PG---RPQPPAEEELCSGKPFDAFTDLKNGSLFAFRGQYCYELDEKAVRPGYP-KLIRDV
: :. : ..:.::: :..: :.::.: ::::.: . :. : : . : .:
CCDS44 QGIIINPMLSDETNICNGKPVDGLTTLRNGTLVAFRGHYFWMLS--PFSPPSPARRITEV
1040 1050 1060 1070 1080 1090
200 210 220 230 240 250
pF1KB3 WGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYPRNISDGFDGIPDNVDAALA
::: .:::..::: ::.:::..:: :::::: . . : ::. : :: :. .. :::.
CCDS44 WGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDIKDAGYPKPIFKGFGGLTGQIVAALS
1100 1110 1120 1130 1140 1150
260 270 280 290 300 310
pF1KB3 LPAHSYSGRERVYFFK-GKQYWEYQFQHQPSQEECEGSSLSAVFEHFAMMQRDSWEDIFE
:. . : ::::: : . .: ....: :. : :
CCDS44 T-AKYKNWPESVYFFKRGGSIQQYIYKQEPVQK-CPGRRPALNYPVYGETTQVRRRRFER
1160 1170 1180 1190 1200 1210
320 330 340 350 360 370
pF1KB3 LLFWGRTSAGTRQPQFISRDWHGVPGQVDAAMAGRIYISGMAPRPSLAKKQRFRHRNRKG
CCDS44 AIGPSQTHTIRIQYSPARLAYQDKGVLHNEVKVSILWRGLPNVVTSAISLPNIRKPDGYD
1220 1230 1240 1250 1260 1270
>>CCDS81411.1 PRG4 gene_id:10216|Hs108|chr1 (1361 aa)
initn: 730 init1: 293 opt: 446 Z-score: 406.8 bits: 86.2 E(32554): 2.5e-16
Smith-Waterman score: 446; 36.4% identity (61.9% similar) in 247 aa overlap (59-295:1002-1240)
30 40 50 60 70 80
pF1KB3 TEGFNVDKKCQCDELCSYYQSCCTDYTAECKPQVT---RGDVFTMPEDEYTVYDDGEEKN
::..: : . :::: . : .
CCDS81 KATTPKPQKPTKAPKKPTSTKKPKTMPRVRKPKTTPTPRKMTSTMPELNPTSRIAEAMLQ
980 990 1000 1010 1020 1030
90 100 110 120 130 140
pF1KB3 NATVHEQVGGPSLTS-DLQAQSKGNPE-QTPVLKPEEEAPAPEVGASKPEGIDSRPETLH
..: .:. . .:. . .... :. : .:: . . .. ::: :. .: :.. .
CCDS81 TTTRPNQTPNSKLVEVNPKSEDAGGAEGETPHMLLRPHVFMPEV---TPD-MDYLPRVPN
1040 1050 1060 1070 1080
150 160 170 180 190
pF1KB3 PG---RPQPPAEEELCSGKPFDAFTDLKNGSLFAFRGQYCYELDEKAVRPGYP-KLIRDV
: :. : ..:.::: :..: :.::.: ::::.: . :. : : . : .:
CCDS81 QGIIINPMLSDETNICNGKPVDGLTTLRNGTLVAFRGHYFWMLS--PFSPPSPARRITEV
1090 1100 1110 1120 1130 1140
200 210 220 230 240 250
pF1KB3 WGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYPRNISDGFDGIPDNVDAALA
::: .:::..::: ::.:::..:: :::::: . . : ::. : :: :. .. :::.
CCDS81 WGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDIKDAGYPKPIFKGFGGLTGQIVAALS
1150 1160 1170 1180 1190 1200
260 270 280 290 300 310
pF1KB3 LPAHSYSGRERVYFFK-GKQYWEYQFQHQPSQEECEGSSLSAVFEHFAMMQRDSWEDIFE
:. . : ::::: : . .: ....: :. : :
CCDS81 T-AKYKNWPESVYFFKRGGSIQQYIYKQEPVQK-CPGRRPALNYPVYGETTQVRRRRFER
1210 1220 1230 1240 1250 1260
320 330 340 350 360 370
pF1KB3 LLFWGRTSAGTRQPQFISRDWHGVPGQVDAAMAGRIYISGMAPRPSLAKKQRFRHRNRKG
CCDS81 AIGPSQTHTIRIQYSPARLAYQDKGVLHNEVKVSILWRGLPNVVTSAISLPNIRKPDGYD
1270 1280 1290 1300 1310 1320
>>CCDS44288.1 PRG4 gene_id:10216|Hs108|chr1 (1363 aa)
initn: 654 init1: 293 opt: 446 Z-score: 406.7 bits: 86.2 E(32554): 2.5e-16
Smith-Waterman score: 446; 36.4% identity (61.9% similar) in 247 aa overlap (59-295:1004-1242)
30 40 50 60 70 80
pF1KB3 TEGFNVDKKCQCDELCSYYQSCCTDYTAECKPQVT---RGDVFTMPEDEYTVYDDGEEKN
::..: : . :::: . : .
CCDS44 KATTPKPQKPTKAPKKPTSTKKPKTMPRVRKPKTTPTPRKMTSTMPELNPTSRIAEAMLQ
980 990 1000 1010 1020 1030
90 100 110 120 130 140
pF1KB3 NATVHEQVGGPSLTS-DLQAQSKGNPE-QTPVLKPEEEAPAPEVGASKPEGIDSRPETLH
..: .:. . .:. . .... :. : .:: . . .. ::: :. .: :.. .
CCDS44 TTTRPNQTPNSKLVEVNPKSEDAGGAEGETPHMLLRPHVFMPEV---TPD-MDYLPRVPN
1040 1050 1060 1070 1080
150 160 170 180 190
pF1KB3 PG---RPQPPAEEELCSGKPFDAFTDLKNGSLFAFRGQYCYELDEKAVRPGYP-KLIRDV
: :. : ..:.::: :..: :.::.: ::::.: . :. : : . : .:
CCDS44 QGIIINPMLSDETNICNGKPVDGLTTLRNGTLVAFRGHYFWMLS--PFSPPSPARRITEV
1090 1100 1110 1120 1130 1140
200 210 220 230 240 250
pF1KB3 WGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYPRNISDGFDGIPDNVDAALA
::: .:::..::: ::.:::..:: :::::: . . : ::. : :: :. .. :::.
CCDS44 WGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDIKDAGYPKPIFKGFGGLTGQIVAALS
1150 1160 1170 1180 1190 1200
260 270 280 290 300 310
pF1KB3 LPAHSYSGRERVYFFK-GKQYWEYQFQHQPSQEECEGSSLSAVFEHFAMMQRDSWEDIFE
:. . : ::::: : . .: ....: :. : :
CCDS44 T-AKYKNWPESVYFFKRGGSIQQYIYKQEPVQK-CPGRRPALNYPVYGETTQVRRRRFER
1210 1220 1230 1240 1250 1260
320 330 340 350 360 370
pF1KB3 LLFWGRTSAGTRQPQFISRDWHGVPGQVDAAMAGRIYISGMAPRPSLAKKQRFRHRNRKG
CCDS44 AIGPSQTHTIRIQYSPARLAYQDKGVLHNEVKVSILWRGLPNVVTSAISLPNIRKPDGYD
1270 1280 1290 1300 1310 1320
>>CCDS1369.1 PRG4 gene_id:10216|Hs108|chr1 (1404 aa)
initn: 730 init1: 293 opt: 446 Z-score: 406.6 bits: 86.2 E(32554): 2.5e-16
Smith-Waterman score: 446; 36.4% identity (61.9% similar) in 247 aa overlap (59-295:1045-1283)
30 40 50 60 70 80
pF1KB3 TEGFNVDKKCQCDELCSYYQSCCTDYTAECKPQVT---RGDVFTMPEDEYTVYDDGEEKN
::..: : . :::: . : .
CCDS13 KATTPKPQKPTKAPKKPTSTKKPKTMPRVRKPKTTPTPRKMTSTMPELNPTSRIAEAMLQ
1020 1030 1040 1050 1060 1070
90 100 110 120 130 140
pF1KB3 NATVHEQVGGPSLTS-DLQAQSKGNPE-QTPVLKPEEEAPAPEVGASKPEGIDSRPETLH
..: .:. . .:. . .... :. : .:: . . .. ::: :. .: :.. .
CCDS13 TTTRPNQTPNSKLVEVNPKSEDAGGAEGETPHMLLRPHVFMPEV---TPD-MDYLPRVPN
1080 1090 1100 1110 1120 1130
150 160 170 180 190
pF1KB3 PG---RPQPPAEEELCSGKPFDAFTDLKNGSLFAFRGQYCYELDEKAVRPGYP-KLIRDV
: :. : ..:.::: :..: :.::.: ::::.: . :. : : . : .:
CCDS13 QGIIINPMLSDETNICNGKPVDGLTTLRNGTLVAFRGHYFWMLS--PFSPPSPARRITEV
1140 1150 1160 1170 1180
200 210 220 230 240 250
pF1KB3 WGIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYPRNISDGFDGIPDNVDAALA
::: .:::..::: ::.:::..:: :::::: . . : ::. : :: :. .. :::.
CCDS13 WGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDIKDAGYPKPIFKGFGGLTGQIVAALS
1190 1200 1210 1220 1230 1240
260 270 280 290 300 310
pF1KB3 LPAHSYSGRERVYFFK-GKQYWEYQFQHQPSQEECEGSSLSAVFEHFAMMQRDSWEDIFE
:. . : ::::: : . .: ....: :. : :
CCDS13 T-AKYKNWPESVYFFKRGGSIQQYIYKQEPVQK-CPGRRPALNYPVYGETTQVRRRRFER
1250 1260 1270 1280 1290 1300
320 330 340 350 360 370
pF1KB3 LLFWGRTSAGTRQPQFISRDWHGVPGQVDAAMAGRIYISGMAPRPSLAKKQRFRHRNRKG
CCDS13 AIGPSQTHTIRIQYSPARLAYQDKGVLHNEVKVSILWRGLPNVVTSAISLPNIRKPDGYD
1310 1320 1330 1340 1350 1360
478 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:17:14 2016 done: Sat Nov 5 05:17:15 2016
Total Scan time: 3.400 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]