FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB3483, 253 aa 1>>>pF1KB3483 253 - 253 aa - 253 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.6048+/-0.00108; mu= 6.3448+/- 0.065 mean_var=224.9707+/-46.208, 0's: 0 Z-trim(111.8): 53 B-trim: 114 in 1/49 Lambda= 0.085509 statistics sampled from 12593 (12639) to 12593 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.388), width: 16 Scan time: 2.070 The best scores are: opt bits E(32554) CCDS13080.1 PRNP gene_id:5621|Hs108|chr20 ( 253) 1854 240.9 6.3e-64 >>CCDS13080.1 PRNP gene_id:5621|Hs108|chr20 (253 aa) initn: 1854 init1: 1854 opt: 1854 Z-score: 1261.2 bits: 240.9 E(32554): 6.3e-64 Smith-Waterman score: 1854; 100.0% identity (100.0% similar) in 253 aa overlap (1-253:1-253) 10 20 30 40 50 60 pF1KB3 MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 HGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 HGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB3 VVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 VVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB3 NITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSSMVLFSSPPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 NITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSSMVLFSSPPV 190 200 210 220 230 240 250 pF1KB3 ILLISFLIFLIVG ::::::::::::: CCDS13 ILLISFLIFLIVG 250 253 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 02:30:49 2016 done: Fri Nov 4 02:30:50 2016 Total Scan time: 2.070 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]