FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3606, 198 aa
  1>>>pF1KB3606 198 - 198 aa - 198 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2793+/-0.000742; mu= 12.8074+/- 0.045
 mean_var=53.9521+/-10.673, 0's: 0 Z-trim(107.3): 10  B-trim: 73 in 1/49
 Lambda= 0.174610
 statistics sampled from 9496 (9503) to 9496 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.292), width:  16
 Scan time:  2.010

The best scores are:                                      opt bits E(32554)
CCDS12281.1 PRDX2 gene_id:7001|Hs108|chr19         ( 198) 1332 343.2 6.4e-95
CCDS522.1 PRDX1 gene_id:5052|Hs108|chr1            ( 199) 1101 285.0 2.1e-77
CCDS14206.1 PRDX4 gene_id:10549|Hs108|chrX         ( 271)  957 248.7 2.3e-66
CCDS7611.1 PRDX3 gene_id:10935|Hs108|chr10         ( 256)  881 229.6 1.3e-60


>>CCDS12281.1 PRDX2 gene_id:7001|Hs108|chr19              (198 aa)
 initn: 1332 init1: 1332 opt: 1332  Z-score: 1817.6  bits: 343.2 E(32554): 6.4e-95
Smith-Waterman score: 1332; 100.0% identity (100.0% similar) in 198 aa overlap (1-198:1-198)

               10        20        30        40        50        60
pF1KB3 MASGNARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MASGNARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 RAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 DEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGS
              130       140       150       160       170       180

              190        
pF1KB3 DTIKPNVDDSKEYFSKHN
       ::::::::::::::::::
CCDS12 DTIKPNVDDSKEYFSKHN
              190        

>>CCDS522.1 PRDX1 gene_id:5052|Hs108|chr1                 (199 aa)
 initn: 1099 init1: 1002 opt: 1101  Z-score: 1503.1  bits: 285.0 E(32554): 2.1e-77
Smith-Waterman score: 1101; 77.8% identity (96.0% similar) in 198 aa overlap (1-197:1-198)

               10        20         30        40        50         
pF1KB3 MASGNARIGKPAPDFKATAVV-DGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFS
       :.::::.::.:::.::::::. :: ::...::::::::::.:::::::::::::::::::
CCDS52 MSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB3 NRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLK
       .:::.:.::.:.:.:.::::.: ::::.:::.:.:::::.::::..:  : ...::::::
CCDS52 DRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLK
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB3 TDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPG
       .::::..::::::: ::.:::::::::::::::::.::::::::.::.::::::::::::
CCDS52 ADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG
              130       140       150       160       170       180

     180       190        
pF1KB3 SDTIKPNVDDSKEYFSKHN
       ::::::.:. :::::::. 
CCDS52 SDTIKPDVQKSKEYFSKQK
              190         

>>CCDS14206.1 PRDX4 gene_id:10549|Hs108|chrX              (271 aa)
 initn: 960 init1: 944 opt: 957  Z-score: 1304.8  bits: 248.7 E(32554): 2.3e-66
Smith-Waterman score: 957; 70.5% identity (90.2% similar) in 193 aa overlap (6-198:79-271)

                                        10        20        30     
pF1KB3                          MASGNARIGKPAPDFKATAVVDGAFKEVKLSDYKG
                                     :.:.:::: ...:::.:: :::.::.::.:
CCDS14 EECHFYAGGQVYPGEASRVSVADHSLHLSKAKISKPAPYWEGTAVIDGEFKELKLTDYRG
       50        60        70        80        90       100        

          40        50        60        70        80        90     
pF1KB3 KYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGG
       ::.:.::::::::::::::::::..: :.::... ::.. ::::::::::::::::..::
CCDS14 KYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGG
      110       120       130       140       150       160        

         100       110       120       130       140       150     
pF1KB3 LGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEA
       :::. ::::.:.:...:.::::   : : . ::::::: ::.:::::.:::::::::::.
CCDS14 LGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDET
      170       180       190       200       210       220        

         160       170       180       190        
pF1KB3 LRLVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSKEYFSKHN
       :::::::::::.:::::::::::::.:: :.   . .::.: :
CCDS14 LRLVQAFQYTDKHGEVCPAGWKPGSETIIPDPAGKLKYFDKLN
      230       240       250       260       270 

>>CCDS7611.1 PRDX3 gene_id:10935|Hs108|chr10              (256 aa)
 initn: 879 init1: 879 opt: 881  Z-score: 1201.7  bits: 229.6 E(32554): 1.3e-60
Smith-Waterman score: 881; 65.4% identity (89.0% similar) in 191 aa overlap (8-198:65-255)

                                      10        20        30       
pF1KB3                        MASGNARIGKPAPDFKATAVVDGAFKEVKLSDYKGKY
                                     . . :: ::.::::.: ::...:.:.::::
CCDS76 CGRTSLTNLLCSGSSQAKLFSTSSSCHAPAVTQHAPYFKGTAVVNGEFKDLSLDDFKGKY
           40        50        60        70        80        90    

        40        50        60        70        80        90       
pF1KB3 VVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLG
       .:::::::::::::::::.:::..:..:. ..:::..:::::.:.::::::::::.::::
CCDS76 LVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLG
          100       110       120       130       140       150    

       100       110       120       130       140       150       
pF1KB3 PLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALR
        .:: ::.:.:...:.:::::    :.: ::::::: .::.....::::::::::.:.::
CCDS76 HMNIALLSDLTKQISRDYGVLLEGSGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLR
          160       170       180       190       200       210    

       160       170       180       190         
pF1KB3 LVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSKEYFSKHN 
       ::.::::.. :::::::.: : : ::::.   :::::.: : 
CCDS76 LVKAFQYVETHGEVCPANWTPDSPTIKPSPAASKEYFQKVNQ
          220       230       240       250      




198 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:14:12 2016 done: Sat Nov  5 05:14:13 2016
 Total Scan time:  2.010 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]