Result of FASTA (ccds) for
pF1KB3489
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3489, 332 aa
1>>>pF1KB3489 332 - 332 aa - 332 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6769+/-0.000907; mu= 13.7143+/- 0.054
mean_var=63.7367+/-12.784, 0's: 0 Z-trim(105.2): 79 B-trim: 161 in 1/51
Lambda= 0.160650
statistics sampled from 8223 (8305) to 8223 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.626), E-opt: 0.2 (0.255), width: 16
Scan time: 2.290
The best scores are: opt bits E(32554)
CCDS11982.1 KDSR gene_id:2531|Hs108|chr18 ( 332) 2116 499.2 2e-141
CCDS82092.1 DHRS7B gene_id:25979|Hs108|chr17 ( 310) 310 80.6 1.9e-15
CCDS11215.1 DHRS7B gene_id:25979|Hs108|chr17 ( 325) 310 80.6 1.9e-15
CCDS81810.1 DHRS7 gene_id:51635|Hs108|chr14 ( 289) 296 77.3 1.7e-14
CCDS9743.1 DHRS7 gene_id:51635|Hs108|chr14 ( 339) 296 77.3 1.9e-14
CCDS56020.1 DHRS7C gene_id:201140|Hs108|chr17 ( 312) 295 77.1 2.1e-14
CCDS58517.1 DHRS7C gene_id:201140|Hs108|chr17 ( 311) 294 76.9 2.4e-14
CCDS12223.2 RDH8 gene_id:50700|Hs108|chr19 ( 331) 292 76.4 3.6e-14
CCDS6167.1 SDR16C5 gene_id:195814|Hs108|chr8 ( 309) 277 72.9 3.7e-13
CCDS83296.1 SDR16C5 gene_id:195814|Hs108|chr8 ( 318) 277 72.9 3.8e-13
CCDS3812.1 CBR4 gene_id:84869|Hs108|chr4 ( 237) 272 71.7 6.5e-13
CCDS1489.1 HSD11B1 gene_id:3290|Hs108|chr1 ( 292) 263 69.7 3.3e-12
CCDS4126.1 HSD17B4 gene_id:3295|Hs108|chr5 ( 736) 264 70.0 6.6e-12
CCDS32104.1 RDH11 gene_id:51109|Hs108|chr14 ( 318) 246 65.7 5.6e-11
>>CCDS11982.1 KDSR gene_id:2531|Hs108|chr18 (332 aa)
initn: 2116 init1: 2116 opt: 2116 Z-score: 2652.7 bits: 499.2 E(32554): 2e-141
Smith-Waterman score: 2116; 100.0% identity (100.0% similar) in 332 aa overlap (1-332:1-332)
10 20 30 40 50 60
pF1KB3 MLLLAAAFLVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MLLLAAAFLVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LVARNEDKLLQAKKEIEMHSINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LVARNEDKLLQAKKEIEMHSINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 CAGMAVSGKFEDLEVSTFERLMSINYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 CAGMAVSGKFEDLEVSTFERLMSINYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 FGFTAYSASKFAIRGLAEALQMEVKPYNVYITVAYPPDTDTPGFAEENRTKPLETRLISE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FGFTAYSASKFAIRGLAEALQMEVKPYNVYITVAYPPDTDTPGFAEENRTKPLETRLISE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 TTSVCKPEQVAKQIVKDAIQGNFNSSLGSDGYMLSALTCGMAPVTSITEGLQQVVTMGLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TTSVCKPEQVAKQIVKDAIQGNFNSSLGSDGYMLSALTCGMAPVTSITEGLQQVVTMGLF
250 260 270 280 290 300
310 320 330
pF1KB3 RTIALFYLGSFDSIVRRCMMQREKSENADKTA
::::::::::::::::::::::::::::::::
CCDS11 RTIALFYLGSFDSIVRRCMMQREKSENADKTA
310 320 330
>>CCDS82092.1 DHRS7B gene_id:25979|Hs108|chr17 (310 aa)
initn: 308 init1: 234 opt: 310 Z-score: 391.0 bits: 80.6 E(32554): 1.9e-15
Smith-Waterman score: 310; 32.3% identity (61.9% similar) in 189 aa overlap (30-216:35-222)
10 20 30 40 50
pF1KB3 MLLLAAAFLVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFI
: .: ::.::..::.:: : : :: .
CCDS82 TSTAILPLLFGCLGVFGLFRLLQWVRGKAYLRNAVVVITGATSGLGKECAKVFYAAGAKL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 TLVARNEDKLLQAKKEIEMHSINDKQV--VLCISVDVSQDYNQVENVIKQAQEKLGPVDM
.: .:: : . .:. . :. .. :.. : . . . . . .: ::.
CCDS82 VLCGRNGGALEELIRELTASHATKVQTHKPYLVTFDLT-DSGAIVAAAAEILQCFGYVDI
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB3 LVNCAGMAVSGKFEDLEVSTFERLMSINYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQ
::: ::.. : . : :.. .:.: ::.: : ..:.. .: .:: :.:: .:: :.
CCDS82 LVNNAGISYRGTIMDTTVDVDKRVMETNYFGPVALTKALLPSMIKRRQGHIVAISSIQGK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB3 LGLFGFTAYSASKFAIRGLAEALQMEVKPYNVYITVAYPPDTDTPGFAEENRTKPLETRL
... .::.::: : ... . :. :.. :.. .:: :
CCDS82 MSIPFRSAYAASKHATQAFFDCLRAEMEQYEIEVTVISPGYIHTNLSVNAITADGSRYGV
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB3 ISETTSVCKPEQVAKQIVKDAIQGNFNSSLGSDGYMLSALTCGMAPVTSITEGLQQVVTM
CCDS82 MDTTTAQGRSPVEVAQDVLAAVGKKKKDVILADLLPSLAVYLRTLAPGLFFSLMASRARK
250 260 270 280 290 300
>>CCDS11215.1 DHRS7B gene_id:25979|Hs108|chr17 (325 aa)
initn: 308 init1: 234 opt: 310 Z-score: 390.6 bits: 80.6 E(32554): 1.9e-15
Smith-Waterman score: 310; 32.3% identity (61.9% similar) in 189 aa overlap (30-216:50-237)
10 20 30 40 50
pF1KB3 MLLLAAAFLVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFI
: .: ::.::..::.:: : : :: .
CCDS11 TSTAILPLLFGCLGVFGLFRLLQWVRGKAYLRNAVVVITGATSGLGKECAKVFYAAGAKL
20 30 40 50 60 70
60 70 80 90 100 110
pF1KB3 TLVARNEDKLLQAKKEIEMHSINDKQV--VLCISVDVSQDYNQVENVIKQAQEKLGPVDM
.: .:: : . .:. . :. .. :.. : . . . . . .: ::.
CCDS11 VLCGRNGGALEELIRELTASHATKVQTHKPYLVTFDLT-DSGAIVAAAAEILQCFGYVDI
80 90 100 110 120 130
120 130 140 150 160 170
pF1KB3 LVNCAGMAVSGKFEDLEVSTFERLMSINYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQ
::: ::.. : . : :.. .:.: ::.: : ..:.. .: .:: :.:: .:: :.
CCDS11 LVNNAGISYRGTIMDTTVDVDKRVMETNYFGPVALTKALLPSMIKRRQGHIVAISSIQGK
140 150 160 170 180 190
180 190 200 210 220 230
pF1KB3 LGLFGFTAYSASKFAIRGLAEALQMEVKPYNVYITVAYPPDTDTPGFAEENRTKPLETRL
... .::.::: : ... . :. :.. :.. .:: :
CCDS11 MSIPFRSAYAASKHATQAFFDCLRAEMEQYEIEVTVISPGYIHTNLSVNAITADGSRYGV
200 210 220 230 240 250
240 250 260 270 280 290
pF1KB3 ISETTSVCKPEQVAKQIVKDAIQGNFNSSLGSDGYMLSALTCGMAPVTSITEGLQQVVTM
CCDS11 MDTTTAQGRSPVEVAQDVLAAVGKKKKDVILADLLPSLAVYLRTLAPGLFFSLMASRARK
260 270 280 290 300 310
>>CCDS81810.1 DHRS7 gene_id:51635|Hs108|chr14 (289 aa)
initn: 256 init1: 177 opt: 296 Z-score: 373.9 bits: 77.3 E(32554): 1.7e-14
Smith-Waterman score: 305; 27.7% identity (59.8% similar) in 264 aa overlap (35-294:3-234)
10 20 30 40 50 60
pF1KB3 AAAFLVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVAR
: :::.:::::. .: . : :. ..: ::
CCDS81 MVVWVTGASSGIGEELAYQLSKLGVSLVLSAR
10 20 30
70 80 90 100 110 120
pF1KB3 NEDKLLQAKKE-IEMHSINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVNCAG
.: ..:.. .: ....:.. : . .:.. : .. : . : . ...: .:.::: .:
CCDS81 RVHELERVKRRCLENGNLKEKDI-LVLPLDLT-DTGSHEAATKAVLQEFGRIDILVNNGG
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB3 MAVSGKFEDLEVSTFERLMSINYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFGF
:. . : ......:. .::::.: .. :. : ::. :.:: :.: : ...
CCDS81 MSQRSLCMDTSLDVYRKLIELNYLGTVSLTKCVLPHMIERKQGKIVTVNSILGIISVPLS
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB3 TAYSASKFAIRGLAEALQMEVKPYNVYITVAYPPDTDTPGFAEENRTKPLETRLISETTS
.: ::: :.::. ..:. :. : ::. :
CCDS81 IGYCASKHALRGFFNGLRTELATY--------------PGIIVSN---------------
160 170 180
250 260 270 280 290 300
pF1KB3 VCKPEQVAKQIVKDAIQGNFNSSLGSDG---YMLSALTCGMAPVTSITEGLQQVVTMGLF
.: : : ..::.... :. ....:..: . ... : . :... :..:
CCDS81 IC-PGPVQSNIVENSLAGEVTKTIGNNGDQSHKMTTSRCVRLMLISMANDLKEVWISEQP
190 200 210 220 230 240
310 320 330
pF1KB3 RTIALFYLGSFDSIVRRCMMQREKSENADKTA
CCDS81 FLLVTYLWQYMPTWAWWITNKMGKKRIENFKSGVDADSSYFKIFKTKHD
250 260 270 280
>>CCDS9743.1 DHRS7 gene_id:51635|Hs108|chr14 (339 aa)
initn: 256 init1: 177 opt: 296 Z-score: 372.8 bits: 77.3 E(32554): 1.9e-14
Smith-Waterman score: 305; 27.7% identity (59.8% similar) in 264 aa overlap (35-294:53-284)
10 20 30 40 50 60
pF1KB3 AAAFLVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVAR
: :::.:::::. .: . : :. ..: ::
CCDS97 LRFLRADGDLTLLWAEWQGRRPEWELTDMVVWVTGASSGIGEELAYQLSKLGVSLVLSAR
30 40 50 60 70 80
70 80 90 100 110 120
pF1KB3 NEDKLLQAKKE-IEMHSINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVNCAG
.: ..:.. .: ....:.. : . .:.. : .. : . : . ...: .:.::: .:
CCDS97 RVHELERVKRRCLENGNLKEKDI-LVLPLDLT-DTGSHEAATKAVLQEFGRIDILVNNGG
90 100 110 120 130 140
130 140 150 160 170 180
pF1KB3 MAVSGKFEDLEVSTFERLMSINYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFGF
:. . : ......:. .::::.: .. :. : ::. :.:: :.: : ...
CCDS97 MSQRSLCMDTSLDVYRKLIELNYLGTVSLTKCVLPHMIERKQGKIVTVNSILGIISVPLS
150 160 170 180 190 200
190 200 210 220 230 240
pF1KB3 TAYSASKFAIRGLAEALQMEVKPYNVYITVAYPPDTDTPGFAEENRTKPLETRLISETTS
.: ::: :.::. ..:. :. : ::. :
CCDS97 IGYCASKHALRGFFNGLRTELATY--------------PGIIVSN---------------
210 220 230
250 260 270 280 290 300
pF1KB3 VCKPEQVAKQIVKDAIQGNFNSSLGSDG---YMLSALTCGMAPVTSITEGLQQVVTMGLF
.: : : ..::.... :. ....:..: . ... : . :... :..:
CCDS97 IC-PGPVQSNIVENSLAGEVTKTIGNNGDQSHKMTTSRCVRLMLISMANDLKEVWISEQP
240 250 260 270 280 290
310 320 330
pF1KB3 RTIALFYLGSFDSIVRRCMMQREKSENADKTA
CCDS97 FLLVTYLWQYMPTWAWWITNKMGKKRIENFKSGVDADSSYFKIFKTKHD
300 310 320 330
>>CCDS56020.1 DHRS7C gene_id:201140|Hs108|chr17 (312 aa)
initn: 218 init1: 165 opt: 295 Z-score: 372.1 bits: 77.1 E(32554): 2.1e-14
Smith-Waterman score: 295; 31.5% identity (63.1% similar) in 222 aa overlap (1-216:6-222)
10 20 30 40 50
pF1KB3 MLLLAAAFL-VAFVLLLYM-VSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECY
::.: .: .. .:..:. :: : : . :. . ::.: . ::.:: : .
CCDS56 MGVMAMLMLPLLLLGISGLLFIYQEVSRLWSKS--AVQNKVVVITDAISGLGKECARVFH
10 20 30 40 50
60 70 80 90 100
pF1KB3 KQGAFITLVARNEDKLLQAKKEIEMHSIND--KQVVL--CISVDVSQDYNQVENVIKQAQ
:: ..: ..: ..: . . :. : ::. . .:.: : . : .: :..
CCDS56 TGGARLVLCGKNWERLENLYDA--LISVADPSKQTFTPKLVLLDLS-DISCVPDVAKEVL
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB3 EKLGPVDMLVNCAGMAVSGKFEDLEVSTFERLMSINYLGSVYPSRAVITTMKERRVGRIV
. : ::.:.: :.. :.: . . . ...:. ::.: . ..:.. .: ::.:.::
CCDS56 DCYGCVDILINNASVKVKGPAHKISLELDKKIMDANYFGPITLTKALLPNMISRRTGQIV
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB3 FVSSQAGQLGLFGFTAYSASKFAIRGLAEALQMEVKPYNVYITVAYPPDTDTPGFAEENR
.:.. :..:. :.:.::: : :. . :. ::. :.: :... :
CCDS56 LVNNIQGKFGIPFRTTYAASKHAALGFFDCLRAEVEEYDVVISTVSPTFIRSYHVYPEQG
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB3 TKPLETRLISETTSVCKPEQVAKQIVKDAIQGNFNSSLGSDGYMLSALTCGMAPVTSITE
CCDS56 NWEASIWKFFFRKLTYGVHPVEVAEEVMRTVRRKKQEVFMANPIPKAAVYVRTFFPEFFF
240 250 260 270 280 290
>>CCDS58517.1 DHRS7C gene_id:201140|Hs108|chr17 (311 aa)
initn: 269 init1: 269 opt: 294 Z-score: 370.9 bits: 76.9 E(32554): 2.4e-14
Smith-Waterman score: 294; 30.8% identity (63.3% similar) in 221 aa overlap (1-216:6-221)
10 20 30 40 50
pF1KB3 MLLLAAAFL-VAFVLLLYM-VSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECY
::.: .: .. .:..:. :: : : . :. . ::.: . ::.:: : .
CCDS58 MGVMAMLMLPLLLLGISGLLFIYQEVSRLWSKS--AVQNKVVVITDAISGLGKECARVFH
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 KQGAFITLVARNEDKLLQAKKEIEMHSINDKQVVLC---ISVDVSQDYNQVENVIKQAQE
:: ..: ..: ..: . . :. : . .. . .:.: : . : .: :.. .
CCDS58 TGGARLVLCGKNWERLENLYDA--LISVADPSKTFTPKLVLLDLS-DISCVPDVAKEVLD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 KLGPVDMLVNCAGMAVSGKFEDLEVSTFERLMSINYLGSVYPSRAVITTMKERRVGRIVF
: ::.:.: :.. :.: . . . ...:. ::.: . ..:.. .: ::.:.::.
CCDS58 CYGCVDILINNASVKVKGPAHKISLELDKKIMDANYFGPITLTKALLPNMISRRTGQIVL
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB3 VSSQAGQLGLFGFTAYSASKFAIRGLAEALQMEVKPYNVYITVAYPPDTDTPGFAEENRT
:.. :..:. :.:.::: : :. . :. ::. :.: :... :
CCDS58 VNNIQGKFGIPFRTTYAASKHAALGFFDCLRAEVEEYDVVISTVSPTFIRSYHVYPEQGN
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB3 KPLETRLISETTSVCKPEQVAKQIVKDAIQGNFNSSLGSDGYMLSALTCGMAPVTSITEG
CCDS58 WEASIWKFFFRKLTYGVHPVEVAEEVMRTVRRKKQEVFMANPIPKAAVYVRTFFPEFFFA
240 250 260 270 280 290
>>CCDS12223.2 RDH8 gene_id:50700|Hs108|chr19 (331 aa)
initn: 288 init1: 247 opt: 292 Z-score: 368.0 bits: 76.4 E(32554): 3.6e-14
Smith-Waterman score: 292; 32.6% identity (64.1% similar) in 184 aa overlap (35-216:28-205)
10 20 30 40 50 60
pF1KB3 AAAFLVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIE-CYKQGAFITLVA
:...: ::::: .:.. . .::
CCDS12 MNGQSQVLPGGGHESREGINMAAAPRTVLISGCSSGIGLELAVQLAHDPKKRYQVVA
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 RNEDKLLQAKKEIEMHSIND-KQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVNCA
.: : :. .: . . :.. ..:: .: :.: . . : ::.::: :
CCDS12 TMRD--LGKKETLEAAAGEALGQTLTVAQLDVCSD----ESVAQCLSCIQGEVDVLVNNA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 GMAVSGKFEDLEVSTFERLMSINYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFG
::.. : .: : ..... ... :..:.: .::. ::.:: :.:: .:: : :..
CCDS12 GMGLVGPLEGLSLAAMQNVFDTNFFGAVRLVKAVLPGMKRRRQGHIVVISSVMGLQGVIF
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB3 FTAYSASKFAIRGLAEALQMEVKPYNVYITVAYPPDTDTPGFAEENRTKPLETRLISETT
.:.:::::..:. :.: ... .:..:... :
CCDS12 NDVYAASKFALEGFFESLAIQLLQFNIFISLVEPGPVVTEFEGKLLAQVSMAEFPGTDPE
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB3 SVCKPEQVAKQIVKDAIQGNFNSSLGSDGYMLSALTCGMAPVTSITEGLQQVVTMGLFRT
CCDS12 TLHYFRDLYLPASRKLFCSVGQNPQDVVQAIVNVISSTRPPLRRQTNIRYSPLTTLKTVD
240 250 260 270 280 290
>>CCDS6167.1 SDR16C5 gene_id:195814|Hs108|chr8 (309 aa)
initn: 214 init1: 148 opt: 277 Z-score: 349.7 bits: 72.9 E(32554): 3.7e-13
Smith-Waterman score: 277; 29.2% identity (60.8% similar) in 209 aa overlap (12-216:20-223)
10 20 30 40 50
pF1KB3 MLLLAAAFLVAFVLLLYMVSPLISPKPLA-LPGAHVVVTGGSSGIGKCIAIE
: :: :. :. ::: . : :..::..::.:. .:..
CCDS61 MSFNLQSSKKLFIFLGKSLFSLLEAMIFALL-PKPRKNVAGEIVLITGAGSGLGRLLALQ
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 CYKQGAFITLVARNEDKLLQAKKEIEMHSINDKQVVLCISVDVSQDYNQVENVIKQAQEK
. :. ..: :.. .. : . . . .. : : :: . : : :....
CCDS61 FARLGSVLVLWDINKEGNEETCKMAREAGATRVHAYTC---DCSQK-EGVYRVADQVKKE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 LGPVDMLVNCAGMAVSGKFEDLEVSTFERLMSINYLGSVYPSRAVITTMKERRVGRIVFV
.: :..:.: ::.... :: : .:. ...:. . .. .: . .: :..: .
CCDS61 VGDVSILINNAGIVTGKKFLDCPDELMEKSFDVNFKAHLWTYKAFLPAMIANDHGHLVCI
120 130 140 150 160 170
180 190 200 210 220
pF1KB3 SSQAGQLGLFGFTAYSASKFAIRGLAEALQMEV---KPYNVYITVAYPPDTDTPGFAEEN
::.:: :. :.. : ::::: :.::.. .:. : .. :.. :
CCDS61 SSSAGLSGVNGLADYCASKFAAFGFAESVFVETFVQKQKGIKTTIVCPFFIKTGMFEGCT
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB3 RTKPLETRLISETTSVCKPEQVAKQIVKDAIQGNFNSSLGSDGYMLSALTCGMAPVTSIT
CCDS61 TGCPSLLPILEPKYAVEKIVEAILQEKMYLYMPKLLYFMMFLKSFLPLKTGLLIADYLGI
240 250 260 270 280 290
>>CCDS83296.1 SDR16C5 gene_id:195814|Hs108|chr8 (318 aa)
initn: 214 init1: 148 opt: 277 Z-score: 349.5 bits: 72.9 E(32554): 3.8e-13
Smith-Waterman score: 277; 29.2% identity (60.8% similar) in 209 aa overlap (12-216:20-223)
10 20 30 40 50
pF1KB3 MLLLAAAFLVAFVLLLYMVSPLISPKPLA-LPGAHVVVTGGSSGIGKCIAIE
: :: :. :. ::: . : :..::..::.:. .:..
CCDS83 MSFNLQSSKKLFIFLGKSLFSLLEAMIFALL-PKPRKNVAGEIVLITGAGSGLGRLLALQ
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 CYKQGAFITLVARNEDKLLQAKKEIEMHSINDKQVVLCISVDVSQDYNQVENVIKQAQEK
. :. ..: :.. .. : . . . .. : : :: . : : :....
CCDS83 FARLGSVLVLWDINKEGNEETCKMAREAGATRVHAYTC---DCSQK-EGVYRVADQVKKE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 LGPVDMLVNCAGMAVSGKFEDLEVSTFERLMSINYLGSVYPSRAVITTMKERRVGRIVFV
.: :..:.: ::.... :: : .:. ...:. . .. .: . .: :..: .
CCDS83 VGDVSILINNAGIVTGKKFLDCPDELMEKSFDVNFKAHLWTYKAFLPAMIANDHGHLVCI
120 130 140 150 160 170
180 190 200 210 220
pF1KB3 SSQAGQLGLFGFTAYSASKFAIRGLAEALQMEV---KPYNVYITVAYPPDTDTPGFAEEN
::.:: :. :.. : ::::: :.::.. .:. : .. :.. :
CCDS83 SSSAGLSGVNGLADYCASKFAAFGFAESVFVETFVQKQKGIKTTIVCPFFIKTGMFEGCT
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB3 RTKPLETRLISETTSVCKPEQVAKQIVKDAIQGNFNSSLGSDGYMLSALTCGMAPVTSIT
CCDS83 TGCPSLLPILEPKYAVEKIVEAILQEKMYLYMPKLLYFMMFLKRLHLAQDGSECLTEAMW
240 250 260 270 280 290
332 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:11:20 2016 done: Sat Nov 5 05:11:21 2016
Total Scan time: 2.290 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]