Result of FASTA (ccds) for
pF1KB3552
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3552, 373 aa
1>>>pF1KB3552 373 - 373 aa - 373 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.4729+/-0.000799; mu= 1.1710+/- 0.048
mean_var=255.1025+/-51.022, 0's: 0 Z-trim(117.5): 5 B-trim: 14 in 1/52
Lambda= 0.080300
statistics sampled from 18266 (18271) to 18266 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.561), width: 16
Scan time: 3.300
The best scores are: opt bits E(32554)
CCDS7702.1 RASSF7 gene_id:8045|Hs108|chr11 ( 373) 2513 303.2 2.3e-82
CCDS44505.1 RASSF7 gene_id:8045|Hs108|chr11 ( 320) 2121 257.8 9.8e-69
CCDS44506.1 RASSF7 gene_id:8045|Hs108|chr11 ( 337) 2114 257.0 1.8e-68
CCDS8705.1 RASSF8 gene_id:11228|Hs108|chr12 ( 392) 483 68.1 1.5e-11
CCDS53765.1 RASSF8 gene_id:11228|Hs108|chr12 ( 419) 483 68.1 1.6e-11
>>CCDS7702.1 RASSF7 gene_id:8045|Hs108|chr11 (373 aa)
initn: 2513 init1: 2513 opt: 2513 Z-score: 1592.0 bits: 303.2 E(32554): 2.3e-82
Smith-Waterman score: 2513; 100.0% identity (100.0% similar) in 373 aa overlap (1-373:1-373)
10 20 30 40 50 60
pF1KB3 MLLGLAAMELKVWVDGIQRVVCGVSEQTTCQEVVIALAQAIGQTGRFVLVQRLREKERQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MLLGLAAMELKVWVDGIQRVVCGVSEQTTCQEVVIALAQAIGQTGRFVLVQRLREKERQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LPQECPVGAQATCGQFASDVQFVLRRTGPSLAGRPSSDSCPPPERCLIRASLPVKPRAAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LPQECPVGAQATCGQFASDVQFVLRRTGPSLAGRPSSDSCPPPERCLIRASLPVKPRAAL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 GCEPRKTLTPEPAPSLSRPGPAAPVTPTPGCCTDLRGLELRVQRNAEELGHEAFWEQELR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 GCEPRKTLTPEPAPSLSRPGPAAPVTPTPGCCTDLRGLELRVQRNAEELGHEAFWEQELR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 REQAREREGQARLQALSAATAEHAARLQALDAQARALEAELQLAAEAPGPPSPMASATER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 REQAREREGQARLQALSAATAEHAARLQALDAQARALEAELQLAAEAPGPPSPMASATER
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 LHQDLAVQERQSAEVQGSLALVSRALEAAERALQAQAQELEELNRELRQCNLQQFIQQTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LHQDLAVQERQSAEVQGSLALVSRALEAAERALQAQAQELEELNRELRQCNLQQFIQQTG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 AALPPPPRPDRGPPGTQGPLPPAREESLLGAPSESHAGAQPRPRGGPHDAELLEVAAAPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 AALPPPPRPDRGPPGTQGPLPPAREESLLGAPSESHAGAQPRPRGGPHDAELLEVAAAPA
310 320 330 340 350 360
370
pF1KB3 PEWCPLAAQPQAL
:::::::::::::
CCDS77 PEWCPLAAQPQAL
370
>>CCDS44505.1 RASSF7 gene_id:8045|Hs108|chr11 (320 aa)
initn: 2197 init1: 2121 opt: 2121 Z-score: 1347.5 bits: 257.8 E(32554): 9.8e-69
Smith-Waterman score: 2121; 99.7% identity (99.7% similar) in 319 aa overlap (1-319:1-319)
10 20 30 40 50 60
pF1KB3 MLLGLAAMELKVWVDGIQRVVCGVSEQTTCQEVVIALAQAIGQTGRFVLVQRLREKERQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MLLGLAAMELKVWVDGIQRVVCGVSEQTTCQEVVIALAQAIGQTGRFVLVQRLREKERQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LPQECPVGAQATCGQFASDVQFVLRRTGPSLAGRPSSDSCPPPERCLIRASLPVKPRAAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LPQECPVGAQATCGQFASDVQFVLRRTGPSLAGRPSSDSCPPPERCLIRASLPVKPRAAL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 GCEPRKTLTPEPAPSLSRPGPAAPVTPTPGCCTDLRGLELRVQRNAEELGHEAFWEQELR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GCEPRKTLTPEPAPSLSRPGPAAPVTPTPGCCTDLRGLELRVQRNAEELGHEAFWEQELR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 REQAREREGQARLQALSAATAEHAARLQALDAQARALEAELQLAAEAPGPPSPMASATER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 REQAREREGQARLQALSAATAEHAARLQALDAQARALEAELQLAAEAPGPPSPMASATER
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 LHQDLAVQERQSAEVQGSLALVSRALEAAERALQAQAQELEELNRELRQCNLQQFIQQTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LHQDLAVQERQSAEVQGSLALVSRALEAAERALQAQAQELEELNRELRQCNLQQFIQQTG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 AALPPPPRPDRGPPGTQGPLPPAREESLLGAPSESHAGAQPRPRGGPHDAELLEVAAAPA
::::::::::::::::: :
CCDS44 AALPPPPRPDRGPPGTQWPP
310 320
>>CCDS44506.1 RASSF7 gene_id:8045|Hs108|chr11 (337 aa)
initn: 2114 init1: 2114 opt: 2114 Z-score: 1342.8 bits: 257.0 E(32554): 1.8e-68
Smith-Waterman score: 2114; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317)
10 20 30 40 50 60
pF1KB3 MLLGLAAMELKVWVDGIQRVVCGVSEQTTCQEVVIALAQAIGQTGRFVLVQRLREKERQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MLLGLAAMELKVWVDGIQRVVCGVSEQTTCQEVVIALAQAIGQTGRFVLVQRLREKERQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LPQECPVGAQATCGQFASDVQFVLRRTGPSLAGRPSSDSCPPPERCLIRASLPVKPRAAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LPQECPVGAQATCGQFASDVQFVLRRTGPSLAGRPSSDSCPPPERCLIRASLPVKPRAAL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 GCEPRKTLTPEPAPSLSRPGPAAPVTPTPGCCTDLRGLELRVQRNAEELGHEAFWEQELR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GCEPRKTLTPEPAPSLSRPGPAAPVTPTPGCCTDLRGLELRVQRNAEELGHEAFWEQELR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 REQAREREGQARLQALSAATAEHAARLQALDAQARALEAELQLAAEAPGPPSPMASATER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 REQAREREGQARLQALSAATAEHAARLQALDAQARALEAELQLAAEAPGPPSPMASATER
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 LHQDLAVQERQSAEVQGSLALVSRALEAAERALQAQAQELEELNRELRQCNLQQFIQQTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LHQDLAVQERQSAEVQGSLALVSRALEAAERALQAQAQELEELNRELRQCNLQQFIQQTG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 AALPPPPRPDRGPPGTQGPLPPAREESLLGAPSESHAGAQPRPRGGPHDAELLEVAAAPA
:::::::::::::::::
CCDS44 AALPPPPRPDRGPPGTQVGVVLGGGWEVRTWPSPTPS
310 320 330
>>CCDS8705.1 RASSF8 gene_id:11228|Hs108|chr12 (392 aa)
initn: 760 init1: 434 opt: 483 Z-score: 320.8 bits: 68.1 E(32554): 1.5e-11
Smith-Waterman score: 648; 37.9% identity (56.6% similar) in 369 aa overlap (8-307:1-367)
10 20 30 40 50 60
pF1KB3 MLLGLAAMELKVWVDGIQRVVCGVSEQTTCQEVVIALAQAIGQTGRFVLVQRLREKERQL
:::::::::.::.::::.: :::::::::::::::.:::..:... :. ::.:
CCDS87 MELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHL
10 20 30 40 50
70 80 90 100 110
pF1KB3 LPQECPVGAQATCGQFASDVQFVLRRTGPSLAGRPSSDSCPP-PERCLIRASLPVKPRAA
:.: :. . ::.:::::..::::::::. ::.::: ::: : : ::: : :
CCDS87 APHENPIISLNKWGQYASDVQLILRRTGPSLSERPTSDSVARIPERTLYRQSLP--PLAK
60 70 80 90 100 110
120 130 140 150
pF1KB3 LGCEPRKTLTP-EPA-PSLSRPGPAAPVTPTPG--------------CCT---DLRGL--
: . :.. :: ::. : : . : : : .:. :
CCDS87 LRPQIDKSIKRREPKRKSLTFTGGAKGLMDIFGKGKETEFKQKVLNNCKTTADELKKLIR
120 130 140 150 160 170
160 170 180
pF1KB3 --------------------------------------ELRVQRNAEELGHEAFWEQELR
: ...:: :. .: :::.::.
CCDS87 LQTEKLQSIEKQLESNEIEIRFWEQKYNSNLEEEIVRLEQKIKRNDVEIEEEEFWENELQ
180 190 200 210 220 230
190 200 210 220 230
pF1KB3 REQAREREGQARLQALSAATAEHAARLQALDAQARALEAELQL------AAEAPGPPSPM
:: :.. . .:: . .: .:. :: :..:. :. . :: .
CCDS87 IEQENEKQLKDQLQEIRQKITECENKLKDYLAQIRTMESGLEAEKLQREVQEAQVNEEEV
240 250 260 270 280 290
240 250 260 270 280 290
pF1KB3 ASATERLHQDLAVQERQSAEVQGSLALVSRALEAAERALQAQAQELEELNRELRQCNLQQ
. ... .. .: .:: ...... : :.: : . :: . ::::.:..:::: ::::
CCDS87 KGKIGKVKGEIDIQGQQSLRLENGIKAVERSLGQATKRLQDKEQELEQLTKELRQVNLQQ
300 310 320 330 340 350
300 310 320 330 340 350
pF1KB3 FIQQTGA---ALPPPPRPDRGPPGTQGPLPPAREESLLGAPSESHAGAQPRPRGGPHDAE
::::::. .:: :
CCDS87 FIQQTGTKVTVLPAEPIEIEASHADIERGIIILSDKQECKD
360 370 380 390
>>CCDS53765.1 RASSF8 gene_id:11228|Hs108|chr12 (419 aa)
initn: 760 init1: 434 opt: 483 Z-score: 320.4 bits: 68.1 E(32554): 1.6e-11
Smith-Waterman score: 648; 37.9% identity (56.6% similar) in 369 aa overlap (8-307:1-367)
10 20 30 40 50 60
pF1KB3 MLLGLAAMELKVWVDGIQRVVCGVSEQTTCQEVVIALAQAIGQTGRFVLVQRLREKERQL
:::::::::.::.::::.: :::::::::::::::.:::..:... :. ::.:
CCDS53 MELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHL
10 20 30 40 50
70 80 90 100 110
pF1KB3 LPQECPVGAQATCGQFASDVQFVLRRTGPSLAGRPSSDSCPP-PERCLIRASLPVKPRAA
:.: :. . ::.:::::..::::::::. ::.::: ::: : : ::: : :
CCDS53 APHENPIISLNKWGQYASDVQLILRRTGPSLSERPTSDSVARIPERTLYRQSLP--PLAK
60 70 80 90 100 110
120 130 140 150
pF1KB3 LGCEPRKTLTP-EPA-PSLSRPGPAAPVTPTPG--------------CCT---DLRGL--
: . :.. :: ::. : : . : : : .:. :
CCDS53 LRPQIDKSIKRREPKRKSLTFTGGAKGLMDIFGKGKETEFKQKVLNNCKTTADELKKLIR
120 130 140 150 160 170
160 170 180
pF1KB3 --------------------------------------ELRVQRNAEELGHEAFWEQELR
: ...:: :. .: :::.::.
CCDS53 LQTEKLQSIEKQLESNEIEIRFWEQKYNSNLEEEIVRLEQKIKRNDVEIEEEEFWENELQ
180 190 200 210 220 230
190 200 210 220 230
pF1KB3 REQAREREGQARLQALSAATAEHAARLQALDAQARALEAELQL------AAEAPGPPSPM
:: :.. . .:: . .: .:. :: :..:. :. . :: .
CCDS53 IEQENEKQLKDQLQEIRQKITECENKLKDYLAQIRTMESGLEAEKLQREVQEAQVNEEEV
240 250 260 270 280 290
240 250 260 270 280 290
pF1KB3 ASATERLHQDLAVQERQSAEVQGSLALVSRALEAAERALQAQAQELEELNRELRQCNLQQ
. ... .. .: .:: ...... : :.: : . :: . ::::.:..:::: ::::
CCDS53 KGKIGKVKGEIDIQGQQSLRLENGIKAVERSLGQATKRLQDKEQELEQLTKELRQVNLQQ
300 310 320 330 340 350
300 310 320 330 340 350
pF1KB3 FIQQTGA---ALPPPPRPDRGPPGTQGPLPPAREESLLGAPSESHAGAQPRPRGGPHDAE
::::::. .:: :
CCDS53 FIQQTGTKVTVLPAEPIEIEASHADIEREAPFQSGSLKRPGSSRQLPSNLRILQNPISSG
360 370 380 390 400 410
373 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:35:49 2016 done: Fri Nov 4 02:35:49 2016
Total Scan time: 3.300 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]