Result of FASTA (omim) for
pF1KB3606
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3606, 198 aa
1>>>pF1KB3606 198 - 198 aa - 198 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8070+/-0.000336; mu= 15.2871+/- 0.021
mean_var=50.6689+/-10.094, 0's: 0 Z-trim(114.3): 25 B-trim: 342 in 1/49
Lambda= 0.180179
statistics sampled from 24101 (24126) to 24101 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.283), width: 16
Scan time: 5.860
The best scores are: opt bits E(85289)
NP_005800 (OMIM: 600538) peroxiredoxin-2 [Homo sap ( 198) 1332 353.6 1.2e-97
NP_001189360 (OMIM: 176763) peroxiredoxin-1 [Homo ( 199) 1101 293.5 1.5e-79
NP_859047 (OMIM: 176763) peroxiredoxin-1 [Homo sap ( 199) 1101 293.5 1.5e-79
NP_002565 (OMIM: 176763) peroxiredoxin-1 [Homo sap ( 199) 1101 293.5 1.5e-79
NP_859048 (OMIM: 176763) peroxiredoxin-1 [Homo sap ( 199) 1101 293.5 1.5e-79
NP_006397 (OMIM: 300927) peroxiredoxin-4 precursor ( 271) 957 256.2 3.5e-68
XP_005274495 (OMIM: 300927) PREDICTED: peroxiredox ( 257) 953 255.1 7e-68
XP_016884719 (OMIM: 300927) PREDICTED: peroxiredox ( 350) 929 248.9 6.9e-66
XP_016884720 (OMIM: 300927) PREDICTED: peroxiredox ( 336) 925 247.9 1.4e-65
NP_006784 (OMIM: 604769) thioredoxin-dependent per ( 256) 881 236.4 3e-62
NP_001289201 (OMIM: 604769) thioredoxin-dependent ( 198) 549 150.0 2.3e-36
NP_004896 (OMIM: 602316) peroxiredoxin-6 [Homo sap ( 224) 189 56.5 3.8e-08
NP_036226 (OMIM: 606583) peroxiredoxin-5, mitochon ( 214) 125 39.8 0.0037
>>NP_005800 (OMIM: 600538) peroxiredoxin-2 [Homo sapiens (198 aa)
initn: 1332 init1: 1332 opt: 1332 Z-score: 1873.9 bits: 353.6 E(85289): 1.2e-97
Smith-Waterman score: 1332; 100.0% identity (100.0% similar) in 198 aa overlap (1-198:1-198)
10 20 30 40 50 60
pF1KB3 MASGNARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MASGNARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 RAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 DEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGS
130 140 150 160 170 180
190
pF1KB3 DTIKPNVDDSKEYFSKHN
::::::::::::::::::
NP_005 DTIKPNVDDSKEYFSKHN
190
>>NP_001189360 (OMIM: 176763) peroxiredoxin-1 [Homo sapi (199 aa)
initn: 1099 init1: 1002 opt: 1101 Z-score: 1549.4 bits: 293.5 E(85289): 1.5e-79
Smith-Waterman score: 1101; 77.8% identity (96.0% similar) in 198 aa overlap (1-197:1-198)
10 20 30 40 50
pF1KB3 MASGNARIGKPAPDFKATAVV-DGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFS
:.::::.::.:::.::::::. :: ::...::::::::::.:::::::::::::::::::
NP_001 MSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 NRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLK
.:::.:.::.:.:.:.::::.: ::::.:::.:.:::::.::::..: : ...::::::
NP_001 DRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB3 TDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPG
.::::..::::::: ::.:::::::::::::::::.::::::::.::.::::::::::::
NP_001 ADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG
130 140 150 160 170 180
180 190
pF1KB3 SDTIKPNVDDSKEYFSKHN
::::::.:. :::::::.
NP_001 SDTIKPDVQKSKEYFSKQK
190
>>NP_859047 (OMIM: 176763) peroxiredoxin-1 [Homo sapiens (199 aa)
initn: 1099 init1: 1002 opt: 1101 Z-score: 1549.4 bits: 293.5 E(85289): 1.5e-79
Smith-Waterman score: 1101; 77.8% identity (96.0% similar) in 198 aa overlap (1-197:1-198)
10 20 30 40 50
pF1KB3 MASGNARIGKPAPDFKATAVV-DGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFS
:.::::.::.:::.::::::. :: ::...::::::::::.:::::::::::::::::::
NP_859 MSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 NRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLK
.:::.:.::.:.:.:.::::.: ::::.:::.:.:::::.::::..: : ...::::::
NP_859 DRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB3 TDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPG
.::::..::::::: ::.:::::::::::::::::.::::::::.::.::::::::::::
NP_859 ADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG
130 140 150 160 170 180
180 190
pF1KB3 SDTIKPNVDDSKEYFSKHN
::::::.:. :::::::.
NP_859 SDTIKPDVQKSKEYFSKQK
190
>>NP_002565 (OMIM: 176763) peroxiredoxin-1 [Homo sapiens (199 aa)
initn: 1099 init1: 1002 opt: 1101 Z-score: 1549.4 bits: 293.5 E(85289): 1.5e-79
Smith-Waterman score: 1101; 77.8% identity (96.0% similar) in 198 aa overlap (1-197:1-198)
10 20 30 40 50
pF1KB3 MASGNARIGKPAPDFKATAVV-DGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFS
:.::::.::.:::.::::::. :: ::...::::::::::.:::::::::::::::::::
NP_002 MSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 NRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLK
.:::.:.::.:.:.:.::::.: ::::.:::.:.:::::.::::..: : ...::::::
NP_002 DRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB3 TDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPG
.::::..::::::: ::.:::::::::::::::::.::::::::.::.::::::::::::
NP_002 ADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG
130 140 150 160 170 180
180 190
pF1KB3 SDTIKPNVDDSKEYFSKHN
::::::.:. :::::::.
NP_002 SDTIKPDVQKSKEYFSKQK
190
>>NP_859048 (OMIM: 176763) peroxiredoxin-1 [Homo sapiens (199 aa)
initn: 1099 init1: 1002 opt: 1101 Z-score: 1549.4 bits: 293.5 E(85289): 1.5e-79
Smith-Waterman score: 1101; 77.8% identity (96.0% similar) in 198 aa overlap (1-197:1-198)
10 20 30 40 50
pF1KB3 MASGNARIGKPAPDFKATAVV-DGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFS
:.::::.::.:::.::::::. :: ::...::::::::::.:::::::::::::::::::
NP_859 MSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 NRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLK
.:::.:.::.:.:.:.::::.: ::::.:::.:.:::::.::::..: : ...::::::
NP_859 DRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB3 TDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPG
.::::..::::::: ::.:::::::::::::::::.::::::::.::.::::::::::::
NP_859 ADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG
130 140 150 160 170 180
180 190
pF1KB3 SDTIKPNVDDSKEYFSKHN
::::::.:. :::::::.
NP_859 SDTIKPDVQKSKEYFSKQK
190
>>NP_006397 (OMIM: 300927) peroxiredoxin-4 precursor [Ho (271 aa)
initn: 960 init1: 944 opt: 957 Z-score: 1345.0 bits: 256.2 E(85289): 3.5e-68
Smith-Waterman score: 957; 70.5% identity (90.2% similar) in 193 aa overlap (6-198:79-271)
10 20 30
pF1KB3 MASGNARIGKPAPDFKATAVVDGAFKEVKLSDYKG
:.:.:::: ...:::.:: :::.::.::.:
NP_006 EECHFYAGGQVYPGEASRVSVADHSLHLSKAKISKPAPYWEGTAVIDGEFKELKLTDYRG
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB3 KYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGG
::.:.::::::::::::::::::..: :.::... ::.. ::::::::::::::::..::
NP_006 KYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGG
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB3 LGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEA
:::. ::::.:.:...:.:::: : : . ::::::: ::.:::::.:::::::::::.
NP_006 LGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDET
170 180 190 200 210 220
160 170 180 190
pF1KB3 LRLVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSKEYFSKHN
:::::::::::.:::::::::::::.:: :. . .::.: :
NP_006 LRLVQAFQYTDKHGEVCPAGWKPGSETIIPDPAGKLKYFDKLN
230 240 250 260 270
>>XP_005274495 (OMIM: 300927) PREDICTED: peroxiredoxin-4 (257 aa)
initn: 960 init1: 944 opt: 953 Z-score: 1339.7 bits: 255.1 E(85289): 7e-68
Smith-Waterman score: 953; 69.6% identity (89.7% similar) in 194 aa overlap (5-198:64-257)
10 20 30
pF1KB3 MASGNARIGKPAPDFKATAVVDGAFKEVKLSDYK
:. ..:::: ...:::.:: :::.::.::.
XP_005 EAREGEDWEREPPRQRPPIYEPPESEELPDNVMVSKPAPYWEGTAVIDGEFKELKLTDYR
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB3 GKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEG
:::.:.::::::::::::::::::..: :.::... ::.. ::::::::::::::::..:
XP_005 GKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQG
100 110 120 130 140 150
100 110 120 130 140 150
pF1KB3 GLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDE
::::. ::::.:.:...:.:::: : : . ::::::: ::.:::::.:::::::::::
XP_005 GLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDE
160 170 180 190 200 210
160 170 180 190
pF1KB3 ALRLVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSKEYFSKHN
.:::::::::::.:::::::::::::.:: :. . .::.: :
XP_005 TLRLVQAFQYTDKHGEVCPAGWKPGSETIIPDPAGKLKYFDKLN
220 230 240 250
>>XP_016884719 (OMIM: 300927) PREDICTED: peroxiredoxin-4 (350 aa)
initn: 916 init1: 916 opt: 929 Z-score: 1303.9 bits: 248.9 E(85289): 6.9e-66
Smith-Waterman score: 929; 73.0% identity (92.7% similar) in 178 aa overlap (6-183:79-256)
10 20 30
pF1KB3 MASGNARIGKPAPDFKATAVVDGAFKEVKLSDYKG
:.:.:::: ...:::.:: :::.::.::.:
XP_016 EECHFYAGGQVYPGEASRVSVADHSLHLSKAKISKPAPYWEGTAVIDGEFKELKLTDYRG
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB3 KYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGG
::.:.::::::::::::::::::..: :.::... ::.. ::::::::::::::::..::
XP_016 KYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGG
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB3 LGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEA
:::. ::::.:.:...:.:::: : : . ::::::: ::.:::::.:::::::::::.
XP_016 LGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDET
170 180 190 200 210 220
160 170 180 190
pF1KB3 LRLVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSKEYFSKHN
:::::::::::.:::::::::::::.:.
XP_016 LRLVQAFQYTDKHGEVCPAGWKPGSETVSIYICFYVELMVRVEKNAGRAQWLTPVIPALW
230 240 250 260 270 280
>>XP_016884720 (OMIM: 300927) PREDICTED: peroxiredoxin-4 (336 aa)
initn: 916 init1: 916 opt: 925 Z-score: 1298.6 bits: 247.9 E(85289): 1.4e-65
Smith-Waterman score: 925; 72.1% identity (92.2% similar) in 179 aa overlap (5-183:64-242)
10 20 30
pF1KB3 MASGNARIGKPAPDFKATAVVDGAFKEVKLSDYK
:. ..:::: ...:::.:: :::.::.::.
XP_016 EAREGEDWEREPPRQRPPIYEPPESEELPDNVMVSKPAPYWEGTAVIDGEFKELKLTDYR
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB3 GKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEG
:::.:.::::::::::::::::::..: :.::... ::.. ::::::::::::::::..:
XP_016 GKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQG
100 110 120 130 140 150
100 110 120 130 140 150
pF1KB3 GLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDE
::::. ::::.:.:...:.:::: : : . ::::::: ::.:::::.:::::::::::
XP_016 GLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDE
160 170 180 190 200 210
160 170 180 190
pF1KB3 ALRLVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSKEYFSKHN
.:::::::::::.:::::::::::::.:.
XP_016 TLRLVQAFQYTDKHGEVCPAGWKPGSETVSIYICFYVELMVRVEKNAGRAQWLTPVIPAL
220 230 240 250 260 270
>>NP_006784 (OMIM: 604769) thioredoxin-dependent peroxid (256 aa)
initn: 879 init1: 879 opt: 881 Z-score: 1238.6 bits: 236.4 E(85289): 3e-62
Smith-Waterman score: 881; 65.4% identity (89.0% similar) in 191 aa overlap (8-198:65-255)
10 20 30
pF1KB3 MASGNARIGKPAPDFKATAVVDGAFKEVKLSDYKGKY
. . :: ::.::::.: ::...:.:.::::
NP_006 CGRTSLTNLLCSGSSQAKLFSTSSSCHAPAVTQHAPYFKGTAVVNGEFKDLSLDDFKGKY
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB3 VVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLG
.:::::::::::::::::.:::..:..:. ..:::..:::::.:.::::::::::.::::
NP_006 LVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLG
100 110 120 130 140 150
100 110 120 130 140 150
pF1KB3 PLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALR
.:: ::.:.:...:.::::: :.: ::::::: .::.....::::::::::.:.::
NP_006 HMNIALLSDLTKQISRDYGVLLEGSGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLR
160 170 180 190 200 210
160 170 180 190
pF1KB3 LVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSKEYFSKHN
::.::::.. :::::::.: : : ::::. :::::.: :
NP_006 LVKAFQYVETHGEVCPANWTPDSPTIKPSPAASKEYFQKVNQ
220 230 240 250
198 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:14:13 2016 done: Sat Nov 5 05:14:14 2016
Total Scan time: 5.860 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]