FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3452, 217 aa
  1>>>pF1KB3452 217 - 217 aa - 217 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3802+/-0.000375; mu= 7.4960+/- 0.023
 mean_var=69.6631+/-13.738, 0's: 0 Z-trim(112.5): 14  B-trim: 0 in 0/54
 Lambda= 0.153664
 statistics sampled from 21426 (21429) to 21426 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.251), width:  16
 Scan time:  6.110

The best scores are:                                      opt bits E(85289)
NP_009035 (OMIM: 615660) 60S ribosomal protein L10 ( 217) 1400 319.4 2.8e-87
XP_016866389 (OMIM: 615660) PREDICTED: 60S ribosom ( 133)  841 195.5 3.5e-50
NP_056474 (OMIM: 615874) ribosomal L1 domain-conta ( 490)  162 45.0 0.00026


>>NP_009035 (OMIM: 615660) 60S ribosomal protein L10a [H  (217 aa)
 initn: 1400 init1: 1400 opt: 1400  Z-score: 1688.0  bits: 319.4 E(85289): 2.8e-87
Smith-Waterman score: 1400; 100.0% identity (100.0% similar) in 217 aa overlap (1-217:1-217)

               10        20        30        40        50        60
pF1KB3 MSSKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MSSKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 PKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 PKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 PRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 PRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELV
              130       140       150       160       170       180

              190       200       210       
pF1KB3 YNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY
       :::::::::::::::::::::::::::::::::::::
NP_009 YNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY
              190       200       210       

>>XP_016866389 (OMIM: 615660) PREDICTED: 60S ribosomal p  (133 aa)
 initn: 841 init1: 841 opt: 841  Z-score: 1022.0  bits: 195.5 E(85289): 3.5e-50
Smith-Waterman score: 841; 100.0% identity (100.0% similar) in 133 aa overlap (85-217:1-133)

           60        70        80        90       100       110    
pF1KB3 LKSTPRPKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASE
                                     ::::::::::::::::::::::::::::::
XP_016                               MDIEALKKLNKNKKLVKKLAKKYDAFLASE
                                             10        20        30

          120       130       140       150       160       170    
pF1KB3 SLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKM
               40        50        60        70        80        90

          180       190       200       210       
pF1KB3 TDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY
       :::::::::::::::::::::::::::::::::::::::::::
XP_016 TDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY
              100       110       120       130   

>>NP_056474 (OMIM: 615874) ribosomal L1 domain-containin  (490 aa)
 initn:  62 init1:  62 opt: 162  Z-score: 198.5  bits: 45.0 E(85289): 0.00026
Smith-Waterman score: 162; 24.6% identity (61.9% similar) in 126 aa overlap (85-208:130-255)

           60        70        80        90       100       110    
pF1KB3 LKSTPRPKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASE
                                     .....:::  :. .   .: ...: ::.. 
NP_056 KDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKKEYKSYEAKLRLLSSFDFFLTDA
     100       110       120       130       140       150         

          120       130        140        150       160       170  
pF1KB3 SLIKQIPRILGPGLNKAGKFP-SLLTHNENMVAKV-DEVKSTIKFQMKKVLCLAVAVGHV
        . . .: ..:  . .  : : :.   ..:.  .. : . .:.    :.  : :. .:::
NP_056 RIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDCIGGTVLNISKSGSCSAIRIGHV
     160       170       180       190       200       210         

            180       190       200       210                      
pF1KB3 KMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY               
        :  .... ::  ... :   : ..:..:. :..:.                        
NP_056 GMQIEHIIENIVAVTKGLSEKLPEKWESVKLLFVKTEKSAALPIFSSFVSNWDEATKRSL
     220       230       240       250       260       270         

NP_056 LNKKKKEARRKRRERNFEKQKERKKKRQQARKTASVLSKDDVAPESGDTTVKKPESKKEQ
     280       290       300       310       320       330         




217 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:06:27 2016 done: Sat Nov  5 05:06:28 2016
 Total Scan time:  6.110 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]