Result of FASTA (omim) for
pF1KB3614
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3614, 418 aa
1>>>pF1KB3614 418 - 418 aa - 418 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1095+/-0.000424; mu= 18.5318+/- 0.026
mean_var=70.4330+/-14.257, 0's: 0 Z-trim(110.8): 45 B-trim: 246 in 1/53
Lambda= 0.152822
statistics sampled from 19219 (19261) to 19219 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.589), E-opt: 0.2 (0.226), width: 16
Scan time: 8.290
The best scores are: opt bits E(85289)
NP_036227 (OMIM: 610366) AP-3 complex subunit mu-1 ( 418) 2760 618.0 1.3e-176
NP_001307193 (OMIM: 610366) AP-3 complex subunit m ( 418) 2760 618.0 1.3e-176
NP_996895 (OMIM: 610366) AP-3 complex subunit mu-1 ( 418) 2760 618.0 1.3e-176
NP_001307192 (OMIM: 610366) AP-3 complex subunit m ( 418) 2760 618.0 1.3e-176
NP_006794 (OMIM: 610469) AP-3 complex subunit mu-2 ( 418) 2448 549.2 6.9e-156
XP_016868466 (OMIM: 610469) PREDICTED: AP-3 comple ( 418) 2448 549.2 6.9e-156
NP_001127768 (OMIM: 610469) AP-3 complex subunit m ( 418) 2448 549.2 6.9e-156
NP_001307194 (OMIM: 610366) AP-3 complex subunit m ( 364) 1800 406.3 6.3e-113
XP_016868467 (OMIM: 610469) PREDICTED: AP-3 comple ( 303) 1776 401.0 2.1e-111
XP_016868468 (OMIM: 610469) PREDICTED: AP-3 comple ( 303) 1776 401.0 2.1e-111
NP_001287816 (OMIM: 607309) AP-1 complex subunit m ( 425) 527 125.7 2.2e-28
NP_005489 (OMIM: 607309) AP-1 complex subunit mu-2 ( 423) 513 122.6 1.8e-27
NP_115882 (OMIM: 603535) AP-1 complex subunit mu-1 ( 423) 482 115.8 2.1e-25
XP_016882910 (OMIM: 603535) PREDICTED: AP-1 comple ( 397) 452 109.1 2e-23
NP_004059 (OMIM: 601024) AP-2 complex subunit mu i ( 435) 383 94.0 8e-19
NP_001020376 (OMIM: 601024) AP-2 complex subunit m ( 433) 376 92.4 2.3e-18
NP_001298127 (OMIM: 601024) AP-2 complex subunit m ( 460) 345 85.6 2.8e-16
NP_001123996 (OMIM: 603535) AP-1 complex subunit m ( 435) 273 69.7 1.6e-11
NP_004713 (OMIM: 602296,612936) AP-4 complex subun ( 453) 271 69.3 2.2e-11
XP_006716238 (OMIM: 602296,612936) PREDICTED: AP-4 ( 419) 264 67.7 6.2e-11
XP_005250746 (OMIM: 602296,612936) PREDICTED: AP-4 ( 460) 264 67.7 6.6e-11
XP_011514987 (OMIM: 602296,612936) PREDICTED: AP-4 ( 460) 264 67.7 6.6e-11
XP_016882909 (OMIM: 603535) PREDICTED: AP-1 comple ( 409) 243 63.1 1.5e-09
XP_016868280 (OMIM: 602296,612936) PREDICTED: AP-4 ( 228) 182 49.4 1.1e-05
XP_005250747 (OMIM: 602296,612936) PREDICTED: AP-4 ( 385) 182 49.6 1.6e-05
XP_016868279 (OMIM: 602296,612936) PREDICTED: AP-4 ( 284) 163 45.3 0.00023
>>NP_036227 (OMIM: 610366) AP-3 complex subunit mu-1 iso (418 aa)
initn: 2760 init1: 2760 opt: 2760 Z-score: 3291.5 bits: 618.0 E(85289): 1.3e-176
Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)
10 20 30 40 50 60
pF1KB3 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYFFEAQEKAADVENVPPVISTPHHYLISIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYFFEAQEKAADVENVPPVISTPHHYLISIY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 RDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 RDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 FPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSNIPWRRAGVKYTNNEAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 FPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSNIPWRRAGVKYTNNEAY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 FDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRLLDDVSFHPCIRFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 FDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRLLDDVSFHPCIRFK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 RWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCGRFDITIGPKQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 RWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCGRFDITIGPKQN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 MGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWDVGKITPQKLPSLKGLVNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWDVGKITPQKLPSLKGLVNL
310 320 330 340 350 360
370 380 390 400 410
pF1KB3 QSGAPKPEENPSLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKGVKYVTKAGKFQVRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 QSGAPKPEENPSLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKGVKYVTKAGKFQVRT
370 380 390 400 410
>>NP_001307193 (OMIM: 610366) AP-3 complex subunit mu-1 (418 aa)
initn: 2760 init1: 2760 opt: 2760 Z-score: 3291.5 bits: 618.0 E(85289): 1.3e-176
Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)
10 20 30 40 50 60
pF1KB3 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYFFEAQEKAADVENVPPVISTPHHYLISIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYFFEAQEKAADVENVPPVISTPHHYLISIY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 RDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 FPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSNIPWRRAGVKYTNNEAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSNIPWRRAGVKYTNNEAY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 FDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRLLDDVSFHPCIRFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRLLDDVSFHPCIRFK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 RWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCGRFDITIGPKQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCGRFDITIGPKQN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 MGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWDVGKITPQKLPSLKGLVNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWDVGKITPQKLPSLKGLVNL
310 320 330 340 350 360
370 380 390 400 410
pF1KB3 QSGAPKPEENPSLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKGVKYVTKAGKFQVRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QSGAPKPEENPSLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKGVKYVTKAGKFQVRT
370 380 390 400 410
>>NP_996895 (OMIM: 610366) AP-3 complex subunit mu-1 iso (418 aa)
initn: 2760 init1: 2760 opt: 2760 Z-score: 3291.5 bits: 618.0 E(85289): 1.3e-176
Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)
10 20 30 40 50 60
pF1KB3 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYFFEAQEKAADVENVPPVISTPHHYLISIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYFFEAQEKAADVENVPPVISTPHHYLISIY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 RDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 RDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 FPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSNIPWRRAGVKYTNNEAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 FPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSNIPWRRAGVKYTNNEAY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 FDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRLLDDVSFHPCIRFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 FDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRLLDDVSFHPCIRFK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 RWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCGRFDITIGPKQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 RWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCGRFDITIGPKQN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 MGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWDVGKITPQKLPSLKGLVNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 MGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWDVGKITPQKLPSLKGLVNL
310 320 330 340 350 360
370 380 390 400 410
pF1KB3 QSGAPKPEENPSLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKGVKYVTKAGKFQVRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 QSGAPKPEENPSLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKGVKYVTKAGKFQVRT
370 380 390 400 410
>>NP_001307192 (OMIM: 610366) AP-3 complex subunit mu-1 (418 aa)
initn: 2760 init1: 2760 opt: 2760 Z-score: 3291.5 bits: 618.0 E(85289): 1.3e-176
Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)
10 20 30 40 50 60
pF1KB3 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYFFEAQEKAADVENVPPVISTPHHYLISIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYFFEAQEKAADVENVPPVISTPHHYLISIY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 RDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 FPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSNIPWRRAGVKYTNNEAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSNIPWRRAGVKYTNNEAY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 FDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRLLDDVSFHPCIRFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRLLDDVSFHPCIRFK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 RWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCGRFDITIGPKQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCGRFDITIGPKQN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 MGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWDVGKITPQKLPSLKGLVNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWDVGKITPQKLPSLKGLVNL
310 320 330 340 350 360
370 380 390 400 410
pF1KB3 QSGAPKPEENPSLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKGVKYVTKAGKFQVRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QSGAPKPEENPSLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKGVKYVTKAGKFQVRT
370 380 390 400 410
>>NP_006794 (OMIM: 610469) AP-3 complex subunit mu-2 [Ho (418 aa)
initn: 2448 init1: 2448 opt: 2448 Z-score: 2919.7 bits: 549.2 E(85289): 6.9e-156
Smith-Waterman score: 2448; 84.2% identity (96.9% similar) in 418 aa overlap (1-418:1-418)
10 20 30 40 50 60
pF1KB3 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYFFEAQEKAADVENVPPVISTPHHYLISIY
::::::::: :::::::::::::::.:::::::::::.:...::::::: ::::::.:.:
NP_006 MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 RDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNG
: :.:::.::::::::::::::::::.:::::::: ::: .::::::.:::.::::::::
NP_006 RHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 FPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSNIPWRRAGVKYTNNEAY
:::::::::::::::::::::.:::.::::.:::: ::::::: .::::.::::::::::
NP_006 FPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSVVPWRRTGVKYTNNEAY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 FDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRLLDDVSFHPCIRFK
:::.:::::::::::::. ::::::::::.::.:::::.:::::::::::::::::.:::
NP_006 FDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDLTLSFMNPRLLDDVSFHPCVRFK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 RWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCGRFDITIGPKQN
::::::.::::::::::::.::.::.::::::::::::.:::...:: :::.::.::::.
NP_006 RWESERILSFIPPDGNFRLLSYHVSAQNLVAIPVYVKHNISFRDSSSLGRFEITVGPKQT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 MGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWDVGKITPQKLPSLKGLVNL
:::::::.::: .::: ::::.:::.::..:::::::.:.::::::.::::::::: ..:
NP_006 MGKTIEGVTVTSQMPKGVLNMSLTPSQGTHTFDPVTKMLSWDVGKINPQKLPSLKGTMSL
310 320 330 340 350 360
370 380 390 400 410
pF1KB3 QSGAPKPEENPSLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKGVKYVTKAGKFQVRT
:.:: ::.:::..:.:::::::::::::::::::::::::::::.::.::::::::::
NP_006 QAGASKPDENPTINLQFKIQQLAISGLKVNRLDMYGEKYKPFKGIKYMTKAGKFQVRT
370 380 390 400 410
>>XP_016868466 (OMIM: 610469) PREDICTED: AP-3 complex su (418 aa)
initn: 2448 init1: 2448 opt: 2448 Z-score: 2919.7 bits: 549.2 E(85289): 6.9e-156
Smith-Waterman score: 2448; 84.2% identity (96.9% similar) in 418 aa overlap (1-418:1-418)
10 20 30 40 50 60
pF1KB3 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYFFEAQEKAADVENVPPVISTPHHYLISIY
::::::::: :::::::::::::::.:::::::::::.:...::::::: ::::::.:.:
XP_016 MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 RDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNG
: :.:::.::::::::::::::::::.:::::::: ::: .::::::.:::.::::::::
XP_016 RHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 FPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSNIPWRRAGVKYTNNEAY
:::::::::::::::::::::.:::.::::.:::: ::::::: .::::.::::::::::
XP_016 FPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSVVPWRRTGVKYTNNEAY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 FDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRLLDDVSFHPCIRFK
:::.:::::::::::::. ::::::::::.::.:::::.:::::::::::::::::.:::
XP_016 FDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDLTLSFMNPRLLDDVSFHPCVRFK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 RWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCGRFDITIGPKQN
::::::.::::::::::::.::.::.::::::::::::.:::...:: :::.::.::::.
XP_016 RWESERILSFIPPDGNFRLLSYHVSAQNLVAIPVYVKHNISFRDSSSLGRFEITVGPKQT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 MGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWDVGKITPQKLPSLKGLVNL
:::::::.::: .::: ::::.:::.::..:::::::.:.::::::.::::::::: ..:
XP_016 MGKTIEGVTVTSQMPKGVLNMSLTPSQGTHTFDPVTKMLSWDVGKINPQKLPSLKGTMSL
310 320 330 340 350 360
370 380 390 400 410
pF1KB3 QSGAPKPEENPSLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKGVKYVTKAGKFQVRT
:.:: ::.:::..:.:::::::::::::::::::::::::::::.::.::::::::::
XP_016 QAGASKPDENPTINLQFKIQQLAISGLKVNRLDMYGEKYKPFKGIKYMTKAGKFQVRT
370 380 390 400 410
>>NP_001127768 (OMIM: 610469) AP-3 complex subunit mu-2 (418 aa)
initn: 2448 init1: 2448 opt: 2448 Z-score: 2919.7 bits: 549.2 E(85289): 6.9e-156
Smith-Waterman score: 2448; 84.2% identity (96.9% similar) in 418 aa overlap (1-418:1-418)
10 20 30 40 50 60
pF1KB3 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYFFEAQEKAADVENVPPVISTPHHYLISIY
::::::::: :::::::::::::::.:::::::::::.:...::::::: ::::::.:.:
NP_001 MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 RDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNG
: :.:::.::::::::::::::::::.:::::::: ::: .::::::.:::.::::::::
NP_001 RHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 FPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSNIPWRRAGVKYTNNEAY
:::::::::::::::::::::.:::.::::.:::: ::::::: .::::.::::::::::
NP_001 FPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSVVPWRRTGVKYTNNEAY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 FDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRLLDDVSFHPCIRFK
:::.:::::::::::::. ::::::::::.::.:::::.:::::::::::::::::.:::
NP_001 FDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDLTLSFMNPRLLDDVSFHPCVRFK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 RWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCGRFDITIGPKQN
::::::.::::::::::::.::.::.::::::::::::.:::...:: :::.::.::::.
NP_001 RWESERILSFIPPDGNFRLLSYHVSAQNLVAIPVYVKHNISFRDSSSLGRFEITVGPKQT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 MGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWDVGKITPQKLPSLKGLVNL
:::::::.::: .::: ::::.:::.::..:::::::.:.::::::.::::::::: ..:
NP_001 MGKTIEGVTVTSQMPKGVLNMSLTPSQGTHTFDPVTKMLSWDVGKINPQKLPSLKGTMSL
310 320 330 340 350 360
370 380 390 400 410
pF1KB3 QSGAPKPEENPSLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKGVKYVTKAGKFQVRT
:.:: ::.:::..:.:::::::::::::::::::::::::::::.::.::::::::::
NP_001 QAGASKPDENPTINLQFKIQQLAISGLKVNRLDMYGEKYKPFKGIKYMTKAGKFQVRT
370 380 390 400 410
>>NP_001307194 (OMIM: 610366) AP-3 complex subunit mu-1 (364 aa)
initn: 1790 init1: 1790 opt: 1800 Z-score: 2148.4 bits: 406.3 E(85289): 6.3e-113
Smith-Waterman score: 2309; 87.1% identity (87.1% similar) in 418 aa overlap (1-418:1-364)
10 20 30 40 50 60
pF1KB3 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYFFEAQEKAADVENVPPVISTPHHYLISIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYFFEAQEKAADVENVPPVISTPHHYLISIY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 RDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNG
:::::::::::::::::::::::::::::::::::
NP_001 RDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFG-------------------------
70 80 90
130 140 150 160 170 180
pF1KB3 FPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSNIPWRRAGVKYTNNEAY
:::::::::::::::::::::::::::::::
NP_001 -----------------------------SSNVGDTLPTGQLSNIPWRRAGVKYTNNEAY
100 110 120
190 200 210 220 230 240
pF1KB3 FDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRLLDDVSFHPCIRFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRLLDDVSFHPCIRFK
130 140 150 160 170 180
250 260 270 280 290 300
pF1KB3 RWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCGRFDITIGPKQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCGRFDITIGPKQN
190 200 210 220 230 240
310 320 330 340 350 360
pF1KB3 MGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWDVGKITPQKLPSLKGLVNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWDVGKITPQKLPSLKGLVNL
250 260 270 280 290 300
370 380 390 400 410
pF1KB3 QSGAPKPEENPSLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKGVKYVTKAGKFQVRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QSGAPKPEENPSLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKGVKYVTKAGKFQVRT
310 320 330 340 350 360
>>XP_016868467 (OMIM: 610469) PREDICTED: AP-3 complex su (303 aa)
initn: 1776 init1: 1776 opt: 1776 Z-score: 2120.9 bits: 401.0 E(85289): 2.1e-111
Smith-Waterman score: 1776; 84.2% identity (97.4% similar) in 303 aa overlap (116-418:1-303)
90 100 110 120 130 140
pF1KB3 VADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPLATESNILKELIKPPTILRSVVN
::::::::::::::::::::::::::.:::
XP_016 MLDNGFPLATESNILKELIKPPTILRTVVN
10 20 30
150 160 170 180 190 200
pF1KB3 SITGSSNVGDTLPTGQLSNIPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGV
.::::.:::: ::::::: .::::.:::::::::::::.:::::::::::::. ::::::
XP_016 TITGSTNVGDQLPTGQLSVVPWRRTGVKYTNNEAYFDVIEEIDAIIDKSGSTITAEIQGV
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB3 IDACIKLSGMPDLSLSFMNPRLLDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVS
::::.::.:::::.:::::::::::::::::.:::::::::.::::::::::::.::.::
XP_016 IDACVKLTGMPDLTLSFMNPRLLDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVS
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB3 SQNLVAIPVYVKHSISFKENSSCGRFDITIGPKQNMGKTIEGITVTVHMPKVVLNMNLTP
.::::::::::::.:::...:: :::.::.::::.:::::::.::: .::: ::::.:::
XP_016 AQNLVAIPVYVKHNISFRDSSSLGRFEITVGPKQTMGKTIEGVTVTSQMPKGVLNMSLTP
160 170 180 190 200 210
330 340 350 360 370 380
pF1KB3 TQGSYTFDPVTKVLTWDVGKITPQKLPSLKGLVNLQSGAPKPEENPSLNIQFKIQQLAIS
.::..:::::::.:.::::::.::::::::: ..::.:: ::.:::..:.::::::::::
XP_016 SQGTHTFDPVTKMLSWDVGKINPQKLPSLKGTMSLQAGASKPDENPTINLQFKIQQLAIS
220 230 240 250 260 270
390 400 410
pF1KB3 GLKVNRLDMYGEKYKPFKGVKYVTKAGKFQVRT
:::::::::::::::::::.::.::::::::::
XP_016 GLKVNRLDMYGEKYKPFKGIKYMTKAGKFQVRT
280 290 300
>>XP_016868468 (OMIM: 610469) PREDICTED: AP-3 complex su (303 aa)
initn: 1776 init1: 1776 opt: 1776 Z-score: 2120.9 bits: 401.0 E(85289): 2.1e-111
Smith-Waterman score: 1776; 84.2% identity (97.4% similar) in 303 aa overlap (116-418:1-303)
90 100 110 120 130 140
pF1KB3 VADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPLATESNILKELIKPPTILRSVVN
::::::::::::::::::::::::::.:::
XP_016 MLDNGFPLATESNILKELIKPPTILRTVVN
10 20 30
150 160 170 180 190 200
pF1KB3 SITGSSNVGDTLPTGQLSNIPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGV
.::::.:::: ::::::: .::::.:::::::::::::.:::::::::::::. ::::::
XP_016 TITGSTNVGDQLPTGQLSVVPWRRTGVKYTNNEAYFDVIEEIDAIIDKSGSTITAEIQGV
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB3 IDACIKLSGMPDLSLSFMNPRLLDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVS
::::.::.:::::.:::::::::::::::::.:::::::::.::::::::::::.::.::
XP_016 IDACVKLTGMPDLTLSFMNPRLLDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVS
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB3 SQNLVAIPVYVKHSISFKENSSCGRFDITIGPKQNMGKTIEGITVTVHMPKVVLNMNLTP
.::::::::::::.:::...:: :::.::.::::.:::::::.::: .::: ::::.:::
XP_016 AQNLVAIPVYVKHNISFRDSSSLGRFEITVGPKQTMGKTIEGVTVTSQMPKGVLNMSLTP
160 170 180 190 200 210
330 340 350 360 370 380
pF1KB3 TQGSYTFDPVTKVLTWDVGKITPQKLPSLKGLVNLQSGAPKPEENPSLNIQFKIQQLAIS
.::..:::::::.:.::::::.::::::::: ..::.:: ::.:::..:.::::::::::
XP_016 SQGTHTFDPVTKMLSWDVGKINPQKLPSLKGTMSLQAGASKPDENPTINLQFKIQQLAIS
220 230 240 250 260 270
390 400 410
pF1KB3 GLKVNRLDMYGEKYKPFKGVKYVTKAGKFQVRT
:::::::::::::::::::.::.::::::::::
XP_016 GLKVNRLDMYGEKYKPFKGIKYMTKAGKFQVRT
280 290 300
418 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:14:48 2016 done: Sat Nov 5 05:14:49 2016
Total Scan time: 8.290 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]