FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3457, 176 aa
  1>>>pF1KB3457 176 - 176 aa - 176 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4173+/-0.00082; mu= 3.4441+/- 0.049
 mean_var=123.7415+/-24.771, 0's: 0 Z-trim(111.7): 14  B-trim: 305 in 2/51
 Lambda= 0.115297
 statistics sampled from 12601 (12611) to 12601 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.387), width:  16
 Scan time:  2.070

The best scores are:                                      opt bits E(32554)
CCDS744.1 DR1 gene_id:1810|Hs108|chr1              ( 176) 1112 195.1 1.8e-50


>>CCDS744.1 DR1 gene_id:1810|Hs108|chr1                   (176 aa)
 initn: 1112 init1: 1112 opt: 1112  Z-score: 1019.5  bits: 195.1 E(32554): 1.8e-50
Smith-Waterman score: 1112; 100.0% identity (100.0% similar) in 176 aa overlap (1-176:1-176)

               10        20        30        40        50        60
pF1KB3 MASSSGNDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MASSSGNDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 SEKKTISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLGIPEEELLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SEKKTISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLGIPEEELLR
               70        80        90       100       110       120

              130       140       150       160       170      
pF1KB3 QQQELFAKARQQQAELAQQEWLQMQQAAQQAQLAAASASASNQAGSSQDEEDDDDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QQQELFAKARQQQAELAQQEWLQMQQAAQQAQLAAASASASNQAGSSQDEEDDDDI
              130       140       150       160       170      




176 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 13:17:17 2016 done: Thu Nov  3 13:17:17 2016
 Total Scan time:  2.070 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]