FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3448, 296 aa
  1>>>pF1KB3448 296 - 296 aa - 296 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2297+/-0.000418; mu= 11.4149+/- 0.026
 mean_var=88.0905+/-17.239, 0's: 0 Z-trim(111.7): 32  B-trim: 0 in 0/56
 Lambda= 0.136650
 statistics sampled from 20394 (20395) to 20394 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.6), E-opt: 0.2 (0.239), width:  16
 Scan time:  5.760

The best scores are:                                      opt bits E(85289)
NP_000960 (OMIM: 603634,612561) 60S ribosomal prot ( 297) 1946 393.7 2.3e-109


>>NP_000960 (OMIM: 603634,612561) 60S ribosomal protein   (297 aa)
 initn: 1599 init1: 1578 opt: 1946  Z-score: 2084.6  bits: 393.7 E(85289): 2.3e-109
Smith-Waterman score: 1946; 99.7% identity (99.7% similar) in 297 aa overlap (1-296:1-297)

               10        20        30        40        50        60
pF1KB3 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 GQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF
              130       140       150       160       170       180

              190       200       210       220       230          
pF1KB3 PGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDM-EEMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
NP_000 PGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMY
              190       200       210       220       230       240

     240       250       260       270       280       290      
pF1KB3 KKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAES
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAES
              250       260       270       280       290       




296 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:27:07 2016 done: Fri Nov  4 02:27:08 2016
 Total Scan time:  5.760 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]