Result of FASTA (ccds) for
pF1KB3455
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3455, 160 aa
1>>>pF1KB3455 160 - 160 aa - 160 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8467+/-0.0008; mu= 6.9003+/- 0.049
mean_var=138.1633+/-28.140, 0's: 0 Z-trim(112.2): 34 B-trim: 24 in 1/52
Lambda= 0.109113
statistics sampled from 12961 (12994) to 12961 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.399), width: 16
Scan time: 2.000
The best scores are: opt bits E(32554)
CCDS9771.1 MAX gene_id:4149|Hs108|chr14 ( 160) 1032 172.7 8.6e-44
CCDS9772.1 MAX gene_id:4149|Hs108|chr14 ( 151) 909 153.3 5.5e-38
CCDS41965.1 MAX gene_id:4149|Hs108|chr14 ( 103) 648 112.1 9.7e-26
CCDS9770.1 MAX gene_id:4149|Hs108|chr14 ( 83) 390 71.4 1.4e-13
CCDS9774.1 MAX gene_id:4149|Hs108|chr14 ( 96) 382 70.2 3.7e-13
CCDS81813.1 MAX gene_id:4149|Hs108|chr14 ( 97) 382 70.2 3.7e-13
>>CCDS9771.1 MAX gene_id:4149|Hs108|chr14 (160 aa)
initn: 1032 init1: 1032 opt: 1032 Z-score: 899.7 bits: 172.7 E(32554): 8.6e-44
Smith-Waterman score: 1032; 100.0% identity (100.0% similar) in 160 aa overlap (1-160:1-160)
10 20 30 40 50 60
pF1KB3 MSDNDDIEVESDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MSDNDDIEVESDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 AQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALEKARSSAQLQTNYPSSDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 AQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALEKARSSAQLQTNYPSSDN
70 80 90 100 110 120
130 140 150 160
pF1KB3 SLYTNAKGSTISAFDGGSDSSSESEPEEPQSRKKLRMEAS
::::::::::::::::::::::::::::::::::::::::
CCDS97 SLYTNAKGSTISAFDGGSDSSSESEPEEPQSRKKLRMEAS
130 140 150 160
>>CCDS9772.1 MAX gene_id:4149|Hs108|chr14 (151 aa)
initn: 909 init1: 909 opt: 909 Z-score: 795.4 bits: 153.3 E(32554): 5.5e-38
Smith-Waterman score: 943; 94.4% identity (94.4% similar) in 160 aa overlap (1-160:1-151)
10 20 30 40 50 60
pF1KB3 MSDNDDIEVESDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASR
:::::::::::: :::::::::::::::::::::::::::::::::::::::
CCDS97 MSDNDDIEVESD---------ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASR
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 AQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALEKARSSAQLQTNYPSSDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 AQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALEKARSSAQLQTNYPSSDN
60 70 80 90 100 110
130 140 150 160
pF1KB3 SLYTNAKGSTISAFDGGSDSSSESEPEEPQSRKKLRMEAS
::::::::::::::::::::::::::::::::::::::::
CCDS97 SLYTNAKGSTISAFDGGSDSSSESEPEEPQSRKKLRMEAS
120 130 140 150
>>CCDS41965.1 MAX gene_id:4149|Hs108|chr14 (103 aa)
initn: 648 init1: 648 opt: 648 Z-score: 575.6 bits: 112.1 E(32554): 9.7e-26
Smith-Waterman score: 648; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:1-98)
10 20 30 40 50 60
pF1KB3 MSDNDDIEVESDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MSDNDDIEVESDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 AQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALEKARSSAQLQTNYPSSDN
::::::::::::::::::::::::::::::::::::::
CCDS41 AQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQGESES
70 80 90 100
130 140 150 160
pF1KB3 SLYTNAKGSTISAFDGGSDSSSESEPEEPQSRKKLRMEAS
>>CCDS9770.1 MAX gene_id:4149|Hs108|chr14 (83 aa)
initn: 390 init1: 390 opt: 390 Z-score: 357.3 bits: 71.4 E(32554): 1.4e-13
Smith-Waterman score: 390; 90.5% identity (98.4% similar) in 63 aa overlap (1-63:1-63)
10 20 30 40 50 60
pF1KB3 MSDNDDIEVESDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::...
CCDS97 MSDNDDIEVESDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKGTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 AQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALEKARSSAQLQTNYPSSDN
..
CCDS97 MKLTLPPVFPYEHLPFPTVFCHG
70 80
>>CCDS9774.1 MAX gene_id:4149|Hs108|chr14 (96 aa)
initn: 394 init1: 382 opt: 382 Z-score: 349.7 bits: 70.2 E(32554): 3.7e-13
Smith-Waterman score: 382; 100.0% identity (100.0% similar) in 57 aa overlap (1-57:1-57)
10 20 30 40 50 60
pF1KB3 MSDNDDIEVESDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MSDNDDIEVESDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKLYF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 AQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALEKARSSAQLQTNYPSSDN
CCDS97 LFWKLCTPVLHRQSLMQKCHTFISSYQVHKKKECKI
70 80 90
>>CCDS81813.1 MAX gene_id:4149|Hs108|chr14 (97 aa)
initn: 382 init1: 382 opt: 382 Z-score: 349.6 bits: 70.2 E(32554): 3.7e-13
Smith-Waterman score: 382; 93.8% identity (98.5% similar) in 65 aa overlap (96-160:33-97)
70 80 90 100 110 120
pF1KB3 KATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALEKARSSAQLQTNYPSSDNSLYTN
... ::::::::::::::::::::::::::
CCDS81 FWSSKGKARADQVLCSWGIHFSSSLMEDASKRKFRALEKARSSAQLQTNYPSSDNSLYTN
10 20 30 40 50 60
130 140 150 160
pF1KB3 AKGSTISAFDGGSDSSSESEPEEPQSRKKLRMEAS
:::::::::::::::::::::::::::::::::::
CCDS81 AKGSTISAFDGGSDSSSESEPEEPQSRKKLRMEAS
70 80 90
160 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:29:50 2016 done: Fri Nov 4 02:29:50 2016
Total Scan time: 2.000 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]