Result of FASTA (ccds) for
pF1KB3618
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3618, 295 aa
1>>>pF1KB3618 295 - 295 aa - 295 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.8781+/-0.00086; mu= -3.8126+/- 0.052
mean_var=244.3674+/-48.493, 0's: 0 Z-trim(116.1): 10 B-trim: 0 in 0/54
Lambda= 0.082045
statistics sampled from 16717 (16724) to 16717 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.822), E-opt: 0.2 (0.514), width: 16
Scan time: 3.110
The best scores are: opt bits E(32554)
CCDS11585.1 HLF gene_id:3131|Hs108|chr17 ( 295) 2029 252.2 3.5e-67
CCDS82164.1 HLF gene_id:3131|Hs108|chr17 ( 210) 1438 182.1 3e-46
CCDS46716.1 TEF gene_id:7008|Hs108|chr22 ( 273) 1002 130.6 1.3e-30
CCDS14014.1 TEF gene_id:7008|Hs108|chr22 ( 303) 976 127.5 1.2e-29
CCDS12728.1 DBP gene_id:1628|Hs108|chr19 ( 325) 852 112.9 3.3e-25
>>CCDS11585.1 HLF gene_id:3131|Hs108|chr17 (295 aa)
initn: 2029 init1: 2029 opt: 2029 Z-score: 1319.7 bits: 252.2 E(32554): 3.5e-67
Smith-Waterman score: 2029; 100.0% identity (100.0% similar) in 295 aa overlap (1-295:1-295)
10 20 30 40 50 60
pF1KB3 MEKMSRPLPLNPTFIPPPYGVLRSLLENPLKLPLHHEDAFSKDKDKEKKLDDESNSPTVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEKMSRPLPLNPTFIPPPYGVLRSLLENPLKLPLHHEDAFSKDKDKEKKLDDESNSPTVP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QSAFLGPTLWDKTLPYDGDTFQLEYMDLEEFLSENGIPPSPSQHDHSPHPPGLQPASSAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QSAFLGPTLWDKTLPYDGDTFQLEYMDLEEFLSENGIPPSPSQHDHSPHPPGLQPASSAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 PSVMDLSSRASAPLHPGIPSPNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYEPDPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PSVMDLSSRASAPLHPGIPSPNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYEPDPA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 DLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKARKVFIPDDLKDDKYWARRRKNNMAAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKARKVFIPDDLKDDKYWARRRKNNMAAK
190 200 210 220 230 240
250 260 270 280 290
pF1KB3 RSRDARRLKENQIAIRASFLEKENSALRQEVADLRKELGKCKNILAKYEARHGPL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RSRDARRLKENQIAIRASFLEKENSALRQEVADLRKELGKCKNILAKYEARHGPL
250 260 270 280 290
>>CCDS82164.1 HLF gene_id:3131|Hs108|chr17 (210 aa)
initn: 1438 init1: 1438 opt: 1438 Z-score: 943.7 bits: 182.1 E(32554): 3e-46
Smith-Waterman score: 1438; 100.0% identity (100.0% similar) in 210 aa overlap (86-295:1-210)
60 70 80 90 100 110
pF1KB3 SPTVPQSAFLGPTLWDKTLPYDGDTFQLEYMDLEEFLSENGIPPSPSQHDHSPHPPGLQP
::::::::::::::::::::::::::::::
CCDS82 MDLEEFLSENGIPPSPSQHDHSPHPPGLQP
10 20 30
120 130 140 150 160 170
pF1KB3 ASSAAPSVMDLSSRASAPLHPGIPSPNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ASSAAPSVMDLSSRASAPLHPGIPSPNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGY
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB3 EPDPADLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKARKVFIPDDLKDDKYWARRRKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EPDPADLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKARKVFIPDDLKDDKYWARRRKN
100 110 120 130 140 150
240 250 260 270 280 290
pF1KB3 NMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVADLRKELGKCKNILAKYEARHGPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVADLRKELGKCKNILAKYEARHGPL
160 170 180 190 200 210
>>CCDS46716.1 TEF gene_id:7008|Hs108|chr22 (273 aa)
initn: 978 init1: 732 opt: 1002 Z-score: 663.2 bits: 130.6 E(32554): 1.3e-30
Smith-Waterman score: 1002; 56.8% identity (79.1% similar) in 278 aa overlap (21-295:6-273)
10 20 30 40 50
pF1KB3 MEKMSRPLPLNPTFIPPPYGVLRSLLENPLKLPLHHEDAFSKDKDKEKKLDDESNSP-TV
::.::::. : : .. : :.: ::: .::. . :.
CCDS46 MDMPEVLKSLLEHSLPWPEKRTD---KEKGKEKLEEDEAAAASTM
10 20 30 40
60 70 80 90 100 110
pF1KB3 PQSAFLGPTLWDKTLPYDGDTFQLEYMDLEEFLSENGIPPSPSQHDHSPHPP--GLQPAS
:: : : .::::.::::..:.::::::.::: ::::: ::.. :. : :.
CCDS46 AVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAHNLLLPVAELEGKE
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB3 SAAPSVMDLSSRASAPLHPGIPSPNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYEP
::. :. . : ..: ..:. . .: : .:.:::::::. ..: :...:
CCDS46 SASSSTASPPSSSTAIFQPSETVSSTESS-------LEKERETPSPIDPNCVEVDVNFNP
110 120 130 140 150
180 190 200 210 220 230
pF1KB3 DPADLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKARKVFIPDDLKDDKYWARRRKNNM
:::::.:::.:: :.:.:::.::.::.::::::::::.:::.::. ::.:::.::.:::.
CCDS46 DPADLVLSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNV
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB3 AAKRSRDARRLKENQIAIRASFLEKENSALRQEVADLRKELGKCKNILAKYEARHGPL
::::::::::::::::.:::.::::::.::: :::.::::.::::.:..:::...:::
CCDS46 AAKRSRDARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL
220 230 240 250 260 270
>>CCDS14014.1 TEF gene_id:7008|Hs108|chr22 (303 aa)
initn: 961 init1: 732 opt: 976 Z-score: 645.9 bits: 127.5 E(32554): 1.2e-29
Smith-Waterman score: 995; 56.5% identity (79.5% similar) in 278 aa overlap (21-295:38-303)
10 20 30 40 50
pF1KB3 MEKMSRPLPLNPTFIPPPYGVLRSLLENPLKLPLHHEDAFSKDKDKEKKL
::..:.::: : .: ..:.: :::
CCDS14 KKPPVDPQAGPGPGPGRAAGERGLSGSFPLVLKKLMENP---P--REARLDKEKGKEKLE
10 20 30 40 50 60
60 70 80 90 100
pF1KB3 DDESNSP-TVPQSAFLGPTLWDKTLPYDGDTFQLEYMDLEEFLSENGIPPSPSQHDHSPH
.::. . :. :: : : .::::.::::..:.::::::.::: ::::: ::.. :.
CCDS14 EDEAAAASTMAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAHNLL
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB3 PP--GLQPASSAAPSVMDLSSRASAPLHPGIPSPNCMQSPIRPGQLLPANRNTPSPIDPD
: :. ::. :. . : ..: ..:. . .: : .:.:::::::.
CCDS14 LPVAELEGKESASSSTASPPSSSTAIFQPSETVSSTESS-------LEKERETPSPIDPN
130 140 150 160 170
170 180 190 200 210 220
pF1KB3 TIQVPVGYEPDPADLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKARKVFIPDDLKDDK
..: :...::::::.:::.:: :.:.:::.::.::.::::::::::.:::.::. ::.:
CCDS14 CVEVDVNFNPDPADLVLSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEK
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB3 YWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVADLRKELGKCKNILAK
::.::.:::.::::::::::::::::.:::.::::::.::: :::.::::.::::.:..:
CCDS14 YWTRRKKNNVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSK
240 250 260 270 280 290
290
pF1KB3 YEARHGPL
::...:::
CCDS14 YETKYGPL
300
>>CCDS12728.1 DBP gene_id:1628|Hs108|chr19 (325 aa)
initn: 847 init1: 673 opt: 852 Z-score: 566.1 bits: 112.9 E(32554): 3.3e-25
Smith-Waterman score: 854; 46.3% identity (67.3% similar) in 324 aa overlap (7-295:10-325)
10 20 30 40 50
pF1KB3 MEKMSRPLPL---NPTFIPPPYGVL---RSLLENPLKLPLHHEDAFSKDKDKEKKLD
: :: .:. :: :.: ::::.. : : . . . :.:... :
CCDS12 MARPVSDRTPAPLLLGGPAGTPPGGGALLGLRSLLQGTSK-PKEPASCLLKEKERKAALP
10 20 30 40 50
60 70 80
pF1KB3 D--------ESNSPT-------------------VPQSAFLGPTLWDKTLPYDGDTFQLE
:. .:. :: ..:.: ::..:::. :: .:
CCDS12 AATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPF-GD---VE
60 70 80 90 100 110
90 100 110 120 130 140
pF1KB3 YMDLEEFLSENGIPPSPSQHDH-SPHP-PGLQPASSAAPSVMDLSSRASAPLHPGIPSPN
:.::. :: :.:.:::: ::.: :. :: : .:. .: :.: : .
CCDS12 YVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARAAL
120 130 140 150 160 170
150 160 170 180 190 200
pF1KB3 CMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYEPDPADLALSSIPGQEMFDPRKRKFSE
: : : ..:.::::.::::..: . .::::::::::::::.: ::::...:::
CCDS12 GTASGHRAGL---TSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRRHRFSE
180 190 200 210 220 230
210 220 230 240 250 260
pF1KB3 EELKPQPMIKKARKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEK
:::::::..:::::. .:.. ::.:::.:: ::: ::::::::::::::::..::.::::
CCDS12 EELKPQPIMKKARKIQVPEEQKDEKYWSRRYKNNEAAKRSRDARRLKENQISVRAAFLEK
240 250 260 270 280 290
270 280 290
pF1KB3 ENSALRQEVADLRKELGKCKNILAKYEARHGPL
::. :::::. .:.::.. . .:..:.:.:: :
CCDS12 ENALLRQEVVAVRQELSHYRAVLSRYQAQHGAL
300 310 320
295 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 21:01:35 2016 done: Fri Nov 4 21:01:35 2016
Total Scan time: 3.110 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]