Result of FASTA (ccds) for
pF1KB3458
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3458, 1117 aa
1>>>pF1KB3458 1117 - 1117 aa - 1117 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.2720+/-0.000979; mu= -8.4881+/- 0.059
mean_var=357.6892+/-74.551, 0's: 0 Z-trim(115.9): 82 B-trim: 0 in 0/52
Lambda= 0.067814
statistics sampled from 16402 (16481) to 16402 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.506), width: 16
Scan time: 5.670
The best scores are: opt bits E(32554)
CCDS75455.1 TRERF1 gene_id:55809|Hs108|chr6 (1220) 4043 410.0 1.6e-113
CCDS4867.1 TRERF1 gene_id:55809|Hs108|chr6 (1200) 4019 407.7 8.2e-113
CCDS9819.1 ELMSAN1 gene_id:91748|Hs108|chr14 (1045) 993 111.6 9.6e-24
CCDS46133.2 ZNF541 gene_id:84215|Hs108|chr19 (1346) 720 85.0 1.3e-15
>>CCDS75455.1 TRERF1 gene_id:55809|Hs108|chr6 (1220 aa)
initn: 3924 init1: 3885 opt: 4043 Z-score: 2151.4 bits: 410.0 E(32554): 1.6e-113
Smith-Waterman score: 7000; 91.0% identity (91.0% similar) in 1149 aa overlap (72-1117:72-1220)
50 60 70 80 90 100
pF1KB3 GGGMDAPQASPISPHFPQDTRDGLGLPVGSKNLGQMDTSRQGGWGSHAGPGNHVQLRGNL
::::::::::::::::::::::::::::::
CCDS75 GGGMDAPQASPISPHFPQDTRDGLGLPVGSKNLGQMDTSRQGGWGSHAGPGNHVQLRGNL
50 60 70 80 90 100
110 120 130 140 150 160
pF1KB3 ANSNMMWGAPAQAEPTDGYQYTYSQASEIRTQKLTSGVLHKLDSFTQVFANQNLRIQVNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ANSNMMWGAPAQAEPTDGYQYTYSQASEIRTQKLTSGVLHKLDSFTQVFANQNLRIQVNN
110 120 130 140 150 160
170 180 190 200 210 220
pF1KB3 MAQVLHTQSAVMDGAPDSALRQLLSQKPMEPPAPAIPSRYQQVPQQPHPGFTGGLSKPAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MAQVLHTQSAVMDGAPDSALRQLLSQKPMEPPAPAIPSRYQQVPQQPHPGFTGGLSKPAL
170 180 190 200 210 220
230 240 250 260 270 280
pF1KB3 QVGQHPTQGHLYYDYQQPLAQVPVQGGQPLQAPQMLSQHMQQMQQHQYYPPQQQQQAGQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QVGQHPTQGHLYYDYQQPLAQVPVQGGQPLQAPQMLSQHMQQMQQHQYYPPQQQQQAGQQ
230 240 250 260 270 280
290 300 310 320 330 340
pF1KB3 RISMQEIQTQPQQIRPSQPQPPPQQQQPQQLQLQQRQGSMQIPQYYQPQPMMQHLQEQQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RISMQEIQTQPQQIRPSQPQPPPQQQQPQQLQLQQRQGSMQIPQYYQPQPMMQHLQEQQQ
290 300 310 320 330 340
350 360 370 380 390 400
pF1KB3 QQMHLQPPSYHRDPHQYTPEQAHTVQLIPLGSMSQYYYQEPQQPYSHPLYQQSHLSQHQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QQMHLQPPSYHRDPHQYTPEQAHTVQLIPLGSMSQYYYQEPQQPYSHPLYQQSHLSQHQQ
350 360 370 380 390 400
410 420 430 440 450 460
pF1KB3 REDSQLKTYSSDRQAQAMLSSHGDLGPPDTGMGDPASSDLTRVSSTLPHRPLLSPSGIHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 REDSQLKTYSSDRQAQAMLSSHGDLGPPDTGMGDPASSDLTRVSSTLPHRPLLSPSGIHL
410 420 430 440 450 460
470 480 490 500 510 520
pF1KB3 NNMGPQHQQLSPSAMWPQMHLPDGRAQPGSPESSGQPKGAFGEQFDAKNKLTCSICLKEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NNMGPQHQQLSPSAMWPQMHLPDGRAQPGSPESSGQPKGAFGEQFDAKNKLTCSICLKEF
470 480 490 500 510 520
530 540
pF1KB3 KNLPALNGHMRSHGGMRASPNLKQE-----------------------------------
:::::::::::::::::::::::::
CCDS75 KNLPALNGHMRSHGGMRASPNLKQEEGEKVLPPQPQPPLPPPPPPPPPPQLPPEAESLTP
530 540 550 560 570 580
pF1KB3 ------------------------------------------------------------
CCDS75 MVMPVSVPVKLLPPKPSSQGFTNSTVAAPSARDKPASSMSDDEMPVLVRMTLSPPHSPQG
590 600 610 620 630 640
550 560 570 580 590
pF1KB3 --------IPRKHQPSVPKAEEPLKTVQEKKKFRHRPEPLFIPPPPSYNPNPAASYSGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AAPRTPAEIPRKHQPSVPKAEEPLKTVQEKKKFRHRPEPLFIPPPPSYNPNPAASYSGAT
650 660 670 680 690 700
600 610 620 630 640 650
pF1KB3 LYQSQLRSPRVLGDHLLLDPTHELPPYTPPPMLSPVRQGSGLFSNVLISGHGPGAHPQLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LYQSQLRSPRVLGDHLLLDPTHELPPYTPPPMLSPVRQGSGLFSNVLISGHGPGAHPQLP
710 720 730 740 750 760
660 670 680 690 700 710
pF1KB3 LTPLTPTPRVLLCRSNSIDGSNVTVTPGPGEQTVDVEPRINIGLRFQAEIPELQDISALA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LTPLTPTPRVLLCRSNSIDGSNVTVTPGPGEQTVDVEPRINIGLRFQAEIPELQDISALA
770 780 790 800 810 820
720 730 740 750 760 770
pF1KB3 QDTHKATLVWKPWPELENHDLQQRVENLLNLCCSSALPGGGTNSEFALHSLFEAKGDVMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QDTHKATLVWKPWPELENHDLQQRVENLLNLCCSSALPGGGTNSEFALHSLFEAKGDVMV
830 840 850 860 870 880
780 790 800 810 820 830
pF1KB3 ALEMLLLRKPVRLKCHPLANYHYAGSDKWTSLERKLFNKALATYSKDFIFVQKMVKSKTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ALEMLLLRKPVRLKCHPLANYHYAGSDKWTSLERKLFNKALATYSKDFIFVQKMVKSKTV
890 900 910 920 930 940
840 850 860 870 880 890
pF1KB3 AQCVEYYYTWKKIMRLGRKHRTRLAEIIDDCVTSEEEEELEEEEEEDPEEDRKSTKEEES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AQCVEYYYTWKKIMRLGRKHRTRLAEIIDDCVTSEEEEELEEEEEEDPEEDRKSTKEEES
950 960 970 980 990 1000
900 910 920 930 940 950
pF1KB3 EVPKSPEPPPVPVLAPTEGPPLQALGQPSGSFICEMPNCGAVFSSRQALNGHARIHGGTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EVPKSPEPPPVPVLAPTEGPPLQALGQPSGSFICEMPNCGAVFSSRQALNGHARIHGGTN
1010 1020 1030 1040 1050 1060
960 970 980 990 1000 1010
pF1KB3 QVTKARGAIPSGKQKPGGTQSGYCSVKSSPSHSTTSGETDPTTIFPCKECGKVFFKIKSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QVTKARGAIPSGKQKPGGTQSGYCSVKSSPSHSTTSGETDPTTIFPCKECGKVFFKIKSR
1070 1080 1090 1100 1110 1120
1020 1030 1040 1050 1060 1070
pF1KB3 NAHMKTHRQQEEQQRQKAQKAAFAAEMAATIERTTGPVGAPGLLPLDQLSLIKPIKDVDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NAHMKTHRQQEEQQRQKAQKAAFAAEMAATIERTTGPVGAPGLLPLDQLSLIKPIKDVDI
1130 1140 1150 1160 1170 1180
1080 1090 1100 1110
pF1KB3 LDDDVVQQLGGVMEEAEVVDTDLLLDDQDSVLLQGDAEL
:::::::::::::::::::::::::::::::::::::::
CCDS75 LDDDVVQQLGGVMEEAEVVDTDLLLDDQDSVLLQGDAEL
1190 1200 1210 1220
>>CCDS4867.1 TRERF1 gene_id:55809|Hs108|chr6 (1200 aa)
initn: 3941 init1: 3873 opt: 4019 Z-score: 2138.8 bits: 407.7 E(32554): 8.2e-113
Smith-Waterman score: 7187; 92.8% identity (92.8% similar) in 1149 aa overlap (52-1117:52-1200)
30 40 50 60 70 80
pF1KB3 QQPPLGVHSGLNHNYGNAVTGGGMDAPQASPISPHFPQDTRDGLGLPVGSKNLGQMDTSR
::::::::::::::::::::::::::::::
CCDS48 QQPPLGVHSGLNHNYGNAVTGGGMDAPQASPISPHFPQDTRDGLGLPVGSKNLGQMDTSR
30 40 50 60 70 80
90 100 110 120 130 140
pF1KB3 QGGWGSHAGPGNHVQLRGNLANSNMMWGAPAQAEPTDGYQYTYSQASEIRTQKLTSGVLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 QGGWGSHAGPGNHVQLRGNLANSNMMWGAPAQAEPTDGYQYTYSQASEIRTQKLTSGVLH
90 100 110 120 130 140
150 160 170 180 190 200
pF1KB3 KLDSFTQVFANQNLRIQVNNMAQVLHTQSAVMDGAPDSALRQLLSQKPMEPPAPAIPSRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 KLDSFTQVFANQNLRIQVNNMAQVLHTQSAVMDGAPDSALRQLLSQKPMEPPAPAIPSRY
150 160 170 180 190 200
210 220 230 240 250 260
pF1KB3 QQVPQQPHPGFTGGLSKPALQVGQHPTQGHLYYDYQQPLAQVPVQGGQPLQAPQMLSQHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 QQVPQQPHPGFTGGLSKPALQVGQHPTQGHLYYDYQQPLAQVPVQGGQPLQAPQMLSQHM
210 220 230 240 250 260
270 280 290 300 310 320
pF1KB3 QQMQQHQYYPPQQQQQAGQQRISMQEIQTQPQQIRPSQPQPPPQQQQPQQLQLQQRQGSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 QQMQQHQYYPPQQQQQAGQQRISMQEIQTQPQQIRPSQPQPPPQQQQPQQLQLQQRQGSM
270 280 290 300 310 320
330 340 350 360 370 380
pF1KB3 QIPQYYQPQPMMQHLQEQQQQQMHLQPPSYHRDPHQYTPEQAHTVQLIPLGSMSQYYYQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 QIPQYYQPQPMMQHLQEQQQQQMHLQPPSYHRDPHQYTPEQAHTVQLIPLGSMSQYYYQE
330 340 350 360 370 380
390 400 410 420 430 440
pF1KB3 PQQPYSHPLYQQSHLSQHQQREDSQLKTYSSDRQAQAMLSSHGDLGPPDTGMGDPASSDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 PQQPYSHPLYQQSHLSQHQQREDSQLKTYSSDRQAQAMLSSHGDLGPPDTGMGDPASSDL
390 400 410 420 430 440
450 460 470 480 490 500
pF1KB3 TRVSSTLPHRPLLSPSGIHLNNMGPQHQQLSPSAMWPQMHLPDGRAQPGSPESSGQPKGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 TRVSSTLPHRPLLSPSGIHLNNMGPQHQQLSPSAMWPQMHLPDGRAQPGSPESSGQPKGA
450 460 470 480 490 500
510 520 530 540
pF1KB3 FGEQFDAKNKLTCSICLKEFKNLPALNGHMRSHGGMRASPNLKQE---------------
:::::::::::::::::::::::::::::::::::::::::::::
CCDS48 FGEQFDAKNKLTCSICLKEFKNLPALNGHMRSHGGMRASPNLKQEEGEKVLPPQPQPPLP
510 520 530 540 550 560
pF1KB3 ------------------------------------------------------------
CCDS48 PPPPPPPPPQLPPEAESLTPMVMPVSVPVKLLPPKPSSQGFTNSTVAAPSARDKPASSMS
570 580 590 600 610 620
550 560 570 580 590
pF1KB3 --------IPRKHQPSVPKAEEPLKTVQEKKKFRHRPEPLFIPPPPSYNPNPAASYSGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 DDEMPVLEIPRKHQPSVPKAEEPLKTVQEKKKFRHRPEPLFIPPPPSYNPNPAASYSGAT
630 640 650 660 670 680
600 610 620 630 640 650
pF1KB3 LYQSQLRSPRVLGDHLLLDPTHELPPYTPPPMLSPVRQGSGLFSNVLISGHGPGAHPQLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LYQSQLRSPRVLGDHLLLDPTHELPPYTPPPMLSPVRQGSGLFSNVLISGHGPGAHPQLP
690 700 710 720 730 740
660 670 680 690 700 710
pF1KB3 LTPLTPTPRVLLCRSNSIDGSNVTVTPGPGEQTVDVEPRINIGLRFQAEIPELQDISALA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LTPLTPTPRVLLCRSNSIDGSNVTVTPGPGEQTVDVEPRINIGLRFQAEIPELQDISALA
750 760 770 780 790 800
720 730 740 750 760 770
pF1KB3 QDTHKATLVWKPWPELENHDLQQRVENLLNLCCSSALPGGGTNSEFALHSLFEAKGDVMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 QDTHKATLVWKPWPELENHDLQQRVENLLNLCCSSALPGGGTNSEFALHSLFEAKGDVMV
810 820 830 840 850 860
780 790 800 810 820 830
pF1KB3 ALEMLLLRKPVRLKCHPLANYHYAGSDKWTSLERKLFNKALATYSKDFIFVQKMVKSKTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 ALEMLLLRKPVRLKCHPLANYHYAGSDKWTSLERKLFNKALATYSKDFIFVQKMVKSKTV
870 880 890 900 910 920
840 850 860 870 880 890
pF1KB3 AQCVEYYYTWKKIMRLGRKHRTRLAEIIDDCVTSEEEEELEEEEEEDPEEDRKSTKEEES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 AQCVEYYYTWKKIMRLGRKHRTRLAEIIDDCVTSEEEEELEEEEEEDPEEDRKSTKEEES
930 940 950 960 970 980
900 910 920 930 940 950
pF1KB3 EVPKSPEPPPVPVLAPTEGPPLQALGQPSGSFICEMPNCGAVFSSRQALNGHARIHGGTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 EVPKSPEPPPVPVLAPTEGPPLQALGQPSGSFICEMPNCGAVFSSRQALNGHARIHGGTN
990 1000 1010 1020 1030 1040
960 970 980 990 1000 1010
pF1KB3 QVTKARGAIPSGKQKPGGTQSGYCSVKSSPSHSTTSGETDPTTIFPCKECGKVFFKIKSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 QVTKARGAIPSGKQKPGGTQSGYCSVKSSPSHSTTSGETDPTTIFPCKECGKVFFKIKSR
1050 1060 1070 1080 1090 1100
1020 1030 1040 1050 1060 1070
pF1KB3 NAHMKTHRQQEEQQRQKAQKAAFAAEMAATIERTTGPVGAPGLLPLDQLSLIKPIKDVDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 NAHMKTHRQQEEQQRQKAQKAAFAAEMAATIERTTGPVGAPGLLPLDQLSLIKPIKDVDI
1110 1120 1130 1140 1150 1160
1080 1090 1100 1110
pF1KB3 LDDDVVQQLGGVMEEAEVVDTDLLLDDQDSVLLQGDAEL
:::::::::::::::::::::::::::::::::::::::
CCDS48 LDDDVVQQLGGVMEEAEVVDTDLLLDDQDSVLLQGDAEL
1170 1180 1190 1200
>>CCDS9819.1 ELMSAN1 gene_id:91748|Hs108|chr14 (1045 aa)
initn: 739 init1: 505 opt: 993 Z-score: 539.7 bits: 111.6 E(32554): 9.6e-24
Smith-Waterman score: 1156; 32.1% identity (54.4% similar) in 953 aa overlap (175-1010:115-1045)
150 160 170 180 190
pF1KB3 SFTQVFANQNLRIQVNNMAQVLHTQSAVMDGAPDSALRQLLSQKPMEPPAPAIP-----S
:. ::. .: .: .:: . :
CCDS98 AAMLSQQVASVKWPNSVMAPGRGPERGGGGGVSDSSWQQ----QPGQPPPHSTWNCHSLS
90 100 110 120 130 140
200 210 220 230 240 250
pF1KB3 RYQQVPQQPHPGFTGGLSKPALQVGQHPTQGHLYYD-YQQPLA--QVPVQGGQPLQAPQM
:. . .:::: .. .. : : : .:. .: .. :.: ::: .
CCDS98 LYSATKGSPHPGVGVPTYYNHPEALKREKAGGPQLDRYVRPMMPQKVQLEVGRP-QAP-L
150 160 170 180 190
260 270 280 290 300 310
pF1KB3 LSQHMQQMQQHQYYPPQQQQQAGQQRISMQEIQTQPQQIRPSQPQPPPQQQQPQQLQLQQ
: : . .: : : : : .... : .. : : :: .::: :: : ::
CCDS98 NSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPVAAFPPQKQQQQQQPQQQQ
200 210 220 230 240 250
320 330 340 350 360
pF1KB3 RQGSMQIPQY--YQPQPMMQHLQEQQQQQMHLQP--P------SYHR-DPHQYTPEQAHT
.: . .::. .. : . :: :.. ::: : ..: :. . :. .
CCDS98 QQQQAALPQMPLFENFYSMPQQPSQQPQDFGLQPAGPLGQSHLAHHSMAPYPFPPNPDMN
260 270 280 290 300 310
370 380 390 400 410 420
pF1KB3 VQLIPLGSMSQYYYQEPQQPYSH-PLYQQSH-LSQHQQREDSQLKTYSSDRQAQA---ML
.: .. : .: : . :. ..:. ::.. : : ... .: ..
CCDS98 PELRK--ALLQDSAPQPALPQVQIPFPRRSRRLSKEGILPPSALDGAGTQPGQEATGNLF
320 330 340 350 360 370
430 440 450 460 470
pF1KB3 SSHGDLG-PPDTGMGDPASSDL-----TRVSSTLPHRPLLSPSGIHLNN--MGPQHQQLS
: : :: ..:.: : : :. :: :.:.: . . :: .. . .
CCDS98 LHHWPLQQPPPGSLGQPHPEALGFPLELRESQLLPDGERLAPNGREREAPAMGSEEGMRA
380 390 400 410 420 430
480 490 500 510
pF1KB3 PSAMWPQMHLPDG------RAQPGSPESS--------------GQPKGAFGEQFDAKNKL
:. . : : : . .: :.. . : . : . :. :
CCDS98 VSTGDCGQVLRGGVIQSTRRRRRASQEANLLTLAQKAVELASLQNAKDGSGSEEKRKSVL
440 450 460 470 480 490
520 530 540
pF1KB3 TCSI-CLKEFKNLPAL--------NGHM----------RS--------HGGMRASPNLKQ
. . : ::.. :.: .: . :. ::. . . .
CCDS98 ASTTKCGVEFSE-PSLATKRAREDSGMVPLIIPVSVPVRTVDPTEAAQAGGLDEDGKGPE
500 510 520 530 540 550
550 560 570 580
pF1KB3 EIPRKHQPSV----------P------KAEE-PLKTVQE----KKKFRHRPEPLFIPPPP
. : .:.::: : .::. .: : : : : :::::.::
CCDS98 QNPAEHKPSVIVTRRRSTRIPGTDAQAQAEDMNVKLEGEPSVRKPKQRPRPEPLIIPTKA
560 570 580 590 600 610
590 600 610 620 630 640
pF1KB3 SYNPNPAASYSGATLYQSQLRSPRVLGDHLLLDPTHELPPYTPPPMLSPVRQGSGLFSNV
. : . ::. : :::.:::: :.:: . . :::::::::.:::::.::::. :.
CCDS98 GTFIAPPV-YSNITPYQSHLRSPVRLADHPS-ERSFELPPYTPPPILSPVREGSGLYFNA
620 630 640 650 660 670
650 660 670 680 690 700
pF1KB3 LISGHGPGAHPQLPLTPLTPTPRVLLCRSNSIDGSNVTVTPGPGEQT-VDVEPRINIGLR
.:: : : :.:: . . :.:: :.:: . . : :: : :..:::::.: :
CCDS98 IISTSTIPAPP--PITPKS-AHRTLL-RTNSAEVTP-PVLSVMGEATPVSIEPRINVGSR
680 690 700 710 720
710 720 730 740 750 760
pF1KB3 FQAEIPELQDISALAQDTHKATLVWKPWPELENHDLQQR-VENLLNLCCSSALPGGGTNS
:::::: ..: . : : ::: :::.:: .::. .:: ::.::. ::: .::.:::.
CCDS98 FQAEIPLMRDRALAAADPHKADLVWQPWEDLESSREKQRQVEDLLTAACSSIFPGAGTNQ
730 740 750 760 770 780
770 780 790 800 810 820
pF1KB3 EFALHSLFEAKGDVMVALEMLLLRKPVRLKCHPLANYHYAGSDKWTSLERKLFNKALATY
:.::: : :..::.. .:. :::.::.: . ::::.:::.:::.: :::::::..: :
CCDS98 ELALHCLHESRGDILETLNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLFNKGIAIY
790 800 810 820 830 840
830 840 850 860 870 880
pF1KB3 SKDFIFVQKMVKSKTVAQCVEYYYTWKKIMRLGRKHRTRLAEI-IDDCVTSEEEEELEEE
.:::..:::....::::::::.:::.:: ...::. .... .: ...:: :.. .
CCDS98 KKDFFLVQKLIQTKTVAQCVEFYYTYKKQVKIGRNGTLTFGDVDTSDEKSAQEEVEVDIK
850 860 870 880 890 900
890 900 910 920 930
pF1KB3 EEED----PEEDRKSTKEEESEVPKSPEPPPVPVLAPTEGPPLQALG-QPSGSFICEMPN
. : :.: .::. : :: : . : : .: : : :
CCDS98 TSQKFPRVPLPRRESPSEERLE-PKREVKEPRKE-GEEEVPEIQEKEEQEEGR---ERSR
910 920 930 940 950 960
940 950 960 970 980
pF1KB3 CGAVFSSRQALNGHAR------IHGGTNQVTKARGAIPSGKQKPGGTQSGYC---SVKSS
.:. .. :.:... ... ... . :. : : . : .: : :..
CCDS98 RAAAVKATQTLQANESASDILILRSHESNAPGSAGGQASEKPREGTGKSRRALPFSEKKK
970 980 990 1000 1010 1020
990 1000 1010 1020 1030 1040
pF1KB3 PSHSTTSGETDPTTIFPCKECGKVFFKIKSRNAHMKTHRQQEEQQRQKAQKAAFAAEMAA
... .. ... .: ::::.::.
CCDS98 KTETFSKTQNQENT-FPCKKCGR
1030 1040
>>CCDS46133.2 ZNF541 gene_id:84215|Hs108|chr19 (1346 aa)
initn: 903 init1: 463 opt: 720 Z-score: 393.7 bits: 85.0 E(32554): 1.3e-15
Smith-Waterman score: 957; 28.5% identity (51.6% similar) in 943 aa overlap (109-1029:529-1315)
80 90 100 110 120 130
pF1KB3 TSRQGGWGSHAGPGNHVQLRGNLANSNMMWGAPAQAEPTDGYQYTYSQASEIRTQKLTSG
: ::.: : . :: . :.:
CCDS46 CAPKKVKVDCDSFLCQNPGEPGLQEAQKAGGLPADASPLFRQLFLKSQ------EPLVSH
500 510 520 530 540 550
140 150 160 170 180 190
pF1KB3 VLHKLDSFTQVFANQNLRIQVNNMAQVLHTQSAVMDGAPDSALRQLLSQKPMEPP--APA
.... : .. .: :: . .. .. .: . .: : .::: : . :..:: :::
CCDS46 --EQMQVFQMITKSQ--RIFSHAQVAAVSSQLPAPEGKP-AALRPLQGPWPQQPPPLAPA
560 570 580 590 600
200 210 220 230 240 250
pF1KB3 IPSRYQQVPQQPHP-GFTGGLSKPALQVGQHPTQGHLYYDYQQPL--AQVPVQGGQPLQA
. : . : .:. : . : . : .. . : : . : : ::. :: :
CCDS46 VDSLHAG-PGNPEAEGSPARRRKTTPGVPREASPGSTRRDAKGGLKVAAVPT----PLAA
610 620 630 640 650 660
260 270 280 290 300 310
pF1KB3 PQMLSQHMQQMQQHQYYPPQQQQQAGQQRISMQEIQTQPQQIRPSQ--PQPPPQQQQPQQ
:.. .. .... .: .... .....: . : : .: . :: . : .
CCDS46 PSLDPSRNPDISSL-----AKQLRSSKGTLDLEDIFPSTGQ-RQTQLGGEEPPGASLPGK
670 680 690 700 710
320 330 340 350 360
pF1KB3 LQLQQRQGSMQIPQYYQPQPMMQHLQEQQQQQMHLQP--PSYHRDPHQYTPEQAHTVQLI
: ..:. . . : .. . : ..... .. : . . .
CCDS46 -QAPAENGAASRITKGEKGPACSRGGGYRLLGNPRAPRFSGFRKEKAKMDMCCAASPSQV
720 730 740 750 760 770
370 380 390 400 410 420
pF1KB3 PLGSMSQYYYQEPQQPYSHPLYQQSHLSQHQQREDSQLKTYSSDRQAQAMLSSHGDLGPP
..:.:. : .: ..:.:. .. . ... . . . :
CCDS46 AMASFSS--AGPPADP------SKSKLTIFSRIQGGNIYRLPHPVKEENVA------GRG
780 790 800 810 820
430 440 450 460 470 480
pF1KB3 DTGMGDPASSDLTRVSSTLPHRPLLSPSGIHLNNMGPQHQQLSPSAMWPQMHLPDGRAQP
. :.: .: :. ::. . . : . .. : . .. : .::. : :. .:
CCDS46 NQQNGSP--TDWTKPRSTFVCK---NCSQMFYTEKGLSSHMCFHSDQWPS---PRGKQEP
830 840 850 860 870
490 500 510 520 530 540
pF1KB3 GSPESSGQPKGAFGEQFDAKNKLTCSICLKEFKNLPALNGHMRSHGGMRASP-NLKQEIP
.:: .: . . :. . . : . :.: . : ::
CCDS46 Q----------VFGTEFCKPLRQV----LRPEGDRHSPPGTKKPLDPTAAAPLVVPQSIP
880 890 900 910
550 560 570 580 590
pF1KB3 ----RKHQPSVPKAEEP------LKTVQEKKKFRHRPEPLFIPPPPSYNPNPAASYSGAT
.: :. ..: : ....: ..:: :: . .:.::. .
CCDS46 VVPVTRHIGSMAMGQEKDGEERDSKESSQQRKRKKRP-----PPSTAGEPGPAGCH----
920 930 940 950 960 970
600 610 620 630 640 650
pF1KB3 LYQSQLRSPRVLGDHLLLDPTHELPPYTPPPMLSPVRQGSGLFSNVLISGHGPGAHPQLP
::.:::: : : :: . ::::::::::.:.:::.. :.: : .. ::
CCDS46 --QSRLRSPMFLVD-CLLKGLFQCSPYTPPPMLSPIREGSGVYFNTLCSTSTQASPDQLI
980 990 1000 1010 1020
660 670 680 690 700 710
pF1KB3 LTPLTPTPRVLLCRSNSIDGS-NVTVTPGPGEQTVDVEPRINIGLRFQAEIPELQDISAL
. : ...::: .. :. . ...::.:::: ::::::::::. :
CCDS46 SSML-----------DQVDGSFGICVVKD--DTKISIEPHINIGSRFQAEIPELQERSLA
1030 1040 1050 1060 1070
720 730 740 750 760 770
pF1KB3 AQDTHKATLVWKPWPELE-NHDLQQRVENLLNLCCSSALPGGGTNSEFALHSLFEAKGDV
. : : :.:::::: .. . . :.:: .: :. :::..:::::: :.::: : ::.:.:
CCDS46 GTDEHVASLVWKPWGDMMISSETQDRVTELCNVACSSVMPGGGTNLELALHCLHEAQGNV
1080 1090 1100 1110 1120 1130
780 790 800 810 820 830
pF1KB3 MVALEMLLLRKPVRLKCHPLANYHYAGSDKWTSLERKLFNKALATYSKDFIFVQKMVKSK
.:::: :::: : . . : ::.:.:.::: :: .:..::.::. ...::: ...::...:
CCDS46 QVALETLLLRGPHKPRTHLLADYRYTGSDVWTPIEKRLFKKAFYAHKKDFYLIHKMIQTK
1140 1150 1160 1170 1180 1190
840 850 860 870 880 890
pF1KB3 TVAQCVEYYYTWKKIMRLGRKHRTRLAEIIDDCVTSEEEEELEEEEEEDPEEDRKSTKEE
:::::::::: :::.... :: . ::.. ...::: ...
CCDS46 TVAQCVEYYYIWKKMIKF-------------DCGRAPG---LEKRVKREPEEVERT----
1200 1210 1220 1230
900 910 920 930 940 950
pF1KB3 ESEVPKSPEPPPVPVLAPTEGPPLQALGQPSGSFICEMPNCGAVFSSRQALNGHARIHGG
: .:: ::. : :: : :.. . :.. :: :.
CCDS46 EEKVPCSPRERPSH--HPT--PKLKTKSYRRESILSSSPNAGS-----------------
1240 1250 1260 1270
960 970 980 990 1000 1010
pF1KB3 TNQVTKARGAIPSGKQKPGGTQSGYCSVKSSPSHSTTSGETDPTTIFPCKECGKVFFKIK
: .: : .. ::::.:: .:: :::
CCDS46 ----------------------------KRTPE---LLGSAESQGIFPCRECERVFDKIK
1280 1290 1300
1020 1030 1040 1050 1060 1070
pF1KB3 SRNAHMKTHRQQEEQQRQKAQKAAFAAEMAATIERTTGPVGAPGLLPLDQLSLIKPIKDV
::::::: :: :.
CCDS46 SRNAHMKRHRLQDHVEPIIRVKWPVKPFQLKEEELGADIGPLQW
1310 1320 1330 1340
1117 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 13:17:59 2016 done: Thu Nov 3 13:18:00 2016
Total Scan time: 5.670 Total Display time: 0.210
Function used was FASTA [36.3.4 Apr, 2011]