Result of FASTA (ccds) for
pF1KB3474
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3474, 197 aa
1>>>pF1KB3474 197 - 197 aa - 197 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4092+/-0.00075; mu= 8.8312+/- 0.045
mean_var=95.6674+/-18.480, 0's: 0 Z-trim(110.8): 10 B-trim: 4 in 1/49
Lambda= 0.131127
statistics sampled from 11873 (11880) to 11873 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.365), width: 16
Scan time: 2.180
The best scores are: opt bits E(32554)
CCDS42450.1 MBP gene_id:4155|Hs108|chr18 ( 197) 1303 256.0 1.1e-68
CCDS12011.1 MBP gene_id:4155|Hs108|chr18 ( 186) 414 87.8 4.6e-18
CCDS32847.1 MBP gene_id:4155|Hs108|chr18 ( 197) 414 87.8 4.8e-18
CCDS42448.1 MBP gene_id:4155|Hs108|chr18 ( 160) 410 87.0 6.8e-18
CCDS42449.1 MBP gene_id:4155|Hs108|chr18 ( 171) 410 87.0 7.2e-18
>>CCDS42450.1 MBP gene_id:4155|Hs108|chr18 (197 aa)
initn: 1303 init1: 1303 opt: 1303 Z-score: 1346.4 bits: 256.0 E(32554): 1.1e-68
Smith-Waterman score: 1303; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197)
10 20 30 40 50 60
pF1KB3 MGNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MGNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFG
130 140 150 160 170 180
190
pF1KB3 GDRGAPKRGSGKVSSEE
:::::::::::::::::
CCDS42 GDRGAPKRGSGKVSSEE
190
>>CCDS12011.1 MBP gene_id:4155|Hs108|chr18 (186 aa)
initn: 414 init1: 414 opt: 414 Z-score: 437.9 bits: 87.8 E(32554): 4.6e-18
Smith-Waterman score: 414; 100.0% identity (100.0% similar) in 60 aa overlap (134-193:1-60)
110 120 130 140 150 160
pF1KB3 DNTFKDRPSESDELQTIQEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFL
::::::::::::::::::::::::::::::
CCDS12 MASQKRPSQRHGSKYLATASTMDHARHGFL
10 20 30
170 180 190
pF1KB3 PRHRDTGILDSIGRFFGGDRGAPKRGSGKVSSEE
::::::::::::::::::::::::::::::
CCDS12 PRHRDTGILDSIGRFFGGDRGAPKRGSGKVPWLKPGRSPLPSHARSQPGLCNMYKDSHHP
40 50 60 70 80 90
>>CCDS32847.1 MBP gene_id:4155|Hs108|chr18 (197 aa)
initn: 414 init1: 414 opt: 414 Z-score: 437.5 bits: 87.8 E(32554): 4.8e-18
Smith-Waterman score: 414; 100.0% identity (100.0% similar) in 60 aa overlap (134-193:1-60)
110 120 130 140 150 160
pF1KB3 DNTFKDRPSESDELQTIQEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFL
::::::::::::::::::::::::::::::
CCDS32 MASQKRPSQRHGSKYLATASTMDHARHGFL
10 20 30
170 180 190
pF1KB3 PRHRDTGILDSIGRFFGGDRGAPKRGSGKVSSEE
::::::::::::::::::::::::::::::
CCDS32 PRHRDTGILDSIGRFFGGDRGAPKRGSGKVPWLKPGRSPLPSHARSQPGLCNMYKDSHHP
40 50 60 70 80 90
>>CCDS42448.1 MBP gene_id:4155|Hs108|chr18 (160 aa)
initn: 426 init1: 410 opt: 410 Z-score: 434.8 bits: 87.0 E(32554): 6.8e-18
Smith-Waterman score: 410; 98.4% identity (98.4% similar) in 61 aa overlap (134-194:1-61)
110 120 130 140 150 160
pF1KB3 DNTFKDRPSESDELQTIQEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFL
::::::::::::::::::::::::::::::
CCDS42 MASQKRPSQRHGSKYLATASTMDHARHGFL
10 20 30
170 180 190
pF1KB3 PRHRDTGILDSIGRFFGGDRGAPKRGSGKVSSEE
::::::::::::::::::::::::::::: :
CCDS42 PRHRDTGILDSIGRFFGGDRGAPKRGSGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHF
40 50 60 70 80 90
CCDS42 FKNIVTPRTPPPSQGKGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRD
100 110 120 130 140 150
>>CCDS42449.1 MBP gene_id:4155|Hs108|chr18 (171 aa)
initn: 426 init1: 410 opt: 410 Z-score: 434.3 bits: 87.0 E(32554): 7.2e-18
Smith-Waterman score: 410; 98.4% identity (98.4% similar) in 61 aa overlap (134-194:1-61)
110 120 130 140 150 160
pF1KB3 DNTFKDRPSESDELQTIQEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFL
::::::::::::::::::::::::::::::
CCDS42 MASQKRPSQRHGSKYLATASTMDHARHGFL
10 20 30
170 180 190
pF1KB3 PRHRDTGILDSIGRFFGGDRGAPKRGSGKVSSEE
::::::::::::::::::::::::::::: :
CCDS42 PRHRDTGILDSIGRFFGGDRGAPKRGSGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHF
40 50 60 70 80 90
CCDS42 FKNIVTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGT
100 110 120 130 140 150
197 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:30:23 2016 done: Fri Nov 4 02:30:23 2016
Total Scan time: 2.180 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]