FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3451, 264 aa
  1>>>pF1KB3451 264 - 264 aa - 264 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2090+/-0.000937; mu= 15.6674+/- 0.056
 mean_var=68.7381+/-13.602, 0's: 0 Z-trim(104.3): 22  B-trim: 0 in 0/52
 Lambda= 0.154695
 statistics sampled from 7824 (7828) to 7824 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.61), E-opt: 0.2 (0.24), width:  16
 Scan time:  1.950

The best scores are:                                      opt bits E(32554)
CCDS3775.1 RPS3A gene_id:6189|Hs108|chr4           ( 264) 1735 396.2 1.2e-110


>>CCDS3775.1 RPS3A gene_id:6189|Hs108|chr4                (264 aa)
 initn: 1735 init1: 1735 opt: 1735  Z-score: 2099.9  bits: 396.2 E(32554): 1.2e-110
Smith-Waterman score: 1735; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264)

               10        20        30        40        50        60
pF1KB3 MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 GLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 GLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 IEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 IEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTND
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 LKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 LKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGK
              190       200       210       220       230       240

              250       260    
pF1KB3 ATGDETGAKVERADGYEPPVQESV
       ::::::::::::::::::::::::
CCDS37 ATGDETGAKVERADGYEPPVQESV
              250       260    




264 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:29:03 2016 done: Fri Nov  4 02:29:03 2016
 Total Scan time:  1.950 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]