Result of FASTA (omim) for
pF1KB3490
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3490, 337 aa
1>>>pF1KB3490 337 - 337 aa - 337 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8936+/-0.000407; mu= 12.7792+/- 0.025
mean_var=77.2630+/-15.680, 0's: 0 Z-trim(111.7): 87 B-trim: 53 in 1/54
Lambda= 0.145911
statistics sampled from 20347 (20438) to 20347 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.612), E-opt: 0.2 (0.24), width: 16
Scan time: 6.000
The best scores are: opt bits E(85289)
NP_001193730 (OMIM: 600407) replication factor C s ( 337) 2168 466.2 4.6e-131
NP_031396 (OMIM: 600407) replication factor C subu ( 340) 2147 461.7 9.9e-130
XP_011536945 (OMIM: 600407) PREDICTED: replication ( 340) 2147 461.7 9.9e-130
XP_011536947 (OMIM: 600407) PREDICTED: replication ( 340) 2147 461.7 9.9e-130
NP_853556 (OMIM: 600407) replication factor C subu ( 319) 2001 431.0 1.7e-120
XP_016875268 (OMIM: 600407) PREDICTED: replication ( 304) 1849 399.0 6.9e-111
NP_001123584 (OMIM: 600407) replication factor C s ( 255) 1584 343.2 3.7e-94
NP_002907 (OMIM: 102577) replication factor C subu ( 363) 741 165.8 1.3e-40
NP_853551 (OMIM: 102577) replication factor C subu ( 363) 741 165.8 1.3e-40
NP_852136 (OMIM: 600404) replication factor C subu ( 354) 735 164.5 3.1e-40
NP_001265720 (OMIM: 600404) replication factor C s ( 253) 536 122.5 9.3e-28
XP_016867981 (OMIM: 600404) PREDICTED: replication ( 253) 536 122.5 9.3e-28
NP_001265721 (OMIM: 600404) replication factor C s ( 251) 493 113.5 4.9e-25
NP_001265722 (OMIM: 600404) replication factor C s ( 219) 394 92.6 8.2e-19
NP_002905 (OMIM: 600404) replication factor C subu ( 320) 396 93.1 8.5e-19
XP_006716143 (OMIM: 600404) PREDICTED: replication ( 217) 385 90.7 3e-18
XP_016867982 (OMIM: 600404) PREDICTED: replication ( 217) 385 90.7 3e-18
NP_002906 (OMIM: 600405) replication factor C subu ( 356) 247 61.8 2.6e-09
XP_016876172 (OMIM: 600405) PREDICTED: replication ( 291) 235 59.2 1.2e-08
XP_016876171 (OMIM: 600405) PREDICTED: replication ( 293) 235 59.2 1.3e-08
XP_016876170 (OMIM: 600405) PREDICTED: replication ( 297) 235 59.2 1.3e-08
XP_011533476 (OMIM: 600405) PREDICTED: replication ( 297) 235 59.2 1.3e-08
XP_011533477 (OMIM: 600405) PREDICTED: replication ( 297) 235 59.2 1.3e-08
XP_011533475 (OMIM: 600405) PREDICTED: replication ( 298) 235 59.2 1.3e-08
NP_853536 (OMIM: 600405) replication factor C subu ( 305) 235 59.2 1.3e-08
XP_016876169 (OMIM: 600405) PREDICTED: replication ( 313) 235 59.2 1.3e-08
XP_011533474 (OMIM: 600405) PREDICTED: replication ( 343) 235 59.2 1.4e-08
XP_005249289 (OMIM: 608196) PREDICTED: ATPase WRNI ( 419) 172 46.0 0.00017
XP_016866549 (OMIM: 608196) PREDICTED: ATPase WRNI ( 438) 172 46.0 0.00017
NP_569079 (OMIM: 608196) ATPase WRNIP1 isoform 2 [ ( 640) 174 46.5 0.00018
NP_064520 (OMIM: 608196) ATPase WRNIP1 isoform 1 [ ( 665) 172 46.1 0.00025
>>NP_001193730 (OMIM: 600407) replication factor C subun (337 aa)
initn: 2168 init1: 2168 opt: 2168 Z-score: 2474.0 bits: 466.2 E(85289): 4.6e-131
Smith-Waterman score: 2168; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337)
10 20 30 40 50 60
pF1KB3 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 PPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 LMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 HPLKSDIANILDWMLNQDFTTAYRKLKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HPLKSDIANILDWMLNQDFTTAYRKLKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLT
250 260 270 280 290 300
310 320 330
pF1KB3 KMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
:::::::::::::::::::::::::::::::::::::
NP_001 KMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
310 320 330
>>NP_031396 (OMIM: 600407) replication factor C subunit (340 aa)
initn: 1737 init1: 1737 opt: 2147 Z-score: 2450.1 bits: 461.7 E(85289): 9.9e-130
Smith-Waterman score: 2147; 98.8% identity (99.1% similar) in 340 aa overlap (1-337:1-340)
10 20 30 40 50 60
pF1KB3 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 PPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 PPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 LMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 LMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTG
190 200 210 220 230 240
250 260 270 280 290
pF1KB3 HPLKSDIANILDWMLNQDFTTAYR---KLKTLKGLALHDILTEIHLFVHRVDFPSSVRIH
:::::::::::::::::::::::: .::::::::::::::::::::::::::::::::
NP_031 HPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIH
250 260 270 280 290 300
300 310 320 330
pF1KB3 LLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
::::::::::::::::::::::::::::::::::::::::
NP_031 LLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
310 320 330 340
>>XP_011536945 (OMIM: 600407) PREDICTED: replication fac (340 aa)
initn: 1737 init1: 1737 opt: 2147 Z-score: 2450.1 bits: 461.7 E(85289): 9.9e-130
Smith-Waterman score: 2147; 98.8% identity (99.1% similar) in 340 aa overlap (1-337:1-340)
10 20 30 40 50 60
pF1KB3 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 PPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 LMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTG
190 200 210 220 230 240
250 260 270 280 290
pF1KB3 HPLKSDIANILDWMLNQDFTTAYR---KLKTLKGLALHDILTEIHLFVHRVDFPSSVRIH
:::::::::::::::::::::::: .::::::::::::::::::::::::::::::::
XP_011 HPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIH
250 260 270 280 290 300
300 310 320 330
pF1KB3 LLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
::::::::::::::::::::::::::::::::::::::::
XP_011 LLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
310 320 330 340
>>XP_011536947 (OMIM: 600407) PREDICTED: replication fac (340 aa)
initn: 1737 init1: 1737 opt: 2147 Z-score: 2450.1 bits: 461.7 E(85289): 9.9e-130
Smith-Waterman score: 2147; 98.8% identity (99.1% similar) in 340 aa overlap (1-337:1-340)
10 20 30 40 50 60
pF1KB3 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 PPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 LMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTG
190 200 210 220 230 240
250 260 270 280 290
pF1KB3 HPLKSDIANILDWMLNQDFTTAYR---KLKTLKGLALHDILTEIHLFVHRVDFPSSVRIH
:::::::::::::::::::::::: .::::::::::::::::::::::::::::::::
XP_011 HPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIH
250 260 270 280 290 300
300 310 320 330
pF1KB3 LLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
::::::::::::::::::::::::::::::::::::::::
XP_011 LLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
310 320 330 340
>>NP_853556 (OMIM: 600407) replication factor C subunit (319 aa)
initn: 1591 init1: 1591 opt: 2001 Z-score: 2284.4 bits: 431.0 E(85289): 1.7e-120
Smith-Waterman score: 2001; 98.7% identity (99.1% similar) in 318 aa overlap (23-337:2-319)
10 20 30 40 50 60
pF1KB3 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYG
::::::::::::::::::::::::::::::::::::::
NP_853 MVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYG
10 20 30
70 80 90 100 110 120
pF1KB3 PPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_853 PPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFK
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB3 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_853 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB3 LMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_853 LMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTG
160 170 180 190 200 210
250 260 270 280 290
pF1KB3 HPLKSDIANILDWMLNQDFTTAYR---KLKTLKGLALHDILTEIHLFVHRVDFPSSVRIH
:::::::::::::::::::::::: .::::::::::::::::::::::::::::::::
NP_853 HPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIH
220 230 240 250 260 270
300 310 320 330
pF1KB3 LLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
::::::::::::::::::::::::::::::::::::::::
NP_853 LLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
280 290 300 310
>>XP_016875268 (OMIM: 600407) PREDICTED: replication fac (304 aa)
initn: 1737 init1: 1737 opt: 1849 Z-score: 2111.8 bits: 399.0 E(85289): 6.9e-111
Smith-Waterman score: 1849; 95.3% identity (97.3% similar) in 301 aa overlap (1-296:1-301)
10 20 30 40 50 60
pF1KB3 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 PPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 LMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTG
190 200 210 220 230 240
250 260 270 280 290
pF1KB3 HPLKSDIANILDWMLNQDFTTAYR---KLKTLKGLALHDILTEIHLFVHR--VDFPSSVR
:::::::::::::::::::::::: .:::::::::::::::::::::: . .: . .
XP_016 HPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRGNLHYPPAEK
250 260 270 280 290 300
300 310 320 330
pF1KB3 IHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
.
XP_016 LWRR
>>NP_001123584 (OMIM: 600407) replication factor C subun (255 aa)
initn: 1174 init1: 1174 opt: 1584 Z-score: 1811.5 bits: 343.2 E(85289): 3.7e-94
Smith-Waterman score: 1584; 98.4% identity (98.8% similar) in 255 aa overlap (86-337:1-255)
60 70 80 90 100 110
pF1KB3 LLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIF
::::::::::::::::::::::::::::::
NP_001 MVLELNASDDRGIDIIRGPILSFASTRTIF
10 20 30
120 130 140 150 160 170
pF1KB3 KKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFG
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB3 PLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETV
100 110 120 130 140 150
240 250 260 270 280 290
pF1KB3 YTCTGHPLKSDIANILDWMLNQDFTTAYR---KLKTLKGLALHDILTEIHLFVHRVDFPS
::::::::::::::::::::::::::::: .:::::::::::::::::::::::::::
NP_001 YTCTGHPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPS
160 170 180 190 200 210
300 310 320 330
pF1KB3 SVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
220 230 240 250
>>NP_002907 (OMIM: 102577) replication factor C subunit (363 aa)
initn: 714 init1: 388 opt: 741 Z-score: 850.1 bits: 165.8 E(85289): 1.3e-40
Smith-Waterman score: 741; 40.0% identity (70.9% similar) in 320 aa overlap (16-324:34-353)
10 20 30 40
pF1KB3 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQ
: . .::::::::. .... .........
NP_002 FLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB3 KFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPI
: .. ::.::.:::::::::::::: :..:. . : ::::::::.:::...: .
NP_002 KSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKV
70 80 90 100 110 120
110 120 130 140 150
pF1KB3 LSFAS-----TRTIFKK--GFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL
.::. .:. : ::.:::::::.::. :: ::::..:: ...:::::::::.
NP_002 KNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB3 SKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALN
:.:: : :::..::: ::. ... :: ....:.: ::..:. :: .: ::.:.:..
NP_002 SRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAIT
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB3 ILQS-TNMAFGK-VTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRKLKTL--KGLAL
.::: : .. :: .::... .: : ... . .: .: : .: :
NP_002 FLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAA
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB3 HDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIV
......: : . .. .. . . :.:... :. :..:..:: :: :
NP_002 TQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLSQNC
310 320 330 340 350 360
pF1KB3 AEA
>>NP_853551 (OMIM: 102577) replication factor C subunit (363 aa)
initn: 714 init1: 388 opt: 741 Z-score: 850.1 bits: 165.8 E(85289): 1.3e-40
Smith-Waterman score: 741; 40.0% identity (70.9% similar) in 320 aa overlap (16-324:34-353)
10 20 30 40
pF1KB3 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQ
: . .::::::::. .... .........
NP_853 FLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB3 KFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPI
: .. ::.::.:::::::::::::: :..:. . : ::::::::.:::...: .
NP_853 KSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKV
70 80 90 100 110 120
110 120 130 140 150
pF1KB3 LSFAS-----TRTIFKK--GFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL
.::. .:. : ::.:::::::.::. :: ::::..:: ...:::::::::.
NP_853 KNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB3 SKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALN
:.:: : :::..::: ::. ... :: ....:.: ::..:. :: .: ::.:.:..
NP_853 SRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAIT
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB3 ILQS-TNMAFGK-VTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRKLKTL--KGLAL
.::: : .. :: .::... .: : ... . .: .: : .: :
NP_853 FLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAA
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB3 HDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIV
......: : . .. .. . . :.:... :. :..:..:: :: :
NP_853 TQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLSQNC
310 320 330 340 350 360
pF1KB3 AEA
>>NP_852136 (OMIM: 600404) replication factor C subunit (354 aa)
initn: 673 init1: 573 opt: 735 Z-score: 843.4 bits: 164.5 E(85289): 3.1e-40
Smith-Waterman score: 735; 37.0% identity (70.3% similar) in 316 aa overlap (12-324:28-342)
10 20 30 40
pF1KB3 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTI
:... .::::::::: ::......: .: .
NP_852 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB3 QKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGP
. : : .:.... ::::::::..:: :. : . . .::::::.:::::..:.
NP_852 EVFAREGNVPNIIIAGPPGTGKTTSILCLARALL-GPALKDAMLELNASNDRGIDVVRNK
70 80 90 100 110
110 120 130 140 150 160
pF1KB3 ILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIP
: ::. .. . :: :..::::::.::. ::.::::..: ....::: : :: .:::
NP_852 IKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIE
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB3 ALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQST
.::::. .:. :: .. :: .:.:.:.: ..::..:.. ..::::.::: ::::
NP_852 PIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQST
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB3 NMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRKLKTLK--GLALHDILTEI
.:: .. :.:. .: . .... .: .. ::. : : : . .::. .:
NP_852 FSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNI
240 250 260 270 280 290
290 300 310 320 330
pF1KB3 HLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
. .. ...... ... ..... :.: .:...:.:
NP_852 FRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
300 310 320 330 340 350
337 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:31:53 2016 done: Fri Nov 4 02:31:54 2016
Total Scan time: 6.000 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]