FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3449, 199 aa
  1>>>pF1KB3449 199 - 199 aa - 199 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0834+/-0.000744; mu= 14.1655+/- 0.045
 mean_var=55.0630+/-10.929, 0's: 0 Z-trim(107.4): 12  B-trim: 100 in 1/49
 Lambda= 0.172840
 statistics sampled from 9552 (9559) to 9552 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.294), width:  16
 Scan time:  1.680

The best scores are:                                      opt bits E(32554)
CCDS522.1 PRDX1 gene_id:5052|Hs108|chr1            ( 199) 1362 347.3 3.8e-96
CCDS12281.1 PRDX2 gene_id:7001|Hs108|chr19         ( 198) 1101 282.2 1.5e-76
CCDS14206.1 PRDX4 gene_id:10549|Hs108|chrX         ( 271)  951 244.8 3.5e-65
CCDS7611.1 PRDX3 gene_id:10935|Hs108|chr10         ( 256)  876 226.1 1.4e-59


>>CCDS522.1 PRDX1 gene_id:5052|Hs108|chr1                 (199 aa)
 initn: 1362 init1: 1362 opt: 1362  Z-score: 1839.7  bits: 347.3 E(32554): 3.8e-96
Smith-Waterman score: 1362; 100.0% identity (100.0% similar) in 199 aa overlap (1-199:1-199)

               10        20        30        40        50        60
pF1KB3 MSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 DRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 DRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 ADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 ADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG
              130       140       150       160       170       180

              190         
pF1KB3 SDTIKPDVQKSKEYFSKQK
       :::::::::::::::::::
CCDS52 SDTIKPDVQKSKEYFSKQK
              190         

>>CCDS12281.1 PRDX2 gene_id:7001|Hs108|chr19              (198 aa)
 initn: 1099 init1: 1002 opt: 1101  Z-score: 1488.0  bits: 282.2 E(32554): 1.5e-76
Smith-Waterman score: 1101; 77.8% identity (96.0% similar) in 198 aa overlap (1-198:1-197)

               10        20        30        40        50        60
pF1KB3 MSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFS
       :.::::.::.:::.::::::. :: ::...::::::::::.:::::::::::::::::::
CCDS12 MASGNARIGKPAPDFKATAVV-DGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFS
               10        20         30        40        50         

               70        80        90       100       110       120
pF1KB3 DRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLK
       .:::.:.::.:.:.:.::::.: ::::.:::.:.:::::.::::..:  : ...::::::
CCDS12 NRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLK
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB3 ADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG
       .::::..::::::: ::.:::::::::::::::::.::::::::.::.::::::::::::
CCDS12 TDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPG
     120       130       140       150       160       170         

              190         
pF1KB3 SDTIKPDVQKSKEYFSKQK
       ::::::.:. :::::::. 
CCDS12 SDTIKPNVDDSKEYFSKHN
     180       190        

>>CCDS14206.1 PRDX4 gene_id:10549|Hs108|chrX              (271 aa)
 initn: 966 init1: 905 opt: 951  Z-score: 1283.7  bits: 244.8 E(32554): 3.5e-65
Smith-Waterman score: 951; 70.3% identity (89.6% similar) in 192 aa overlap (6-197:79-269)

                                        10        20        30     
pF1KB3                          MSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYK
                                     :::..::: ...:::. ::.::...:.::.
CCDS14 EECHFYAGGQVYPGEASRVSVADHSLHLSKAKISKPAPYWEGTAVI-DGEFKELKLTDYR
       50        60        70        80        90        100       

          40        50        60        70        80        90     
pF1KB3 GKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQG
       :::.::::::::::::::::::::.:: :::...: .:.. ::::.: ::::.:::..::
CCDS14 GKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQG
       110       120       130       140       150       160       

         100       110       120       130       140       150     
pF1KB3 GLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDE
       ::::. :::.::  . :..::::   : : ..::::::::::::::::.:::::::::::
CCDS14 GLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDE
       170       180       190       200       210       220       

         160       170       180       190         
pF1KB3 TLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSKEYFSKQK
       :::::::::.::::::::::::::::.:: ::   . .::.:  
CCDS14 TLRLVQAFQYTDKHGEVCPAGWKPGSETIIPDPAGKLKYFDKLN
       230       240       250       260       270 

>>CCDS7611.1 PRDX3 gene_id:10935|Hs108|chr10              (256 aa)
 initn: 862 init1: 832 opt: 876  Z-score: 1183.0  bits: 226.1 E(32554): 1.4e-59
Smith-Waterman score: 876; 64.2% identity (87.9% similar) in 190 aa overlap (8-197:65-253)

                                      10        20        30       
pF1KB3                        MSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGK
                                     . . :: ::.:::. .:.:::.::.:.:::
CCDS76 CGRTSLTNLLCSGSSQAKLFSTSSSCHAPAVTQHAPYFKGTAVV-NGEFKDLSLDDFKGK
           40        50        60        70         80        90   

        40        50        60        70        80        90       
pF1KB3 YVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGL
       :.:.:::::::::::::::.::::.:.::. .::.:...:::::: ::::.:::.:.:::
CCDS76 YLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGL
           100       110       120       130       140       150   

       100       110       120       130       140       150       
pF1KB3 GPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETL
       : ::: :.::  . :..:::::    :...::::::: .:......::::::::::.:::
CCDS76 GHMNIALLSDLTKQISRDYGVLLEGSGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETL
           160       170       180       190       200       210   

       160       170       180       190          
pF1KB3 RLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSKEYFSKQK 
       :::.:::... :::::::.: : : ::::.   :::::.:   
CCDS76 RLVKAFQYVETHGEVCPANWTPDSPTIKPSPAASKEYFQKVNQ
           220       230       240       250      




199 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:27:43 2016 done: Fri Nov  4 02:27:43 2016
 Total Scan time:  1.680 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]