Result of FASTA (omim) for
pF1KB3502
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3502, 243 aa
1>>>pF1KB3502 243 - 243 aa - 243 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8839+/-0.000374; mu= 13.4005+/- 0.023
mean_var=99.0987+/-19.738, 0's: 0 Z-trim(114.8): 9 B-trim: 1261 in 1/50
Lambda= 0.128837
statistics sampled from 24883 (24889) to 24883 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.292), width: 16
Scan time: 5.900
The best scores are: opt bits E(85289)
NP_004729 (OMIM: 182980,605704,608627) vesicle-ass ( 243) 1570 301.8 7.2e-82
NP_919415 (OMIM: 605703) vesicle-associated membra ( 249) 1014 198.4 9.4e-51
XP_016881568 (OMIM: 605703) PREDICTED: vesicle-ass ( 236) 934 183.6 2.7e-46
NP_003565 (OMIM: 605703) vesicle-associated membra ( 294) 761 151.5 1.5e-36
XP_011524071 (OMIM: 605703) PREDICTED: vesicle-ass ( 281) 681 136.6 4.4e-32
NP_001182606 (OMIM: 182980,605704,608627) vesicle- ( 99) 467 96.4 1.9e-20
>>NP_004729 (OMIM: 182980,605704,608627) vesicle-associa (243 aa)
initn: 1570 init1: 1570 opt: 1570 Z-score: 1590.8 bits: 301.8 E(85289): 7.2e-82
Smith-Waterman score: 1570; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)
10 20 30 40 50 60
pF1KB3 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 IDAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IDAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 CVFELPAENDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECKRLQGEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 CVFELPAENDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECKRLQGEV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 QRLREENKQFKEEDGLRMRKTVQSNSPISALAPTGKEEGLSTRLLALVVLFFIVGVIIGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QRLREENKQFKEEDGLRMRKTVQSNSPISALAPTGKEEGLSTRLLALVVLFFIVGVIIGK
190 200 210 220 230 240
pF1KB3 IAL
:::
NP_004 IAL
>>NP_919415 (OMIM: 605703) vesicle-associated membrane p (249 aa)
initn: 990 init1: 800 opt: 1014 Z-score: 1032.1 bits: 198.4 E(85289): 9.4e-51
Smith-Waterman score: 1014; 62.9% identity (85.3% similar) in 245 aa overlap (1-243:8-249)
10 20 30 40 50
pF1KB3 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYC
::: ::.: :.: .:::.::::::::::::: ::.::.::::::::::::::
NP_919 MASASGAMAKHEQILVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 VRPNSGIIDAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPED
::::::::: :....:::::::::::::::::::::::..::: .:::::::::::::..
NP_919 VRPNSGIIDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB3 LMDSKLRCVFELPAENDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEEC
:::::::::::.: :::: .:.: .: . .::: . :. : : ::.:::..:.::::
NP_919 LMDSKLRCVFEMPNENDKLNDMEPSKAVPLNASKQDGPM-PKPHSVSLNDTETRKLMEEC
130 140 150 160 170
180 190 200 210 220 230
pF1KB3 KRLQGEVQRLREENKQFKEEDGLRMRKTVQSNSPISALAPTGKEEGLST--RLLALVVLF
::::::...: :::.....: :::.::...:..: :. . . ... : ::.... .
NP_919 KRLQGEMMKLSEENRHLRDE-GLRLRKVAHSDKPGSTSTASFRDNVTSPLPSLLVVIAAI
180 190 200 210 220 230
240
pF1KB3 FIVGVIIGKIAL
:: : ..::. :
NP_919 FI-GFFLGKFIL
240
>>XP_016881568 (OMIM: 605703) PREDICTED: vesicle-associa (236 aa)
initn: 910 init1: 720 opt: 934 Z-score: 952.1 bits: 183.6 E(85289): 2.7e-46
Smith-Waterman score: 934; 63.1% identity (85.8% similar) in 225 aa overlap (21-243:15-236)
10 20 30 40 50 60
pF1KB3 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGI
:::::::::::: ::.::.:::::::::::::::::::::
XP_016 MLQSKYSKMFIVECPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGI
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 IDAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLR
:: :....:::::::::::::::::::::::..::: .:::::::::::::..:::::::
XP_016 IDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLR
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 CVFELPAENDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECKRLQGEV
::::.: :::: .:.: .: . .::: . :. : : ::.:::..:.::::::::::.
XP_016 CVFEMPNENDKLNDMEPSKAVPLNASKQDGPM-PKPHSVSLNDTETRKLMEECKRLQGEM
120 130 140 150 160 170
190 200 210 220 230
pF1KB3 QRLREENKQFKEEDGLRMRKTVQSNSPISALAPTGKEEGLST--RLLALVVLFFIVGVII
..: :::.....: :::.::...:..: :. . . ... : ::.... .:: : ..
XP_016 MKLSEENRHLRDE-GLRLRKVAHSDKPGSTSTASFRDNVTSPLPSLLVVIAAIFI-GFFL
180 190 200 210 220 230
240
pF1KB3 GKIAL
::. :
XP_016 GKFIL
>>NP_003565 (OMIM: 605703) vesicle-associated membrane p (294 aa)
initn: 982 init1: 756 opt: 761 Z-score: 777.0 bits: 151.5 E(85289): 1.5e-36
Smith-Waterman score: 897; 54.2% identity (73.5% similar) in 275 aa overlap (1-230:8-279)
10 20 30 40 50
pF1KB3 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYC
::: ::.: :.: .:::.::::::::::::: ::.::.::::::::::::::
NP_003 MASASGAMAKHEQILVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 VRPNSGIIDAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPED
::::::::: :....:::::::::::::::::::::::..::: .:::::::::::::..
NP_003 VRPNSGIIDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDE
70 80 90 100 110 120
120 130
pF1KB3 LMDSKLRCVFELPAENDK----P-------------------------------------
:::::::::::.: :::: :
NP_003 LMDSKLRCVFEMPNENDKLGITPPGNAPTVTSMSSINNTVATPASYHTKDDPRGLSVLKQ
130 140 150 160 170 180
140 150 160 170 180
pF1KB3 ----HDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECKRLQGEVQRLREENK
.:.: .: . .::: . :. : : ::.:::..:.::::::::::...: :::.
NP_003 EKQKNDMEPSKAVPLNASKQDGPM-PKPHSVSLNDTETRKLMEECKRLQGEMMKLSEENR
190 200 210 220 230
190 200 210 220 230 240
pF1KB3 QFKEEDGLRMRKTVQSNSPISALAPTGKEEGLSTRLLALVVLFFIVGVIIGKIAL
....: :::.::...:..: :. . . ... ... : .:.:.
NP_003 HLRDE-GLRLRKVAHSDKPGSTSTASFRDN-VTSPLPSLLVVIAAIFIGFFLGKFIL
240 250 260 270 280 290
>>XP_011524071 (OMIM: 605703) PREDICTED: vesicle-associa (281 aa)
initn: 902 init1: 676 opt: 681 Z-score: 696.9 bits: 136.6 E(85289): 4.4e-32
Smith-Waterman score: 817; 53.7% identity (72.9% similar) in 255 aa overlap (21-230:15-266)
10 20 30 40 50 60
pF1KB3 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGI
:::::::::::: ::.::.:::::::::::::::::::::
XP_011 MLQSKYSKMFIVECPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGI
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 IDAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLR
:: :....:::::::::::::::::::::::..::: .:::::::::::::..:::::::
XP_011 IDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLR
60 70 80 90 100 110
130
pF1KB3 CVFELPAENDK----P-----------------------------------------HDV
::::.: :::: : .:.
XP_011 CVFEMPNENDKLGITPPGNAPTVTSMSSINNTVATPASYHTKDDPRGLSVLKQEKQKNDM
120 130 140 150 160 170
140 150 160 170 180 190
pF1KB3 EINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECKRLQGEVQRLREENKQFKEEDG
: .: . .::: . :. : : ::.:::..:.::::::::::...: :::.....: :
XP_011 EPSKAVPLNASKQDGPM-PKPHSVSLNDTETRKLMEECKRLQGEMMKLSEENRHLRDE-G
180 190 200 210 220 230
200 210 220 230 240
pF1KB3 LRMRKTVQSNSPISALAPTGKEEGLSTRLLALVVLFFIVGVIIGKIAL
::.::...:..: :. . . ... ... : .:.:.
XP_011 LRLRKVAHSDKPGSTSTASFRDN-VTSPLPSLLVVIAAIFIGFFLGKFIL
240 250 260 270 280
>>NP_001182606 (OMIM: 182980,605704,608627) vesicle-asso (99 aa)
initn: 463 init1: 463 opt: 467 Z-score: 488.1 bits: 96.4 E(85289): 1.9e-20
Smith-Waterman score: 467; 80.0% identity (87.8% similar) in 90 aa overlap (1-90:1-90)
10 20 30 40 50 60
pF1KB3 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 IDAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLR
:::::::::: : . . ... .: .
NP_001 IDAGASINVSGRRWTADEEDSAEQQPHFSISPNWEGRRP
70 80 90
243 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:11:58 2016 done: Sat Nov 5 05:11:59 2016
Total Scan time: 5.900 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]