FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3634, 333 aa
  1>>>pF1KB3634 333 - 333 aa - 333 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5439+/-0.000407; mu= 14.7686+/- 0.025
 mean_var=68.6128+/-14.006, 0's: 0 Z-trim(111.2): 7  B-trim: 138 in 1/50
 Lambda= 0.154836
 statistics sampled from 19682 (19684) to 19682 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.599), E-opt: 0.2 (0.231), width:  16
 Scan time:  5.940

The best scores are:                                      opt bits E(85289)
NP_000117 (OMIM: 231680,608053) electron transfer  ( 333) 2109 480.3 2.4e-135
NP_001121188 (OMIM: 231680,608053) electron transf ( 284) 1720 393.4  3e-109


>>NP_000117 (OMIM: 231680,608053) electron transfer flav  (333 aa)
 initn: 2109 init1: 2109 opt: 2109  Z-score: 2550.8  bits: 480.3 E(85289): 2.4e-135
Smith-Waterman score: 2109; 100.0% identity (100.0% similar) in 333 aa overlap (1-333:1-333)

               10        20        30        40        50        60
pF1KB3 MFRAAAPGQLRRAASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MFRAAAPGQLRRAASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 DKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 DKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 PRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 GSASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GSASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN
              250       260       270       280       290       300

              310       320       330   
pF1KB3 KDPEAPIFQVADYGIVADLFKVVPEMTEILKKK
       :::::::::::::::::::::::::::::::::
NP_000 KDPEAPIFQVADYGIVADLFKVVPEMTEILKKK
              310       320       330   

>>NP_001121188 (OMIM: 231680,608053) electron transfer f  (284 aa)
 initn: 1720 init1: 1720 opt: 1720  Z-score: 2082.3  bits: 393.4 E(85289): 3e-109
Smith-Waterman score: 1720; 100.0% identity (100.0% similar) in 271 aa overlap (63-333:14-284)

             40        50        60        70        80        90  
pF1KB3 LAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGIAKVLVAQHDVYKGLLPEEL
                                     ::::::::::::::::::::::::::::::
NP_001                  MFRAAAPGQLRRAVAQDLCKVAGIAKVLVAQHDVYKGLLPEEL
                                10        20        30        40   

            100       110       120       130       140       150  
pF1KB3 TPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSPDTFVRTIYAGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSPDTFVRTIYAGN
            50        60        70        80        90       100   

            160       170       180       190       200       210  
pF1KB3 ALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKASSTSPVEISEWLDQKLTKSDRPEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKASSTSPVEISEWLDQKLTKSDRPEL
           110       120       130       140       150       160   

            220       230       240       250       260       270  
pF1KB3 TGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPNDMQVGQTGKIVAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPNDMQVGQTGKIVAP
           170       180       190       200       210       220   

            280       290       300       310       320       330  
pF1KB3 ELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILKK
           230       240       250       260       270       280   

        
pF1KB3 K
       :
NP_001 K
        




333 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:16:38 2016 done: Sat Nov  5 05:16:39 2016
 Total Scan time:  5.940 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]