FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3512, 414 aa
  1>>>pF1KB3512 414 - 414 aa - 414 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4921+/-0.00124; mu= 8.5908+/- 0.074
 mean_var=235.7283+/-52.063, 0's: 0 Z-trim(108.7): 83  B-trim: 4 in 1/49
 Lambda= 0.083535
 statistics sampled from 10285 (10356) to 10285 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.318), width:  16
 Scan time:  2.220

The best scores are:                                      opt bits E(32554)
CCDS122.1 TARDBP gene_id:23435|Hs108|chr1          ( 414) 2826 354.0 1.5e-97


>>CCDS122.1 TARDBP gene_id:23435|Hs108|chr1               (414 aa)
 initn: 2826 init1: 2826 opt: 2826  Z-score: 1864.6  bits: 354.0 E(32554): 1.5e-97
Smith-Waterman score: 2826; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414)

               10        20        30        40        50        60
pF1KB3 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
              310       320       330       340       350       360

              370       380       390       400       410    
pF1KB3 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
              370       380       390       400       410    




414 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 13:28:17 2016 done: Thu Nov  3 13:28:17 2016
 Total Scan time:  2.220 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]