Result of FASTA (ccds) for
pF1KB3479
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3479, 421 aa
1>>>pF1KB3479 421 - 421 aa - 421 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8232+/-0.000955; mu= 10.8947+/- 0.057
mean_var=123.2726+/-24.723, 0's: 0 Z-trim(109.1): 113 B-trim: 0 in 0/51
Lambda= 0.115516
statistics sampled from 10510 (10630) to 10510 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.327), width: 16
Scan time: 2.340
The best scores are: opt bits E(32554)
CCDS5763.1 TES gene_id:26136|Hs108|chr7 ( 421) 3035 517.0 1.4e-146
CCDS5764.1 TES gene_id:26136|Hs108|chr7 ( 412) 2979 507.7 8.6e-144
CCDS33688.1 LMCD1 gene_id:29995|Hs108|chr3 ( 365) 1328 232.5 5.2e-61
CCDS63534.1 LMCD1 gene_id:29995|Hs108|chr3 ( 292) 1073 189.9 2.7e-48
CCDS63533.1 LMCD1 gene_id:29995|Hs108|chr3 ( 253) 868 155.7 4.7e-38
CCDS63532.1 LMCD1 gene_id:29995|Hs108|chr3 ( 247) 826 148.7 5.9e-36
CCDS2902.1 PRICKLE2 gene_id:166336|Hs108|chr3 ( 844) 727 132.6 1.4e-30
CCDS78481.1 PRICKLE3 gene_id:4007|Hs108|chrX ( 547) 717 130.8 3.2e-30
CCDS14320.1 PRICKLE3 gene_id:4007|Hs108|chrX ( 615) 717 130.8 3.5e-30
CCDS8742.1 PRICKLE1 gene_id:144165|Hs108|chr12 ( 831) 701 128.2 2.9e-29
CCDS34449.1 PRICKLE4 gene_id:29964|Hs108|chr6 ( 384) 448 85.8 7.7e-17
CCDS30678.1 FHL3 gene_id:2275|Hs108|chr1 ( 280) 330 66.1 5e-11
CCDS41544.1 LDB3 gene_id:11155|Hs108|chr10 ( 617) 333 66.8 6.5e-11
>>CCDS5763.1 TES gene_id:26136|Hs108|chr7 (421 aa)
initn: 3035 init1: 3035 opt: 3035 Z-score: 2745.3 bits: 517.0 E(32554): 1.4e-146
Smith-Waterman score: 3035; 100.0% identity (100.0% similar) in 421 aa overlap (1-421:1-421)
10 20 30 40 50 60
pF1KB3 MDLENKVKKMGLGHEQGFGAPCLKCKEKCEGFELHFWRKICRNCKCGQEEHDVLLSNEED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 MDLENKVKKMGLGHEQGFGAPCLKCKEKCEGFELHFWRKICRNCKCGQEEHDVLLSNEED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 RKVGKLFEDTKYTTLIAKLKSDGIPMYKRNVMILTNPVAAKKNVSINTVTYEWAPPVQNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 RKVGKLFEDTKYTTLIAKLKSDGIPMYKRNVMILTNPVAAKKNVSINTVTYEWAPPVQNQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 ALARQYMQMLPKEKQPVAGSEGAQYRKKQLAKQLPAHDQDPSKCHELSPREVKEMEQFVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 ALARQYMQMLPKEKQPVAGSEGAQYRKKQLAKQLPAHDQDPSKCHELSPREVKEMEQFVK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 KYKSEALGVGDVKLPCEMDAQGPKQMNIPGGDRSTPAAVGAMEDKSAEHKRTQYSCYCCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 KYKSEALGVGDVKLPCEMDAQGPKQMNIPGGDRSTPAAVGAMEDKSAEHKRTQYSCYCCK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 LSMKEGDPAIYAERAGYDKLWHPACFVCSTCHELLVDMIYFWKNEKLYCGRHYCDSEKPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 LSMKEGDPAIYAERAGYDKLWHPACFVCSTCHELLVDMIYFWKNEKLYCGRHYCDSEKPR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 CAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 CAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM
370 380 390 400 410 420
pF1KB3 S
:
CCDS57 S
>>CCDS5764.1 TES gene_id:26136|Hs108|chr7 (412 aa)
initn: 2979 init1: 2979 opt: 2979 Z-score: 2695.0 bits: 507.7 E(32554): 8.6e-144
Smith-Waterman score: 2979; 100.0% identity (100.0% similar) in 412 aa overlap (10-421:1-412)
10 20 30 40 50 60
pF1KB3 MDLENKVKKMGLGHEQGFGAPCLKCKEKCEGFELHFWRKICRNCKCGQEEHDVLLSNEED
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 MGLGHEQGFGAPCLKCKEKCEGFELHFWRKICRNCKCGQEEHDVLLSNEED
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 RKVGKLFEDTKYTTLIAKLKSDGIPMYKRNVMILTNPVAAKKNVSINTVTYEWAPPVQNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 RKVGKLFEDTKYTTLIAKLKSDGIPMYKRNVMILTNPVAAKKNVSINTVTYEWAPPVQNQ
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 ALARQYMQMLPKEKQPVAGSEGAQYRKKQLAKQLPAHDQDPSKCHELSPREVKEMEQFVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 ALARQYMQMLPKEKQPVAGSEGAQYRKKQLAKQLPAHDQDPSKCHELSPREVKEMEQFVK
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB3 KYKSEALGVGDVKLPCEMDAQGPKQMNIPGGDRSTPAAVGAMEDKSAEHKRTQYSCYCCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 KYKSEALGVGDVKLPCEMDAQGPKQMNIPGGDRSTPAAVGAMEDKSAEHKRTQYSCYCCK
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB3 LSMKEGDPAIYAERAGYDKLWHPACFVCSTCHELLVDMIYFWKNEKLYCGRHYCDSEKPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 LSMKEGDPAIYAERAGYDKLWHPACFVCSTCHELLVDMIYFWKNEKLYCGRHYCDSEKPR
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB3 CAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 CAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVV
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB3 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM
360 370 380 390 400 410
pF1KB3 S
:
CCDS57 S
>>CCDS33688.1 LMCD1 gene_id:29995|Hs108|chr3 (365 aa)
initn: 1332 init1: 995 opt: 1328 Z-score: 1208.7 bits: 232.5 E(32554): 5.2e-61
Smith-Waterman score: 1328; 51.1% identity (77.2% similar) in 356 aa overlap (2-352:7-359)
10 20 30 40 50
pF1KB3 MDLENKVKKMGLGHEQGF-GAPCLKCKEKCEGFELHFWRKICRNCKCGQEEHDVL
::. ::::.::. :. :. :: :: : ::: : :::::..:::.::.: .
CCDS33 MAKVAKDLNPGVKKMSLGQLQSARGVACLGCKGTCSGFEPHSWRKICKSCKCSQEDHCLT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 LSNEEDRKVGKLFEDTKYTTLIAKLKS-DGIPMYKRNVMILTNPVAAKKNVSINTVTYEW
. :.:::.:.:. :.::.:: :..:. ::: .:::: ::.:::.:. :. ...:.::::
CCDS33 SDLEDDRKIGRLLMDSKYSTLTARVKGGDGIRIYKRNRMIMTNPIATGKDPTFDTITYEW
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB3 APPVQNQALARQYMQMLPKEKQPVAGSEGAQYRKKQLAKQLPAHDQDPSKCHELSPREVK
::: .: :. :::...:::::::.:.::: ::..:: .::: .:::::.:. : :.:
CCDS33 APPGVTQKLGLQYMELIPKEKQPVTGTEGAFYRRRQLMHQLPIYDQDPSRCRGLLENELK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB3 EMEQFVKKYKSEALGVGDVKLPCE--MDAQGPKQMNIPGGDRSTPAAV-GAMEDKSAEHK
::.:::.:::::::::.: :: . . . ::.. : : ..: :.. :.. : : :
CCDS33 LMEEFVKQYKSEALGVGEVALPGQGGLPKEEGKQQEKPEGAETTAATTNGSLSDPS---K
190 200 210 220 230
240 250 260 270 280 290
pF1KB3 RTQYSCYCCKLSMKEGDPAIYAERAGYDKLWHPACFVCSTCHELLVDMIYFWKNEKLYCG
...: : :: . .:..:..::::.: :::.::::. : : :::.:::::. .::
CCDS33 EVEYVCELCKGAAPPDSPVVYSDRAGYNKQWHPTCFVCAKCSEPLVDLIYFWKDGAPWCG
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB3 RHYCDSEKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCK
::::.: .:::.::::.::...: ..:. :: ::: : :...:.:. :.... . .:
CCDS33 RHYCESLRPRCSGCDEIIFAEDYQRVEDLAWHRKHFVCEGCEQLLSGRAYIVTKGQLLCP
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB3 PCYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMV
:
CCDS33 TCSKSKRS
360
>>CCDS63534.1 LMCD1 gene_id:29995|Hs108|chr3 (292 aa)
initn: 995 init1: 995 opt: 1073 Z-score: 980.4 bits: 189.9 E(32554): 2.7e-48
Smith-Waterman score: 1073; 50.7% identity (77.8% similar) in 288 aa overlap (69-352:2-286)
40 50 60 70 80 90
pF1KB3 KICRNCKCGQEEHDVLLSNEEDRKVGKLFEDTKYTTLIAKLKS-DGIPMYKRNVMILTNP
:.::.:: :..:. ::: .:::: ::.:::
CCDS63 MDSKYSTLTARVKGGDGIRIYKRNRMIMTNP
10 20 30
100 110 120 130 140 150
pF1KB3 VAAKKNVSINTVTYEWAPPVQNQALARQYMQMLPKEKQPVAGSEGAQYRKKQLAKQLPAH
.:. :. ...:.::::::: .: :. :::...:::::::.:.::: ::..:: .::: .
CCDS63 IATGKDPTFDTITYEWAPPGVTQKLGLQYMELIPKEKQPVTGTEGAFYRRRQLMHQLPIY
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB3 DQDPSKCHELSPREVKEMEQFVKKYKSEALGVGDVKLPCE--MDAQGPKQMNIPGGDRST
:::::.:. : :.: ::.:::.:::::::::.: :: . . . ::.. : : ..:
CCDS63 DQDPSRCRGLLENELKLMEEFVKQYKSEALGVGEVALPGQGGLPKEEGKQQEKPEGAETT
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB3 PAAV-GAMEDKSAEHKRTQYSCYCCKLSMKEGDPAIYAERAGYDKLWHPACFVCSTCHEL
:.. :.. : : :...: : :: . .:..:..::::.: :::.::::. : :
CCDS63 AATTNGSLSDPS---KEVEYVCELCKGAAPPDSPVVYSDRAGYNKQWHPTCFVCAKCSEP
160 170 180 190 200
280 290 300 310 320 330
pF1KB3 LVDMIYFWKNEKLYCGRHYCDSEKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSI
:::.:::::. .::::::.: .:::.::::.::...: ..:. :: ::: : :...
CCDS63 LVDLIYFWKDGAPWCGRHYCESLRPRCSGCDEIIFAEDYQRVEDLAWHRKHFVCEGCEQL
210 220 230 240 250 260
340 350 360 370 380 390
pF1KB3 LAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCC
:.:. :.... . .: :
CCDS63 LSGRAYIVTKGQLLCPTCSKSKRS
270 280 290
>>CCDS63533.1 LMCD1 gene_id:29995|Hs108|chr3 (253 aa)
initn: 828 init1: 828 opt: 868 Z-score: 796.7 bits: 155.7 E(32554): 4.7e-38
Smith-Waterman score: 868; 49.8% identity (76.6% similar) in 231 aa overlap (125-352:20-247)
100 110 120 130 140 150
pF1KB3 TNPVAAKKNVSINTVTYEWAPPVQNQALARQYMQMLPKEKQPVAGSEGAQYRKKQLAKQL
:::...:::::::.:.::: ::..:: .::
CCDS63 MFGMQGDVFGLRATFMEGLQYMELIPKEKQPVTGTEGAFYRRRQLMHQL
10 20 30 40
160 170 180 190 200 210
pF1KB3 PAHDQDPSKCHELSPREVKEMEQFVKKYKSEALGVGDVKLPCE--MDAQGPKQMNIPGGD
: .:::::.:. : :.: ::.:::.:::::::::.: :: . . . ::.. : :
CCDS63 PIYDQDPSRCRGLLENELKLMEEFVKQYKSEALGVGEVALPGQGGLPKEEGKQQEKPEGA
50 60 70 80 90 100
220 230 240 250 260 270
pF1KB3 RSTPAAV-GAMEDKSAEHKRTQYSCYCCKLSMKEGDPAIYAERAGYDKLWHPACFVCSTC
..: :.. :.. : : :...: : :: . .:..:..::::.: :::.::::. :
CCDS63 ETTAATTNGSLSDPS---KEVEYVCELCKGAAPPDSPVVYSDRAGYNKQWHPTCFVCAKC
110 120 130 140 150 160
280 290 300 310 320 330
pF1KB3 HELLVDMIYFWKNEKLYCGRHYCDSEKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDC
: :::.:::::. .::::::.: .:::.::::.::...: ..:. :: ::: : :
CCDS63 SEPLVDLIYFWKDGAPWCGRHYCESLRPRCSGCDEIIFAEDYQRVEDLAWHRKHFVCEGC
170 180 190 200 210 220
340 350 360 370 380 390
pF1KB3 DSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLC
...:.:. :.... . .: :
CCDS63 EQLLSGRAYIVTKGQLLCPTCSKSKRS
230 240 250
>>CCDS63532.1 LMCD1 gene_id:29995|Hs108|chr3 (247 aa)
initn: 785 init1: 500 opt: 826 Z-score: 759.0 bits: 148.7 E(32554): 5.9e-36
Smith-Waterman score: 826; 53.4% identity (78.0% similar) in 232 aa overlap (2-228:7-238)
10 20 30 40 50
pF1KB3 MDLENKVKKMGLGHEQGF-GAPCLKCKEKCEGFELHFWRKICRNCKCGQEEHDVL
::. ::::.::. :. :. :: :: : ::: : :::::..:::.::.: .
CCDS63 MAKVAKDLNPGVKKMSLGQLQSARGVACLGCKGTCSGFEPHSWRKICKSCKCSQEDHCLT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 LSNEEDRKVGKLFEDTKYTTLIAKLKS-DGIPMYKRNVMILTNPVAAKKNVSINTVTYEW
. :.:::.:.:. :.::.:: :..:. ::: .:::: ::.:::.:. :. ...:.::::
CCDS63 SDLEDDRKIGRLLMDSKYSTLTARVKGGDGIRIYKRNRMIMTNPIATGKDPTFDTITYEW
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB3 APPVQNQALARQYMQMLPKEKQPVAGSEGAQYRKKQLAKQLPAHDQDPSKCHELSPREVK
::: .: :. :::...:::::::.:.::: ::..:: .::: .:::::.:. : :.:
CCDS63 APPGVTQKLGLQYMELIPKEKQPVTGTEGAFYRRRQLMHQLPIYDQDPSRCRGLLENELK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB3 EMEQFVKKYKSEALGVGDVKLPCE--MDAQGPKQMNIPGGDRSTPAAV-GAMEDKSAEHK
::.:::.:::::::::.: :: . . . ::.. : : ..: :.. :.. : : :
CCDS63 LMEEFVKQYKSEALGVGEVALPGQGGLPKEEGKQQEKPEGAETTAATTNGSLSDPSKEVE
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB3 RTQYSCYCCKLSMKEGDPAIYAERAGYDKLWHPACFVCSTCHELLVDMIYFWKNEKLYCG
CCDS63 YKPVPLV
>>CCDS2902.1 PRICKLE2 gene_id:166336|Hs108|chr3 (844 aa)
initn: 967 init1: 711 opt: 727 Z-score: 662.3 bits: 132.6 E(32554): 1.4e-30
Smith-Waterman score: 880; 39.4% identity (65.1% similar) in 307 aa overlap (111-416:37-310)
90 100 110 120 130 140
pF1KB3 SDGIPMYKRNVMILTNPVAAKKNVSINTVTYEWAPPVQNQALARQYMQMLPKEKQPVAGS
: :.:: . ..::.. ::.:: : ..:
CCDS29 LEMEKTISKLMFDFQRNSTSDDDSGCALEEYAWVPPGLKPEQVHQYYSCLPEEKVPYVNS
10 20 30 40 50 60
150 160 170 180 190
pF1KB3 EGAQYRKKQLAKQLPAHDQDPSKCHELSPREVKEMEQFVKKYKSEALGVGDVK-LPCEMD
: . : ::: .::: ::.. :. :. .: .:.. : .. : : :: :.:. .: :
CCDS29 PGEKLRIKQLLHQLPPHDNEVRYCNSLDEEEKRELKLFSSQRKRENLGRGNVRPFPVTM-
70 80 90 100 110 120
200 210 220 230 240 250
pF1KB3 AQGPKQMNIPGGDRSTPAAVGAMEDKSAEHKRTQYSCYCCKLSMKEGDPAIYAERAGYDK
.::. : : ... :: :..: :::.
CCDS29 -------------------TGAI-------------CEQCGGQINGGDIAVFASRAGHGV
130 140 150
260 270 280 290 300 310
pF1KB3 LWHPACFVCSTCHELLVDMIYFWKNEKLYCGRHYCDSEKPRCAGCDELIFSNEYTQAENQ
::: ::::..:.:::::.:::... :.:::::. . :::::.:::.::..: :.::..
CCDS29 CWHPPCFVCTVCNELLVDLIYFYQDGKIYCGRHHAECLKPRCAACDEIIFADECTEAEGR
160 170 180 190 200 210
320 330 340 350 360 370
pF1KB3 NWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYNN
.::.::::::.:...:.:. :.: . .: : :. . .: :. : . : . ..::..
CCDS29 HWHMKHFCCFECETVLGGQRYIMKEGRPYCCHCFESLYAEYCDTCAQHIGIDQGQMTYDG
220 230 240 250 260 270
380 390 400 410 420
pF1KB3 FSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRMS
:::. :: :. :.: :.:. :.: .:..::: :
CCDS29 QHWHATETCFCCAHCKKSLLGRPFLPKQGQIFCSRACSAGEDPNGSDSSDSAFQNARAKE
280 290 300 310 320 330
CCDS29 SRRSAKIGKNKGKTEEPMLNQHSQLQVSSNRLSADVDPLSLQMDMLSLSSQTPSLNRDPI
340 350 360 370 380 390
>>CCDS78481.1 PRICKLE3 gene_id:4007|Hs108|chrX (547 aa)
initn: 999 init1: 704 opt: 717 Z-score: 656.0 bits: 130.8 E(32554): 3.2e-30
Smith-Waterman score: 868; 40.1% identity (63.2% similar) in 307 aa overlap (111-416:25-298)
90 100 110 120 130 140
pF1KB3 SDGIPMYKRNVMILTNPVAAKKNVSINTVTYEWAPPVQNQALARQYMQMLPKEKQPVAGS
: :.:: . . :... ::..: : ..:
CCDS78 MCRLISDFQRHSISDDDSGCASEEYAWVPPGLKPEQVYQFFSCLPEDKVPYVNS
10 20 30 40 50
150 160 170 180 190 200
pF1KB3 EGAQYRKKQLAKQLPAHDQDPSKCHELSPREVKEMEQFVKKYKSEALGVGDVKLPCEMDA
: .:: ::: .::: ::.. . : : .: ::.. : .. : : :: : :..
CCDS78 PGEKYRIKQLLHQLPPHDSEAQYCTALEEEEKKELRAFSQQRKRENLGRGIVRI------
60 70 80 90 100
210 220 230 240 250
pF1KB3 QGPKQMNIPGGDRSTPAAV-GAMEDKSAEHKRTQYSCYCCKLSMKEGDPAIYAERAGYDK
:... ::. : : .. :: :..: :::
CCDS78 --------------FPVTITGAI-------------CEECGKQIGGGDIAVFASRAGLGA
110 120 130 140
260 270 280 290 300 310
pF1KB3 LWHPACFVCSTCHELLVDMIYFWKNEKLYCGRHYCDSEKPRCAGCDELIFSNEYTQAENQ
::: ::::.::.:::::.:::.. :.:::::. . .::: .:::.::: : :.::..
CCDS78 CWHPQCFVCTTCQELLVDLIYFYHVGKVYCGRHHAECLRPRCQACDEIIFSPECTEAEGR
150 160 170 180 190 200
320 330 340 350 360 370
pF1KB3 NWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYNN
.::. :::::.:.. :.:. ::: ...: : :: :: :.:: . : . ...:..
CCDS78 HWHMDHFCCFECEASLGGQRYVMRQSRPHCCACYEARHAEYCDGCGEHIGLDQGQMAYEG
210 220 230 240 250 260
380 390 400 410 420
pF1KB3 FSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRMS
:::: .:: :: :.. :.:. :.: .:..::: :
CCDS78 QHWHASDRCFCCSRCGRALLGRPFLPRRGLIFCSRACSLGSEPTAPGPSRRSWSAGPVTA
270 280 290 300 310 320
CCDS78 PLAASTASFSAVKGASETTTKGTSTELAPATGPEEPSRFLRGAPHRHSMPELGLRSVPEP
330 340 350 360 370 380
>>CCDS14320.1 PRICKLE3 gene_id:4007|Hs108|chrX (615 aa)
initn: 1135 init1: 704 opt: 717 Z-score: 655.2 bits: 130.8 E(32554): 3.5e-30
Smith-Waterman score: 1002; 37.8% identity (60.4% similar) in 399 aa overlap (19-416:24-366)
10 20 30 40 50
pF1KB3 MDLENKVKKMGLGHEQGFGAPCLKCKEKCEGFELHFWRKICRNCKCGQEEHDVLL
: :: .:.:.: :: :: :::::..::: .::: :
CCDS14 MFARGSRRRRSGRAPPEAEDPDRGQPCNSCREQCPGFLLHGWRKICQHCKCPREEHAV--
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 SNEEDRKVGKLFEDTKYTTLIAKLKSDGIPMYKRNVMILTNPVAAKKNVSINTVTYEWAP
. : .: .. .: :: ..:. . . . . . : :.:
CCDS14 -----HAVPVDLE-----RIMCRLISD----FQRHSI-------SDDDSGCASEEYAWVP
60 70 80 90
120 130 140 150 160 170
pF1KB3 PVQNQALARQYMQMLPKEKQPVAGSEGAQYRKKQLAKQLPAHDQDPSKCHELSPREVKEM
: . . :... ::..: : ..: : .:: ::: .::: ::.. . : : .: ::.
CCDS14 PGLKPEQVYQFFSCLPEDKVPYVNSPGEKYRIKQLLHQLPPHDSEAQYCTALEEEEKKEL
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB3 EQFVKKYKSEALGVGDVKLPCEMDAQGPKQMNIPGGDRSTPAAV-GAMEDKSAEHKRTQY
. : .. : : :: : :.. :... ::.
CCDS14 RAFSQQRKRENLGRGIVRI--------------------FPVTITGAI------------
160 170 180
240 250 260 270 280 290
pF1KB3 SCYCCKLSMKEGDPAIYAERAGYDKLWHPACFVCSTCHELLVDMIYFWKNEKLYCGRHYC
: : .. :: :..: ::: ::: ::::.::.:::::.:::.. :.:::::.
CCDS14 -CEECGKQIGGGDIAVFASRAGLGACWHPQCFVCTTCQELLVDLIYFYHVGKVYCGRHHA
190 200 210 220 230 240
300 310 320 330 340 350
pF1KB3 DSEKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYV
. .::: .:::.::: : :.::...::. :::::.:.. :.:. ::: ...: : ::
CCDS14 ECLRPRCQACDEIIFSPECTEAEGRHWHMDHFCCFECEASLGGQRYVMRQSRPHCCACYE
250 260 270 280 290 300
360 370 380 390 400 410
pF1KB3 KNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSV
:: :.:: . : . ...:.. :::: .:: :: :.. :.:. :.: .:..:::
CCDS14 ARHAEYCDGCGEHIGLDQGQMAYEGQHWHASDRCFCCSRCGRALLGRPFLPRRGLIFCSR
310 320 330 340 350 360
420
pF1KB3 ECKKRMS
:
CCDS14 ACSLGSEPTAPGPSRRSWSAGPVTAPLAASTASFSAVKGASETTTKGTSTELAPATGPEE
370 380 390 400 410 420
>>CCDS8742.1 PRICKLE1 gene_id:144165|Hs108|chr12 (831 aa)
initn: 955 init1: 647 opt: 701 Z-score: 639.0 bits: 128.2 E(32554): 2.9e-29
Smith-Waterman score: 849; 38.9% identity (63.4% similar) in 306 aa overlap (111-416:33-306)
90 100 110 120 130 140
pF1KB3 SDGIPMYKRNVMILTNPVAAKKNVSINTVTYEWAPPVQNQALARQYMQMLPKEKQPVAGS
: :.:: . :. ::.:: : ..:
CCDS87 LEMEPKMSKLAFGCQRSSTSDDDSGCALEEYAWVPPGLRPEQIQLYFACLPEEKVPYVNS
10 20 30 40 50 60
150 160 170 180 190 200
pF1KB3 EGAQYRKKQLAKQLPAHDQDPSKCHELSPREVKEMEQFVKKYKSEALGVGDVKLPCEMDA
: ..: ::: ::: ::.. :. :: .: ::.. : . :.:::: : .::
CCDS87 PGEKHRIKQLLYQLPPHDNEVRYCQSLSEEEKKELQVFSAQRKKEALGRGTIKLL-----
70 80 90 100 110
210 220 230 240 250 260
pF1KB3 QGPKQMNIPGGDRSTPAAVGAMEDKSAEHKRTQYSCYCCKLSMKEGDPAIYAERAGYDKL
.:.. :: : : :... :. :..: :::
CCDS87 -----------SRAVMHAV----------------CEQCGLKINGGEVAVFASRAGPGVC
120 130 140 150
270 280 290 300 310 320
pF1KB3 WHPACFVCSTCHELLVDMIYFWKNEKLYCGRHYCDSEKPRCAGCDELIFSNEYTQAENQN
:::.:::: ::.:::::.:::... :..::::. . ::::..:::.::..: :.::...
CCDS87 WHPSCFVCFTCNELLVDLIYFYQDGKIHCGRHHAELLKPRCSACDEIIFADECTEAEGRH
160 170 180 190 200 210
330 340 350 360 370 380
pF1KB3 WHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYNNF
::.:::::..:...:.:. :.: . .: : :. . .: :. : . : . ..::..
CCDS87 WHMKHFCCLECETVLGGQRYIMKDGRPFCCGCFESLYAEYCETCGEHIGVDHAQMTYDGQ
220 230 240 250 260 270
390 400 410 420
pF1KB3 SWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRMS
:::. :: :. :. :.: :.: .:...:: :
CCDS87 HWHATEACFSCAQCKASLLGCPFLPKQGQIYCSKTCSLGEDVHASDSSDSAFQSARSRDS
280 290 300 310 320 330
CCDS87 RRSVRMGKSSRSADQCRQSLLLSPALNYKFPGLSGNADDTLSRKLDDLSLSRQGTSFASE
340 350 360 370 380 390
421 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:08:54 2016 done: Sat Nov 5 05:08:55 2016
Total Scan time: 2.340 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]