Result of FASTA (ccds) for
pF1KB3630
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3630, 193 aa
1>>>pF1KB3630 193 - 193 aa - 193 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2539+/-0.000828; mu= 13.7089+/- 0.051
mean_var=76.9560+/-15.259, 0's: 0 Z-trim(109.0): 180 B-trim: 309 in 1/51
Lambda= 0.146202
statistics sampled from 10392 (10598) to 10392 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.326), width: 16
Scan time: 2.010
The best scores are: opt bits E(32554)
CCDS854.1 RHOC gene_id:389|Hs108|chr1 ( 193) 1305 284.2 3.5e-77
CCDS2795.1 RHOA gene_id:387|Hs108|chr3 ( 193) 1222 266.7 6.5e-72
CCDS1699.1 RHOB gene_id:388|Hs108|chr2 ( 196) 1114 243.9 4.7e-65
CCDS82775.1 RHOA gene_id:387|Hs108|chr3 ( 187) 936 206.3 9.1e-54
CCDS5348.1 RAC1 gene_id:5879|Hs108|chr7 ( 192) 726 162.0 2e-40
CCDS7748.1 RHOG gene_id:391|Hs108|chr11 ( 191) 713 159.3 1.3e-39
CCDS13945.1 RAC2 gene_id:5880|Hs108|chr22 ( 192) 702 157.0 6.7e-39
CCDS11798.1 RAC3 gene_id:5881|Hs108|chr17 ( 192) 695 155.5 1.9e-38
CCDS221.1 CDC42 gene_id:998|Hs108|chr1 ( 191) 690 154.4 3.9e-38
CCDS222.1 CDC42 gene_id:998|Hs108|chr1 ( 191) 684 153.2 9.3e-38
CCDS8155.1 RHOD gene_id:29984|Hs108|chr11 ( 210) 671 150.5 6.7e-37
CCDS33191.1 RHOQ gene_id:23433|Hs108|chr2 ( 205) 670 150.3 7.6e-37
CCDS2190.1 RND3 gene_id:390|Hs108|chr2 ( 244) 658 147.8 5e-36
CCDS11452.1 RND2 gene_id:8153|Hs108|chr17 ( 227) 656 147.3 6.3e-36
CCDS9222.1 RHOF gene_id:54509|Hs108|chr12 ( 211) 644 144.8 3.5e-35
CCDS9757.1 RHOJ gene_id:57381|Hs108|chr14 ( 214) 636 143.1 1.1e-34
CCDS1575.1 RHOU gene_id:58480|Hs108|chr1 ( 258) 605 136.6 1.2e-32
CCDS8771.1 RND1 gene_id:27289|Hs108|chr12 ( 232) 546 124.1 6.2e-29
CCDS10068.1 RHOV gene_id:171177|Hs108|chr15 ( 236) 544 123.7 8.4e-29
CCDS3458.1 RHOH gene_id:399|Hs108|chr4 ( 191) 522 119.0 1.8e-27
CCDS5349.1 RAC1 gene_id:5879|Hs108|chr7 ( 211) 378 88.7 2.7e-18
CCDS6034.1 RHOBTB2 gene_id:23221|Hs108|chr8 ( 727) 354 84.0 2.3e-16
CCDS55211.1 RHOBTB2 gene_id:23221|Hs108|chr8 ( 734) 354 84.0 2.3e-16
CCDS55210.1 RHOBTB2 gene_id:23221|Hs108|chr8 ( 749) 354 84.0 2.4e-16
CCDS82774.1 RHOA gene_id:387|Hs108|chr3 ( 90) 342 80.8 2.7e-16
CCDS7261.1 RHOBTB1 gene_id:9886|Hs108|chr10 ( 696) 348 82.7 5.4e-16
CCDS31613.1 RAB1B gene_id:81876|Hs108|chr11 ( 201) 298 71.8 3.1e-13
CCDS46306.1 RAB1A gene_id:5861|Hs108|chr2 ( 205) 297 71.6 3.7e-13
CCDS76691.1 RAB15 gene_id:376267|Hs108|chr14 ( 212) 283 68.6 2.9e-12
CCDS1058.1 RAB13 gene_id:5872|Hs108|chr1 ( 203) 280 68.0 4.4e-12
CCDS8264.1 RAB30 gene_id:27314|Hs108|chr11 ( 203) 277 67.4 6.8e-12
CCDS1720.1 RAB10 gene_id:10890|Hs108|chr2 ( 200) 276 67.1 7.7e-12
CCDS10183.1 RAB8B gene_id:51762|Hs108|chr15 ( 207) 275 66.9 9.2e-12
CCDS9003.1 RAB21 gene_id:23011|Hs108|chr12 ( 225) 274 66.8 1.1e-11
CCDS41846.1 RAB35 gene_id:11021|Hs108|chr12 ( 201) 272 66.3 1.4e-11
CCDS14766.1 RAB39B gene_id:116442|Hs108|chrX ( 213) 271 66.1 1.7e-11
CCDS6175.1 RAB2A gene_id:5862|Hs108|chr8 ( 212) 269 65.7 2.2e-11
CCDS12339.1 RAB8A gene_id:4218|Hs108|chr19 ( 207) 268 65.5 2.6e-11
CCDS73330.1 RHOD gene_id:29984|Hs108|chr11 ( 144) 266 64.9 2.6e-11
CCDS11703.1 RAB37 gene_id:326624|Hs108|chr17 ( 216) 268 65.5 2.6e-11
CCDS2131.1 RALB gene_id:5899|Hs108|chr2 ( 206) 264 64.6 4.6e-11
CCDS82198.1 RAB37 gene_id:326624|Hs108|chr17 ( 196) 263 64.4 5.1e-11
CCDS10460.1 RAB26 gene_id:25837|Hs108|chr16 ( 256) 264 64.7 5.4e-11
CCDS32722.1 RAB37 gene_id:326624|Hs108|chr17 ( 223) 263 64.4 5.6e-11
CCDS54161.1 RAB37 gene_id:326624|Hs108|chr17 ( 228) 263 64.4 5.7e-11
>>CCDS854.1 RHOC gene_id:389|Hs108|chr1 (193 aa)
initn: 1305 init1: 1305 opt: 1305 Z-score: 1499.2 bits: 284.2 E(32554): 3.5e-77
Smith-Waterman score: 1305; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193)
10 20 30 40 50 60
pF1KB3 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ
130 140 150 160 170 180
190
pF1KB3 VRKNKRRRGCPIL
:::::::::::::
CCDS85 VRKNKRRRGCPIL
190
>>CCDS2795.1 RHOA gene_id:387|Hs108|chr3 (193 aa)
initn: 1222 init1: 1222 opt: 1222 Z-score: 1404.6 bits: 266.7 E(32554): 6.5e-72
Smith-Waterman score: 1222; 91.7% identity (98.4% similar) in 193 aa overlap (1-193:1-193)
10 20 30 40 50 60
pF1KB3 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT
::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::
CCDS27 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ
::.::::::::::::::::. ::::::::::.::::.:::::::.::::::::::::.::
CCDS27 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ
130 140 150 160 170 180
190
pF1KB3 VRKNKRRRGCPIL
.:..:.. :: .:
CCDS27 ARRGKKKSGCLVL
190
>>CCDS1699.1 RHOB gene_id:388|Hs108|chr2 (196 aa)
initn: 1127 init1: 1107 opt: 1114 Z-score: 1281.4 bits: 243.9 E(32554): 4.7e-65
Smith-Waterman score: 1114; 85.8% identity (95.3% similar) in 190 aa overlap (1-190:1-189)
10 20 30 40 50 60
pF1KB3 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT
:::::::::.::::::::::::::::::.:::::::::::::.:::::::::::::::::
CCDS16 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
:::::::::::::::::::::::::.:::::::::::::.:::::::::::::::.::::
CCDS16 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ
::.:::.: :::.:::::::...:: :: ::.:. ::::::::::::::::: ::::.::
CCDS16 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ
130 140 150 160 170 180
190
pF1KB3 VRKNKRRRGCPIL
: ... ::
CCDS16 KRYGSQN-GCINCCKVL
190
>>CCDS82775.1 RHOA gene_id:387|Hs108|chr3 (187 aa)
initn: 936 init1: 936 opt: 936 Z-score: 1078.8 bits: 206.3 E(32554): 9.1e-54
Smith-Waterman score: 936; 98.6% identity (100.0% similar) in 138 aa overlap (1-138:1-138)
10 20 30 40 50 60
pF1KB3 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT
::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::
CCDS82 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ
::.:::::::::::::::
CCDS82 LRNDEHTRRELAKMKQEPHCVARLECCGTILAQLQPPPPRFKRFPCLSLLSSWGYRRPLP
130 140 150 160 170 180
>>CCDS5348.1 RAC1 gene_id:5879|Hs108|chr7 (192 aa)
initn: 740 init1: 696 opt: 726 Z-score: 839.2 bits: 162.0 E(32554): 2e-40
Smith-Waterman score: 726; 57.7% identity (76.8% similar) in 194 aa overlap (1-193:1-192)
10 20 30 40 50 60
pF1KB3 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT
: :: : :.::::: ::::::: .. . :: :.::::.:: :.. :::: :.:.::::
CCDS53 MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
:::::::::::::::.:::.:.:::. :: :.::. :: :::.: :::.::::::.: :
CCDS53 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ
::.:. : ..: . : :. .: ::..:.: :::::: :..:.. ::. : :: :
CCDS53 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC
120 130 140 150 160 170
190
pF1KB3 VRK-NKRRRGCPIL
.::.: : .:
CCDS53 PPPVKKRKRKCLLL
180 190
>>CCDS7748.1 RHOG gene_id:391|Hs108|chr11 (191 aa)
initn: 719 init1: 700 opt: 713 Z-score: 824.4 bits: 159.3 E(32554): 1.3e-39
Smith-Waterman score: 713; 56.1% identity (77.0% similar) in 187 aa overlap (7-193:5-191)
10 20 30 40 50 60
pF1KB3 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT
: :.::::: ::::::: .. . ::. :.::::.:: :. :::. :.: ::::
CCDS77 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDT
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
::::.::::: ::::.:.:...:::: :: : ::. .:: ::: : ::.:::.:::.:::
CCDS77 AGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKD
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ
:: . : :.: .. : :. ..:. .:..: : :::::: ..::.::: :.:: :.
CCDS77 LRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLN
120 130 140 150 160 170
190
pF1KB3 VRKNKRRRGCPIL
:: :.: .:
CCDS77 PTPIKRGRSCILL
180 190
>>CCDS13945.1 RAC2 gene_id:5880|Hs108|chr22 (192 aa)
initn: 715 init1: 672 opt: 702 Z-score: 811.9 bits: 157.0 E(32554): 6.7e-39
Smith-Waterman score: 702; 54.6% identity (77.3% similar) in 194 aa overlap (1-193:1-192)
10 20 30 40 50 60
pF1KB3 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT
: :: : :.::::: ::::::: .. . :: :.::::.:: :.. ::.: :.:.::::
CCDS13 MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDT
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
:::::::::::::::.:::.:.:::. :: : ::. :: :::.: ::..::::::.: :
CCDS13 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLD
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ
::.:. : ..: . : :. .: .:..:.. :::::: :..:.. ::. : :: :
CCDS13 LRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLC
120 130 140 150 160 170
190
pF1KB3 VRKNKR-RRGCPIL
. ... .:.: .:
CCDS13 PQPTRQQKRACSLL
180 190
>>CCDS11798.1 RAC3 gene_id:5881|Hs108|chr17 (192 aa)
initn: 703 init1: 678 opt: 695 Z-score: 803.9 bits: 155.5 E(32554): 1.9e-38
Smith-Waterman score: 695; 54.6% identity (75.0% similar) in 196 aa overlap (1-193:1-192)
10 20 30 40 50 60
pF1KB3 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT
: :: : :.::::: ::::::: .. . :: :.::::.:: :.. :::: :.:.::::
CCDS11 MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
:::::::::::::::.:::.:.:::. :: :.::. :: :::.: ::..::.:::.: :
CCDS11 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLD
60 70 80 90 100 110
130 140 150 160 170
pF1KB3 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL-
::.:. : ..: : :. .: :: .:.. :::::: :..:.. ::. : :: :
CCDS11 LRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLC
120 130 140 150 160 170
180 190
pF1KB3 --QVRKNKRRRGCPIL
:.: .. : ..
CCDS11 PPPVKKPGKK--CTVF
180 190
>>CCDS221.1 CDC42 gene_id:998|Hs108|chr1 (191 aa)
initn: 674 init1: 655 opt: 690 Z-score: 798.2 bits: 154.4 E(32554): 3.9e-38
Smith-Waterman score: 690; 52.4% identity (78.6% similar) in 187 aa overlap (7-193:5-191)
10 20 30 40 50 60
pF1KB3 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT
: :.::::: ::::::: .. ..:: ::::::.:: . . . :. :.:.::
CCDS22 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
:::::::::::::::.:::.:.:::. ::.:.::. :::.::. : ::..:..:::.. :
CCDS22 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ
::.: : ..::: ::.:. : .. .: ..: :.:::: :..:...::. : :.:.
CCDS22 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE
120 130 140 150 160 170
190
pF1KB3 VRKNKRRRGCPIL
. :. : : .:
CCDS22 PPEPKKSRRCVLL
180 190
>>CCDS222.1 CDC42 gene_id:998|Hs108|chr1 (191 aa)
initn: 673 init1: 654 opt: 684 Z-score: 791.4 bits: 153.2 E(32554): 9.3e-38
Smith-Waterman score: 684; 51.9% identity (79.1% similar) in 187 aa overlap (7-193:5-191)
10 20 30 40 50 60
pF1KB3 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT
: :.::::: ::::::: .. ..:: ::::::.:: . . . :. :.:.::
CCDS22 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
:::::::::::::::.:::.:.:::. ::.:.::. :::.::. : ::..:..:::.. :
CCDS22 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ
::.: : ..::: ::.:. : .. .: ..: :.:::: :..:...::. : :.:.
CCDS22 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALE
120 130 140 150 160 170
190
pF1KB3 VRKNKRRRGCPIL
... .: : :.
CCDS22 PPETQPKRKCCIF
180 190
193 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:15:25 2016 done: Sat Nov 5 05:15:25 2016
Total Scan time: 2.010 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]