FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3469, 191 aa
  1>>>pF1KB3469 191 - 191 aa - 191 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8566+/-0.000841; mu= 5.7429+/- 0.050
 mean_var=97.4154+/-19.443, 0's: 0 Z-trim(109.1): 34  B-trim: 23 in 1/50
 Lambda= 0.129945
 statistics sampled from 10647 (10677) to 10647 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.328), width:  16
 Scan time:  1.820

The best scores are:                                      opt bits E(32554)
CCDS8875.1 CBX5 gene_id:23468|Hs108|chr12          ( 191) 1266 247.1 4.9e-66
CCDS11525.1 CBX1 gene_id:10951|Hs108|chr17         ( 185)  781 156.2 1.1e-38
CCDS5398.1 CBX3 gene_id:11335|Hs108|chr7           ( 183)  470 97.9 3.9e-21


>>CCDS8875.1 CBX5 gene_id:23468|Hs108|chr12               (191 aa)
 initn: 1266 init1: 1266 opt: 1266  Z-score: 1299.1  bits: 247.1 E(32554): 4.9e-66
Smith-Waterman score: 1266; 100.0% identity (100.0% similar) in 191 aa overlap (1-191:1-191)

               10        20        30        40        50        60
pF1KB3 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED
              130       140       150       160       170       180

              190 
pF1KB3 AENKEKETAKS
       :::::::::::
CCDS88 AENKEKETAKS
              190 

>>CCDS11525.1 CBX1 gene_id:10951|Hs108|chr17              (185 aa)
 initn: 808 init1: 414 opt: 781  Z-score: 807.9  bits: 156.2 E(32554): 1.1e-38
Smith-Waterman score: 781; 63.9% identity (82.7% similar) in 191 aa overlap (1-187:1-183)

                10        20        30        40        50         
pF1KB3 MGKK-TKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDC
       :::: .:. ..    :.:::::::::::::::::.:::::::::::.: ::::::.::::
CCDS11 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC
               10        20        30        40        50        60

      60        70        80        90          100       110      
pF1KB3 PELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSAD---DIKSKKKREQSNDIARG
       :.::.::... :  .:       .:::..:::.. :.: :   . : :::.:.: .  ::
CCDS11 PDLIAEFLQSQKTAHE------TDKSEGGKRKAD-SDSEDKGEESKPKKKKEES-EKPRG
               70              80         90       100        110  

        120       130       140       150       160       170      
pF1KB3 FERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHA
       : ::::::.::::::: :.::::::::..:::::: ::::::::::.::.:::::::::.
CCDS11 FARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHS
            120       130       140       150       160       170  

        180       190 
pF1KB3 YPEDAENKEKETAKS
       :: . ..:. .    
CCDS11 YPSEDDDKKDDKN  
            180       

>>CCDS5398.1 CBX3 gene_id:11335|Hs108|chr7                (183 aa)
 initn: 449 init1: 449 opt: 470  Z-score: 492.9  bits: 97.9 E(32554): 3.9e-21
Smith-Waterman score: 746; 63.9% identity (80.0% similar) in 180 aa overlap (1-180:11-180)

                         10        20        30        40        50
pF1KB3           MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNT
                 :::: .  . .    . ::.:::::::::::.:.:::.::::::..  ::
CCDS53 MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNT
               10        20        30        40        50        60

               60        70        80        90       100       110
pF1KB3 WEPEKNLDCPELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQS
       ::::.::::::::  :... :  ::         ....::::  .. .:: ::::::. .
CCDS53 WEPEENLDCPELIEAFLNSQKAGKE---------KDGTKRKSLSDSESDDSKSKKKRD-A
               70        80                 90       100        110

              120       130       140       150       160       170
pF1KB3 NDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEE
        :  ::: :::.::.::::::: :.:::::::::.::::::::::::.::::::::::::
CCDS53 ADKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEE
              120       130       140       150       160       170

              180       190 
pF1KB3 RLTWHAYPEDAENKEKETAKS
       :::::. :::           
CCDS53 RLTWHSCPEDEAQ        
              180           




191 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:02:49 2016 done: Fri Nov  4 21:02:50 2016
 Total Scan time:  1.820 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]