Result of FASTA (omim) for
pF1KB3590
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3590, 131 aa
1>>>pF1KB3590 131 - 131 aa - 131 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6916+/-0.000311; mu= 14.4320+/- 0.019
mean_var=60.3012+/-11.918, 0's: 0 Z-trim(117.2): 39 B-trim: 0 in 0/50
Lambda= 0.165162
statistics sampled from 28935 (28974) to 28935 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.34), width: 16
Scan time: 4.230
The best scores are: opt bits E(85289)
NP_001120685 (OMIM: 601384) lymphocyte antigen 6E ( 131) 880 217.3 5.8e-57
NP_002337 (OMIM: 601384) lymphocyte antigen 6E pre ( 131) 880 217.3 5.8e-57
NP_002338 (OMIM: 603625) lymphocyte antigen 6H iso ( 140) 204 56.2 1.9e-08
XP_016868903 (OMIM: 603625) PREDICTED: lymphocyte ( 140) 204 56.2 1.9e-08
NP_001129127 (OMIM: 603625) lymphocyte antigen 6H ( 161) 204 56.2 2.1e-08
NP_001123950 (OMIM: 603625) lymphocyte antigen 6H ( 161) 204 56.2 2.1e-08
XP_016868902 (OMIM: 603625) PREDICTED: lymphocyte ( 166) 204 56.3 2.2e-08
NP_005663 (OMIM: 602470) prostate stem cell antige ( 114) 196 54.2 6e-08
NP_803430 (OMIM: 606110) ly-6/neurotoxin-like prot ( 116) 168 47.6 6.2e-06
NP_803252 (OMIM: 606110) ly-6/neurotoxin-like prot ( 116) 168 47.6 6.2e-06
NP_803429 (OMIM: 606110) ly-6/neurotoxin-like prot ( 116) 168 47.6 6.2e-06
NP_003686 (OMIM: 606204) lymphocyte antigen 6D pre ( 128) 157 45.0 4.1e-05
NP_065160 (OMIM: 248300,606119) secreted Ly-6/uPAR ( 103) 141 41.1 0.00049
NP_803253 (OMIM: 606110) ly-6/neurotoxin-like prot ( 97) 136 39.9 0.0011
>>NP_001120685 (OMIM: 601384) lymphocyte antigen 6E prec (131 aa)
initn: 880 init1: 880 opt: 880 Z-score: 1143.6 bits: 217.3 E(85289): 5.8e-57
Smith-Waterman score: 880; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KB3 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL
70 80 90 100 110 120
130
pF1KB3 SLLPALLRFGP
:::::::::::
NP_001 SLLPALLRFGP
130
>>NP_002337 (OMIM: 601384) lymphocyte antigen 6E precurs (131 aa)
initn: 880 init1: 880 opt: 880 Z-score: 1143.6 bits: 217.3 E(85289): 5.8e-57
Smith-Waterman score: 880; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KB3 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL
70 80 90 100 110 120
130
pF1KB3 SLLPALLRFGP
:::::::::::
NP_002 SLLPALLRFGP
130
>>NP_002338 (OMIM: 603625) lymphocyte antigen 6H isoform (140 aa)
initn: 161 init1: 71 opt: 204 Z-score: 272.7 bits: 56.2 E(85289): 1.9e-08
Smith-Waterman score: 204; 32.6% identity (56.7% similar) in 141 aa overlap (1-131:6-140)
10 20 30 40 50
pF1KB3 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASA
:: . .:::.:: : .: : .: .. .: : :. .:. :..: .
NP_002 MLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCT-PKQCQPSDTVCASVRITD
10 20 30 40 50
60 70 80 90 100
pF1KB3 GIGNLVTFGHSLSKTCSPACPIPE---------G-VNVGVASMGISCCQSFLCNFSAADG
.. ::..: :. .: . . : .: :. .. ..::.. ::: .:. :
NP_002 PSSS--RKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAG
60 70 80 90 100 110
110 120 130
pF1KB3 GLRASVTLLGAGLLLSLLPALLRFGP
: :..:::::: :::: ::
NP_002 H---SPWALAGGLLLSLGPALLWAGP
120 130 140
>>XP_016868903 (OMIM: 603625) PREDICTED: lymphocyte anti (140 aa)
initn: 161 init1: 71 opt: 204 Z-score: 272.7 bits: 56.2 E(85289): 1.9e-08
Smith-Waterman score: 204; 32.6% identity (56.7% similar) in 141 aa overlap (1-131:6-140)
10 20 30 40 50
pF1KB3 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASA
:: . .:::.:: : .: : .: .. .: : :. .:. :..: .
XP_016 MLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCT-PKQCQPSDTVCASVRITD
10 20 30 40 50
60 70 80 90 100
pF1KB3 GIGNLVTFGHSLSKTCSPACPIPE---------G-VNVGVASMGISCCQSFLCNFSAADG
.. ::..: :. .: . . : .: :. .. ..::.. ::: .:. :
XP_016 PSSS--RKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAG
60 70 80 90 100 110
110 120 130
pF1KB3 GLRASVTLLGAGLLLSLLPALLRFGP
: :..:::::: :::: ::
XP_016 H---SPWALAGGLLLSLGPALLWAGP
120 130 140
>>NP_001129127 (OMIM: 603625) lymphocyte antigen 6H isof (161 aa)
initn: 148 init1: 71 opt: 204 Z-score: 271.8 bits: 56.2 E(85289): 2.1e-08
Smith-Waterman score: 204; 32.6% identity (56.7% similar) in 141 aa overlap (1-131:27-161)
10 20 30
pF1KB3 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLY
:: . .:::.:: : .: : .: .. .
NP_001 MLAPQRTRAPSPRAAPRPTRSMLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSH
10 20 30 40 50 60
40 50 60 70 80
pF1KB3 CLKPTICSDQDNYCVTVSASAGIGNLVTFGHSLSKTCSPACPIPE---------G-VNVG
: : :. .:. :..: . .. ::..: :. .: . . : .: :
NP_001 CT-PKQCQPSDTVCASVRITDPSSS--RKDHSVNKMCASSCDFVKRHFFSDYLMGFINSG
70 80 90 100 110
90 100 110 120 130
pF1KB3 VASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLLSLLPALLRFGP
. .. ..::.. ::: .:. : : :..:::::: :::: ::
NP_001 ILKVDVDCCEKDLCNGAAGAGH---SPWALAGGLLLSLGPALLWAGP
120 130 140 150 160
>>NP_001123950 (OMIM: 603625) lymphocyte antigen 6H isof (161 aa)
initn: 148 init1: 71 opt: 204 Z-score: 271.8 bits: 56.2 E(85289): 2.1e-08
Smith-Waterman score: 204; 32.6% identity (56.7% similar) in 141 aa overlap (1-131:27-161)
10 20 30
pF1KB3 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLY
:: . .:::.:: : .: : .: .. .
NP_001 MLAPQRTRAPSPRAAPRPTRSMLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSH
10 20 30 40 50 60
40 50 60 70 80
pF1KB3 CLKPTICSDQDNYCVTVSASAGIGNLVTFGHSLSKTCSPACPIPE---------G-VNVG
: : :. .:. :..: . .. ::..: :. .: . . : .: :
NP_001 CT-PKQCQPSDTVCASVRITDPSSS--RKDHSVNKMCASSCDFVKRHFFSDYLMGFINSG
70 80 90 100 110
90 100 110 120 130
pF1KB3 VASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLLSLLPALLRFGP
. .. ..::.. ::: .:. : : :..:::::: :::: ::
NP_001 ILKVDVDCCEKDLCNGAAGAGH---SPWALAGGLLLSLGPALLWAGP
120 130 140 150 160
>>XP_016868902 (OMIM: 603625) PREDICTED: lymphocyte anti (166 aa)
initn: 148 init1: 71 opt: 204 Z-score: 271.7 bits: 56.3 E(85289): 2.2e-08
Smith-Waterman score: 204; 32.6% identity (56.7% similar) in 141 aa overlap (1-131:32-166)
10 20 30
pF1KB3 MKIFLPVLLAALLGVERASSLMCFSCLNQK
:: . .:::.:: : .: : .:
XP_016 LLPSRLAPQRTRAPSPRAAPRPTRSMLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTT
10 20 30 40 50 60
40 50 60 70 80
pF1KB3 SNLYCLKPTICSDQDNYCVTVSASAGIGNLVTFGHSLSKTCSPACPIPE---------G-
.. .: : :. .:. :..: . .. ::..: :. .: . . :
XP_016 NSSHCT-PKQCQPSDTVCASVRITDPSSS--RKDHSVNKMCASSCDFVKRHFFSDYLMGF
70 80 90 100 110
90 100 110 120 130
pF1KB3 VNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLLSLLPALLRFGP
.: :. .. ..::.. ::: .:. : : :..:::::: :::: ::
XP_016 INSGILKVDVDCCEKDLCNGAAGAGH---SPWALAGGLLLSLGPALLWAGP
120 130 140 150 160
>>NP_005663 (OMIM: 602470) prostate stem cell antigen pr (114 aa)
initn: 138 init1: 65 opt: 196 Z-score: 263.6 bits: 54.2 E(85289): 6e-08
Smith-Waterman score: 196; 34.1% identity (61.0% similar) in 123 aa overlap (11-131:2-111)
10 20 30 40 50 60
pF1KB3 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL
: :... ...:.:.:: : :: ::. :.. . : :. : .: :
NP_005 MAGLALQPGTALLCYSCKAQVSNEDCLQVENCTQLGEQCWTARIRA-VGLL
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 VTFGHSLSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLL
.. .:: :: : . .. . :.. .:.::.. ::: :.: . : :. .:
NP_005 TV----ISKGCSLNC-VDDSQDYYVGKKNITCCDTDLCNASGAHA-------LQPAAAIL
60 70 80 90
130
pF1KB3 SLLPAL--LRFGP
.::::: : .::
NP_005 ALLPALGLLLWGPGQL
100 110
>>NP_803430 (OMIM: 606110) ly-6/neurotoxin-like protein (116 aa)
initn: 122 init1: 73 opt: 168 Z-score: 227.5 bits: 47.6 E(85289): 6.2e-06
Smith-Waterman score: 168; 30.2% identity (55.8% similar) in 129 aa overlap (1-127:1-116)
10 20 30 40 50 60
pF1KB3 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL
: .: ..:..:.:. :..: : : . .: :..: : . ::.:. . .
NP_803 MTPLLTLILVVLMGLPLAQALDCHVCAYNGDN--CFNPMRCPAMVAYCMTTRTYYTPTRM
10 20 30 40 50
70 80 90 100 110
pF1KB3 VTFGHSLSKTCSPAC--PIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGL
..::.: : : . .: . ... :::: ::: . :: . .:: : .
NP_803 -----KVSKSCVPRCFETVYDGYSKHAST--TSCCQYDLCNGT----GLATPATLALAPI
60 70 80 90 100
120 130
pF1KB3 LLSLLPALLRFGP
::. : .::
NP_803 LLATLWGLL
110
>>NP_803252 (OMIM: 606110) ly-6/neurotoxin-like protein (116 aa)
initn: 122 init1: 73 opt: 168 Z-score: 227.5 bits: 47.6 E(85289): 6.2e-06
Smith-Waterman score: 168; 30.2% identity (55.8% similar) in 129 aa overlap (1-127:1-116)
10 20 30 40 50 60
pF1KB3 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNL
: .: ..:..:.:. :..: : : . .: :..: : . ::.:. . .
NP_803 MTPLLTLILVVLMGLPLAQALDCHVCAYNGDN--CFNPMRCPAMVAYCMTTRTYYTPTRM
10 20 30 40 50
70 80 90 100 110
pF1KB3 VTFGHSLSKTCSPAC--PIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGL
..::.: : : . .: . ... :::: ::: . :: . .:: : .
NP_803 -----KVSKSCVPRCFETVYDGYSKHAST--TSCCQYDLCNGT----GLATPATLALAPI
60 70 80 90 100
120 130
pF1KB3 LLSLLPALLRFGP
::. : .::
NP_803 LLATLWGLL
110
131 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:13:03 2016 done: Sat Nov 5 05:13:04 2016
Total Scan time: 4.230 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]