FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3451, 264 aa
  1>>>pF1KB3451 264 - 264 aa - 264 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1292+/-0.000414; mu= 16.2925+/- 0.026
 mean_var=72.8992+/-14.554, 0's: 0 Z-trim(111.1): 18  B-trim: 225 in 1/50
 Lambda= 0.150215
 statistics sampled from 19565 (19579) to 19565 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.597), E-opt: 0.2 (0.23), width:  16
 Scan time:  4.870

The best scores are:                                      opt bits E(85289)
NP_000997 (OMIM: 180478) 40S ribosomal protein S3a ( 264) 1735 385.3 6.1e-107
NP_001254628 (OMIM: 180478) 40S ribosomal protein  (  58)  361 87.0 8.2e-18


>>NP_000997 (OMIM: 180478) 40S ribosomal protein S3a iso  (264 aa)
 initn: 1735 init1: 1735 opt: 1735  Z-score: 2041.0  bits: 385.3 E(85289): 6.1e-107
Smith-Waterman score: 1735; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264)

               10        20        30        40        50        60
pF1KB3 MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 GLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 IEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 IEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTND
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 LKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGK
              190       200       210       220       230       240

              250       260    
pF1KB3 ATGDETGAKVERADGYEPPVQESV
       ::::::::::::::::::::::::
NP_000 ATGDETGAKVERADGYEPPVQESV
              250       260    

>>NP_001254628 (OMIM: 180478) 40S ribosomal protein S3a   (58 aa)
 initn: 373 init1: 361 opt: 361  Z-score: 440.8  bits: 87.0 E(85289): 8.2e-18
Smith-Waterman score: 361; 100.0% identity (100.0% similar) in 55 aa overlap (1-55:1-55)

               10        20        30        40        50        60
pF1KB3 MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::     
NP_001 MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTNND  
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KB3 GLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTM




264 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:29:03 2016 done: Fri Nov  4 02:29:04 2016
 Total Scan time:  4.870 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]