Result of FASTA (ccds) for
pF1KB3487
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3487, 664 aa
1>>>pF1KB3487 664 - 664 aa - 664 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9244+/-0.000937; mu= 15.7298+/- 0.056
mean_var=67.7163+/-13.658, 0's: 0 Z-trim(104.6): 28 B-trim: 4 in 1/49
Lambda= 0.155857
statistics sampled from 7971 (7979) to 7971 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.617), E-opt: 0.2 (0.245), width: 16
Scan time: 3.660
The best scores are: opt bits E(32554)
CCDS3853.1 SDHA gene_id:6389|Hs108|chr5 ( 664) 4485 1017.9 0
CCDS82985.1 SDHA gene_id:6389|Hs108|chr5 ( 583) 3501 796.6 0
CCDS77992.1 SDHA gene_id:6389|Hs108|chr5 ( 616) 3474 790.6 0
>>CCDS3853.1 SDHA gene_id:6389|Hs108|chr5 (664 aa)
initn: 4485 init1: 4485 opt: 4485 Z-score: 5445.3 bits: 1017.9 E(32554): 0
Smith-Waterman score: 4485; 99.8% identity (100.0% similar) in 664 aa overlap (1-664:1-664)
10 20 30 40 50 60
pF1KB3 MSGVRGLSRLLSARRLALAKAWPTVLQTGTRGFHFTVDGNKRASAKVSDSISAQYPVVDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MSGVRGLSRLLSARRLALAKAWPTVLQTGTRGFHFTVDGNKRASAKVSDSISAQYPVVDH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 WHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 WHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 GKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 GKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 DGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 DGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTGI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 YGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 YGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 KDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 KDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 VLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIEESCRPGDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 VLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIEESCRPGDK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 VPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQKSMQNHAAVFRVGSVLQEGCGKIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 VPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQKSMQNHAAVFRVGSVLQEGCGKIS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 KLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 KLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 IDEYDYSKPIQGQQKKPFEEHWRKHTLSFVDVGTGKVTLEYRPVIDKTLNEADCATVPPA
::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
CCDS38 IDEYDYSKPIQGQQKKPFEEHWRKHTLSYVDVGTGKVTLEYRPVIDKTLNEADCATVPPA
610 620 630 640 650 660
pF1KB3 IRSY
::::
CCDS38 IRSY
>>CCDS82985.1 SDHA gene_id:6389|Hs108|chr5 (583 aa)
initn: 3501 init1: 3501 opt: 3501 Z-score: 4250.5 bits: 796.6 E(32554): 0
Smith-Waterman score: 3777; 87.7% identity (87.8% similar) in 664 aa overlap (1-664:1-583)
10 20 30 40 50 60
pF1KB3 MSGVRGLSRLLSARRLALAKAWPTVLQTGTRGFHFTVDGNKRASAKVSDSISAQYPVVDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MSGVRGLSRLLSARRLALAKAWPTVLQTGTRGFHFTVDGNKRASAKVSDSISAQYPVVDH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 WHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 WHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 GKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 DGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTGI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 YGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 YGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 KDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 VLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIEESCRPGDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIEESCRPGDK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 VPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQKSMQNHAAVFRVGSVLQEGCGKIS
:::::::::::::::::::::::::::::::::::::
CCDS82 VPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQK-----------------------
490 500 510
550 560 570 580 590 600
pF1KB3 KLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVR
::
CCDS82 ----------------------------------------------------------VR
610 620 630 640 650 660
pF1KB3 IDEYDYSKPIQGQQKKPFEEHWRKHTLSFVDVGTGKVTLEYRPVIDKTLNEADCATVPPA
::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
CCDS82 IDEYDYSKPIQGQQKKPFEEHWRKHTLSYVDVGTGKVTLEYRPVIDKTLNEADCATVPPA
520 530 540 550 560 570
pF1KB3 IRSY
::::
CCDS82 IRSY
580
>>CCDS77992.1 SDHA gene_id:6389|Hs108|chr5 (616 aa)
initn: 3474 init1: 3474 opt: 3474 Z-score: 4217.3 bits: 790.6 E(32554): 0
Smith-Waterman score: 4034; 92.6% identity (92.8% similar) in 664 aa overlap (1-664:1-616)
10 20 30 40 50 60
pF1KB3 MSGVRGLSRLLSARRLALAKAWPTVLQTGTRGFHFTVDGNKRASAKVSDSISAQYPVVDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MSGVRGLSRLLSARRLALAKAWPTVLQTGTRGFHFTVDGNKRASAKVSDSISAQYPVVDH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR
::::::::::::::::::::::::::::::::::::::::::::
CCDS77 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQ----------------
70 80 90 100
130 140 150 160 170 180
pF1KB3 WHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKF
::::::::::::::::::::::::::::
CCDS77 --------------------------------LENYGMPFSRTEDGKIYQRAFGGQSLKF
110 120 130
190 200 210 220 230 240
pF1KB3 GKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 GKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIE
140 150 160 170 180 190
250 260 270 280 290 300
pF1KB3 DGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTGI
200 210 220 230 240 250
310 320 330 340 350 360
pF1KB3 YGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 YGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPE
260 270 280 290 300 310
370 380 390 400 410 420
pF1KB3 KDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 KDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQ
320 330 340 350 360 370
430 440 450 460 470 480
pF1KB3 VLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIEESCRPGDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIEESCRPGDK
380 390 400 410 420 430
490 500 510 520 530 540
pF1KB3 VPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQKSMQNHAAVFRVGSVLQEGCGKIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQKSMQNHAAVFRVGSVLQEGCGKIS
440 450 460 470 480 490
550 560 570 580 590 600
pF1KB3 KLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 KLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVR
500 510 520 530 540 550
610 620 630 640 650 660
pF1KB3 IDEYDYSKPIQGQQKKPFEEHWRKHTLSFVDVGTGKVTLEYRPVIDKTLNEADCATVPPA
::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
CCDS77 IDEYDYSKPIQGQQKKPFEEHWRKHTLSYVDVGTGKVTLEYRPVIDKTLNEADCATVPPA
560 570 580 590 600 610
pF1KB3 IRSY
::::
CCDS77 IRSY
664 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 07:06:54 2016 done: Sat Nov 5 07:06:55 2016
Total Scan time: 3.660 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]