FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3481, 782 aa
  1>>>pF1KB3481 782 - 782 aa - 782 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3961+/-0.000988; mu= 15.3568+/- 0.060
 mean_var=86.1899+/-17.283, 0's: 0 Z-trim(106.1): 16  B-trim: 118 in 1/50
 Lambda= 0.138148
 statistics sampled from 8810 (8815) to 8810 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.615), E-opt: 0.2 (0.271), width:  16
 Scan time:  4.000

The best scores are:                                      opt bits E(32554)
CCDS2144.1 ERCC3 gene_id:2071|Hs108|chr2           ( 782) 5187 1044.2       0


>>CCDS2144.1 ERCC3 gene_id:2071|Hs108|chr2                (782 aa)
 initn: 5187 init1: 5187 opt: 5187  Z-score: 5584.9  bits: 1044.2 E(32554):    0
Smith-Waterman score: 5187; 100.0% identity (100.0% similar) in 782 aa overlap (1-782:1-782)

               10        20        30        40        50        60
pF1KB3 MGKRDRADRDKKKSRKRHYEDEEDDEEDAPGNDPQEAVPSAAGKQVDESGTKVDEYGAKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MGKRDRADRDKKKSRKRHYEDEEDDEEDAPGNDPQEAVPSAAGKQVDESGTKVDEYGAKD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 YRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 YRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 YSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 YSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 HPDVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAISKTAESSGGPSTSRVTDPQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 HPDVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAISKTAESSGGPSTSRVTDPQG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 KSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYDFRND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 KSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYDFRND
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 SVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 SVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 CLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 CLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 WEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 WEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 NFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 NFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 FRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 FRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFY
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLAFSTKEEQQQLLQKVLAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLAFSTKEEQQQLLQKVLAAT
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 DLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 DLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRF
              730       740       750       760       770       780

         
pF1KB3 RK
       ::
CCDS21 RK
         




782 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 13:23:30 2016 done: Thu Nov  3 13:23:31 2016
 Total Scan time:  4.000 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]