Result of FASTA (omim) for
pF1KB3469
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3469, 191 aa
1>>>pF1KB3469 191 - 191 aa - 191 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7633+/-0.000345; mu= 6.2670+/- 0.021
mean_var=105.5843+/-21.136, 0's: 0 Z-trim(116.5): 63 B-trim: 187 in 1/49
Lambda= 0.124817
statistics sampled from 27642 (27709) to 27642 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.325), width: 16
Scan time: 5.900
The best scores are: opt bits E(85289)
NP_001120794 (OMIM: 604478) chromobox protein homo ( 191) 1266 238.1 6.8e-63
NP_036249 (OMIM: 604478) chromobox protein homolog ( 191) 1266 238.1 6.8e-63
NP_001120793 (OMIM: 604478) chromobox protein homo ( 191) 1266 238.1 6.8e-63
NP_006798 (OMIM: 604511) chromobox protein homolog ( 185) 781 150.7 1.3e-36
NP_001120700 (OMIM: 604511) chromobox protein homo ( 185) 781 150.7 1.3e-36
NP_057671 (OMIM: 604477) chromobox protein homolog ( 183) 470 94.7 9.2e-20
XP_005249668 (OMIM: 604477) PREDICTED: chromobox p ( 183) 470 94.7 9.2e-20
NP_009207 (OMIM: 604477) chromobox protein homolog ( 183) 470 94.7 9.2e-20
NP_116036 (OMIM: 602770,613080) chromobox protein ( 211) 218 49.4 4.7e-06
NP_005180 (OMIM: 602770,613080) chromobox protein ( 532) 218 49.6 1e-05
XP_011523684 (OMIM: 602770,613080) PREDICTED: chro ( 586) 218 49.6 1.1e-05
XP_011513299 (OMIM: 603778) PREDICTED: chromodomai ( 522) 217 49.4 1.2e-05
NP_004815 (OMIM: 603778) chromodomain Y-like prote ( 544) 217 49.4 1.2e-05
XP_011528327 (OMIM: 608457) PREDICTED: chromobox p ( 165) 192 44.6 9.9e-05
XP_006724241 (OMIM: 608457) PREDICTED: chromobox p ( 166) 192 44.6 0.0001
NP_059990 (OMIM: 611626) M-phase phosphoprotein 8 ( 860) 203 47.0 0.0001
NP_003646 (OMIM: 603079) E3 SUMO-protein ligase CB ( 560) 200 46.3 0.0001
XP_011533426 (OMIM: 611626) PREDICTED: M-phase pho ( 879) 203 47.0 0.0001
XP_006724239 (OMIM: 608457) PREDICTED: chromobox p ( 200) 192 44.7 0.00012
XP_006724238 (OMIM: 608457) PREDICTED: chromobox p ( 258) 192 44.7 0.00014
XP_006724237 (OMIM: 608457) PREDICTED: chromobox p ( 259) 192 44.7 0.00014
NP_001180353 (OMIM: 606503) histone-lysine N-methy ( 410) 192 44.8 0.00021
XP_011529814 (OMIM: 400016,415000) PREDICTED: test ( 470) 188 44.1 0.00039
NP_733841 (OMIM: 400016,415000) testis-specific ch ( 540) 188 44.2 0.00044
NP_004671 (OMIM: 400016,415000) testis-specific ch ( 554) 188 44.2 0.00045
XP_005261470 (OMIM: 608457) PREDICTED: chromobox p ( 158) 179 42.3 0.00048
XP_016884168 (OMIM: 608457) PREDICTED: chromobox p ( 250) 182 42.9 0.00049
NP_783640 (OMIM: 608457) chromobox protein homolog ( 251) 182 42.9 0.00049
XP_006724240 (OMIM: 608457) PREDICTED: chromobox p ( 192) 179 42.3 0.00057
NP_004816 (OMIM: 400018,415000) testis-specific ch ( 541) 183 43.3 0.00083
NP_001180355 (OMIM: 606503) histone-lysine N-methy ( 230) 174 41.5 0.0012
>>NP_001120794 (OMIM: 604478) chromobox protein homolog (191 aa)
initn: 1266 init1: 1266 opt: 1266 Z-score: 1250.2 bits: 238.1 E(85289): 6.8e-63
Smith-Waterman score: 1266; 100.0% identity (100.0% similar) in 191 aa overlap (1-191:1-191)
10 20 30 40 50 60
pF1KB3 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED
130 140 150 160 170 180
190
pF1KB3 AENKEKETAKS
:::::::::::
NP_001 AENKEKETAKS
190
>>NP_036249 (OMIM: 604478) chromobox protein homolog 5 [ (191 aa)
initn: 1266 init1: 1266 opt: 1266 Z-score: 1250.2 bits: 238.1 E(85289): 6.8e-63
Smith-Waterman score: 1266; 100.0% identity (100.0% similar) in 191 aa overlap (1-191:1-191)
10 20 30 40 50 60
pF1KB3 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED
130 140 150 160 170 180
190
pF1KB3 AENKEKETAKS
:::::::::::
NP_036 AENKEKETAKS
190
>>NP_001120793 (OMIM: 604478) chromobox protein homolog (191 aa)
initn: 1266 init1: 1266 opt: 1266 Z-score: 1250.2 bits: 238.1 E(85289): 6.8e-63
Smith-Waterman score: 1266; 100.0% identity (100.0% similar) in 191 aa overlap (1-191:1-191)
10 20 30 40 50 60
pF1KB3 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED
130 140 150 160 170 180
190
pF1KB3 AENKEKETAKS
:::::::::::
NP_001 AENKEKETAKS
190
>>NP_006798 (OMIM: 604511) chromobox protein homolog 1 [ (185 aa)
initn: 808 init1: 414 opt: 781 Z-score: 778.4 bits: 150.7 E(85289): 1.3e-36
Smith-Waterman score: 781; 63.9% identity (82.7% similar) in 191 aa overlap (1-187:1-183)
10 20 30 40 50
pF1KB3 MGKK-TKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDC
:::: .:. .. :.:::::::::::::::::.:::::::::::.: ::::::.::::
NP_006 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 PELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSAD---DIKSKKKREQSNDIARG
:.::.::... : .: .:::..:::.. :.: : . : :::.:.: . ::
NP_006 PDLIAEFLQSQKTAHE------TDKSEGGKRKAD-SDSEDKGEESKPKKKKEES-EKPRG
70 80 90 100 110
120 130 140 150 160 170
pF1KB3 FERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHA
: ::::::.::::::: :.::::::::..:::::: ::::::::::.::.:::::::::.
NP_006 FARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHS
120 130 140 150 160 170
180 190
pF1KB3 YPEDAENKEKETAKS
:: . ..:. .
NP_006 YPSEDDDKKDDKN
180
>>NP_001120700 (OMIM: 604511) chromobox protein homolog (185 aa)
initn: 808 init1: 414 opt: 781 Z-score: 778.4 bits: 150.7 E(85289): 1.3e-36
Smith-Waterman score: 781; 63.9% identity (82.7% similar) in 191 aa overlap (1-187:1-183)
10 20 30 40 50
pF1KB3 MGKK-TKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDC
:::: .:. .. :.:::::::::::::::::.:::::::::::.: ::::::.::::
NP_001 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 PELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSAD---DIKSKKKREQSNDIARG
:.::.::... : .: .:::..:::.. :.: : . : :::.:.: . ::
NP_001 PDLIAEFLQSQKTAHE------TDKSEGGKRKAD-SDSEDKGEESKPKKKKEES-EKPRG
70 80 90 100 110
120 130 140 150 160 170
pF1KB3 FERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHA
: ::::::.::::::: :.::::::::..:::::: ::::::::::.::.:::::::::.
NP_001 FARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHS
120 130 140 150 160 170
180 190
pF1KB3 YPEDAENKEKETAKS
:: . ..:. .
NP_001 YPSEDDDKKDDKN
180
>>NP_057671 (OMIM: 604477) chromobox protein homolog 3 [ (183 aa)
initn: 449 init1: 449 opt: 470 Z-score: 475.8 bits: 94.7 E(85289): 9.2e-20
Smith-Waterman score: 746; 63.9% identity (80.0% similar) in 180 aa overlap (1-180:11-180)
10 20 30 40 50
pF1KB3 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNT
:::: . . . . ::.:::::::::::.:.:::.::::::.. ::
NP_057 MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 WEPEKNLDCPELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQS
::::.:::::::: :... : :: ....:::: .. .:: ::::::. .
NP_057 WEPEENLDCPELIEAFLNSQKAGKE---------KDGTKRKSLSDSESDDSKSKKKRD-A
70 80 90 100 110
120 130 140 150 160 170
pF1KB3 NDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEE
: ::: :::.::.::::::: :.:::::::::.::::::::::::.::::::::::::
NP_057 ADKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEE
120 130 140 150 160 170
180 190
pF1KB3 RLTWHAYPEDAENKEKETAKS
:::::. :::
NP_057 RLTWHSCPEDEAQ
180
>>XP_005249668 (OMIM: 604477) PREDICTED: chromobox prote (183 aa)
initn: 449 init1: 449 opt: 470 Z-score: 475.8 bits: 94.7 E(85289): 9.2e-20
Smith-Waterman score: 746; 63.9% identity (80.0% similar) in 180 aa overlap (1-180:11-180)
10 20 30 40 50
pF1KB3 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNT
:::: . . . . ::.:::::::::::.:.:::.::::::.. ::
XP_005 MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 WEPEKNLDCPELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQS
::::.:::::::: :... : :: ....:::: .. .:: ::::::. .
XP_005 WEPEENLDCPELIEAFLNSQKAGKE---------KDGTKRKSLSDSESDDSKSKKKRD-A
70 80 90 100 110
120 130 140 150 160 170
pF1KB3 NDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEE
: ::: :::.::.::::::: :.:::::::::.::::::::::::.::::::::::::
XP_005 ADKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEE
120 130 140 150 160 170
180 190
pF1KB3 RLTWHAYPEDAENKEKETAKS
:::::. :::
XP_005 RLTWHSCPEDEAQ
180
>>NP_009207 (OMIM: 604477) chromobox protein homolog 3 [ (183 aa)
initn: 449 init1: 449 opt: 470 Z-score: 475.8 bits: 94.7 E(85289): 9.2e-20
Smith-Waterman score: 746; 63.9% identity (80.0% similar) in 180 aa overlap (1-180:11-180)
10 20 30 40 50
pF1KB3 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNT
:::: . . . . ::.:::::::::::.:.:::.::::::.. ::
NP_009 MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 WEPEKNLDCPELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQS
::::.:::::::: :... : :: ....:::: .. .:: ::::::. .
NP_009 WEPEENLDCPELIEAFLNSQKAGKE---------KDGTKRKSLSDSESDDSKSKKKRD-A
70 80 90 100 110
120 130 140 150 160 170
pF1KB3 NDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEE
: ::: :::.::.::::::: :.:::::::::.::::::::::::.::::::::::::
NP_009 ADKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEE
120 130 140 150 160 170
180 190
pF1KB3 RLTWHAYPEDAENKEKETAKS
:::::. :::
NP_009 RLTWHSCPEDEAQ
180
>>NP_116036 (OMIM: 602770,613080) chromobox protein homo (211 aa)
initn: 201 init1: 201 opt: 218 Z-score: 229.6 bits: 49.4 E(85289): 4.7e-06
Smith-Waterman score: 218; 41.8% identity (75.9% similar) in 79 aa overlap (13-91:5-82)
10 20 30 40 50 60
pF1KB3 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP
:: :. ...: .:..:. ::..:::.::.:.: .::.::::.:. :
NP_116 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDP
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG
.:. :.:: .. :: .: : .. .. ::
NP_116 RLLLAFQKK-EHEKEVQNRKRGKRPRGRPRKLTAMSSCSRRSKLKVGGCAGYADPTSQHP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED
NP_116 LGVGGRQREGLGPSGRGWHFCQQSVPLLGKQEPPFFLSLSFCCQGPQPAESSSPPLPGAS
120 130 140 150 160 170
>>NP_005180 (OMIM: 602770,613080) chromobox protein homo (532 aa)
initn: 221 init1: 202 opt: 218 Z-score: 223.5 bits: 49.6 E(85289): 1e-05
Smith-Waterman score: 218; 41.8% identity (75.9% similar) in 79 aa overlap (13-91:5-82)
10 20 30 40 50 60
pF1KB3 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP
:: :. ...: .:..:. ::..:::.::.:.: .::.::::.:. :
NP_005 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDP
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG
.:. :.:: .. :: .: : .. .. ::
NP_005 RLLLAFQKK-EHEKEVQNRKRGKRPRGRPRKLTAMSSCSRRSKLKEPDAPSKSKSSSSSS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED
NP_005 SSTSSSSSSDEEDDSDLDAKRGPRGRETHPVPQKKAQILVAKPELKDPIRKKRGRKPLPP
120 130 140 150 160 170
191 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 21:02:50 2016 done: Fri Nov 4 21:02:51 2016
Total Scan time: 5.900 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]