FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3456, 359 aa
  1>>>pF1KB3456 359 - 359 aa - 359 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0391+/-0.000901; mu= 17.1725+/- 0.054
 mean_var=55.8634+/-11.133, 0's: 0 Z-trim(104.1): 20  B-trim: 0 in 0/47
 Lambda= 0.171597
 statistics sampled from 7751 (7754) to 7751 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.623), E-opt: 0.2 (0.238), width:  16
 Scan time:  2.190

The best scores are:                                      opt bits E(32554)
CCDS7493.1 SCD gene_id:6319|Hs108|chr10            ( 359) 2466 618.8 2.3e-177
CCDS34024.1 SCD5 gene_id:79966|Hs108|chr4          ( 330) 1382 350.4 1.3e-96
CCDS3595.1 SCD5 gene_id:79966|Hs108|chr4           ( 256)  731 189.2 3.3e-48


>>CCDS7493.1 SCD gene_id:6319|Hs108|chr10                 (359 aa)
 initn: 2466 init1: 2466 opt: 2466  Z-score: 3297.9  bits: 618.8 E(32554): 2.3e-177
Smith-Waterman score: 2466; 99.7% identity (100.0% similar) in 359 aa overlap (1-359:1-359)

               10        20        30        40        50        60
pF1KB3 MPAHLLQDDISSSYTTTTTITAPPSRVLQNGGDKLETMPLYLEDDIRPDIKDDIYDPTYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MPAHLLQDDISSSYTTTTTITAPPSRVLQNGGDKLETMPLYLEDDIRPDIKDDIYDPTYK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 DKEGPSPKVEYVWRNIILMSLLHLGALYGITLIPTCKFYTWLWGVFYYFVSALGITAGAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 DKEGPSPKVEYVWRNIILMSLLHLGALYGITLIPTCKFYTWLWGVFYYFVSALGITAGAH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 RLWSHRSYKARLPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RLWSHRSYKARLPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 HVGWLLVRKHPAVKEKGSTLDLSDLEAEKLVMFQRRYYKPGLLLMCFILPTLVPWYFWGE
       :::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
CCDS74 HVGWLLVRKHPAVKEKGSTLDLSDLEAEKLVMFQRRYYKPGLLMMCFILPTLVPWYFWGE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 TFQNSVFVATFLRYAVVLNATWLVNSAAHLFGYRPYDKNISPRENILVSLGAVGEGFHNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TFQNSVFVATFLRYAVVLNATWLVNSAAHLFGYRPYDKNISPRENILVSLGAVGEGFHNY
              250       260       270       280       290       300

              310       320       330       340       350         
pF1KB3 HHSFPYDYSASEYRWHINFTTFFIDCMAALGLAYDRKKVSKAAILARIKRTGDGNYKSG
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 HHSFPYDYSASEYRWHINFTTFFIDCMAALGLAYDRKKVSKAAILARIKRTGDGNYKSG
              310       320       330       340       350         

>>CCDS34024.1 SCD5 gene_id:79966|Hs108|chr4               (330 aa)
 initn: 1401 init1: 1381 opt: 1382  Z-score: 1848.1  bits: 350.4 E(32554): 1.3e-96
Smith-Waterman score: 1382; 61.0% identity (82.9% similar) in 315 aa overlap (49-355:15-329)

       20        30        40        50        60                70
pF1KB3 TITAPPSRVLQNGGDKLETMPLYLEDDIRPDIKDDIYDPTYKDKEGPSP--------KVE
                                     : :..:     ... : .:        . .
CCDS34                 MPGPATDAGKIPFCDAKEEIRAGLESSEGGGGPERPGARGQRQN
                               10        20        30        40    

               80        90       100       110       120       130
pF1KB3 YVWRNIILMSLLHLGALYGITLIPTCKFYTWLWGVFYYFVSALGITAGAHRLWSHRSYKA
        ::::..:::::::::.:...:::  :  : ::. : ....:::.:::::::::::::.:
CCDS34 IVWRNVVLMSLLHLGAVYSLVLIPKAKPLTLLWAYFCFLLAALGVTAGAHRLWSHRSYRA
           50        60        70        80        90       100    

              140       150       160       170       180       190
pF1KB3 RLPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKH
       .::::.:: .::.::::::..::.::::::::.::: :::::.::::::::.:::.::::
CCDS34 KLPLRIFLAVANSMAFQNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLFVRKH
          110       120       130       140       150       160    

              200       210       220       230       240       250
pF1KB3 PAVKEKGSTLDLSDLEAEKLVMFQRRYYKPGLLLMCFILPTLVPWYFWGETFQNSVFVAT
         : :::  ::..:: :. .: .::.::: ...::::..:::::::.:::.. :: :.:.
CCDS34 RDVIEKGRKLDVTDLLADPVVRIQRKYYKISVVLMCFVVPTLVPWYIWGESLWNSYFLAS
          170       180       190       200       210       220    

              260       270       280       290       300       310
pF1KB3 FLRYAVVLNATWLVNSAAHLFGYRPYDKNISPRENILVSLGAVGEGFHNYHHSFPYDYSA
       .:::.. :: .::::::::..: :::::.::::.: ::.:::.:::::::::.::.::::
CCDS34 ILRYTISLNISWLVNSAAHMYGNRPYDKHISPRQNPLVALGAIGEGFHNYHHTFPFDYSA
          230       240       250       260       270       280    

              320       330       340       350         
pF1KB3 SEYRWHINFTTFFIDCMAALGLAYDRKKVSKAAILARIKRTGDGNYKSG
       ::.  ..: ::.::: :  :::: :::...:  : ::  ::::..    
CCDS34 SEFGLNFNPTTWFIDFMCWLGLATDRKRATKPMIEARKARTGDSSA   
          290       300       310       320       330   

>>CCDS3595.1 SCD5 gene_id:79966|Hs108|chr4                (256 aa)
 initn: 730 init1: 730 opt: 731  Z-score: 978.9  bits: 189.2 E(32554): 3.3e-48
Smith-Waterman score: 731; 58.9% identity (80.0% similar) in 175 aa overlap (49-215:15-189)

       20        30        40        50        60                70
pF1KB3 TITAPPSRVLQNGGDKLETMPLYLEDDIRPDIKDDIYDPTYKDKEGPSP--------KVE
                                     : :..:     ... : .:        . .
CCDS35                 MPGPATDAGKIPFCDAKEEIRAGLESSEGGGGPERPGARGQRQN
                               10        20        30        40    

               80        90       100       110       120       130
pF1KB3 YVWRNIILMSLLHLGALYGITLIPTCKFYTWLWGVFYYFVSALGITAGAHRLWSHRSYKA
        ::::..:::::::::.:...:::  :  : ::. : ....:::.:::::::::::::.:
CCDS35 IVWRNVVLMSLLHLGAVYSLVLIPKAKPLTLLWAYFCFLLAALGVTAGAHRLWSHRSYRA
           50        60        70        80        90       100    

              140       150       160       170       180       190
pF1KB3 RLPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKH
       .::::.:: .::.::::::..::.::::::::.::: :::::.::::::::.:::.::::
CCDS35 KLPLRIFLAVANSMAFQNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLFVRKH
          110       120       130       140       150       160    

              200       210       220       230       240       250
pF1KB3 PAVKEKGSTLDLSDLEAEKLVMFQRRYYKPGLLLMCFILPTLVPWYFWGETFQNSVFVAT
         : :::  ::..:: :. .: .::                                   
CCDS35 RDVIEKGRKLDVTDLLADPVVRIQRNTQHIQKEGRALNQEAACEMLREWHQGHILKVTLP
          170       180       190       200       210       220    




359 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:07:00 2016 done: Sat Nov  5 05:07:01 2016
 Total Scan time:  2.190 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]