FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3446, 295 aa
  1>>>pF1KB3446 295 - 295 aa - 295 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3485+/-0.000348; mu= 16.0006+/- 0.022
 mean_var=75.6990+/-15.234, 0's: 0 Z-trim(114.5): 9  B-trim: 41 in 2/52
 Lambda= 0.147411
 statistics sampled from 24384 (24389) to 24384 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.286), width:  16
 Scan time:  5.040

The best scores are:                                      opt bits E(85289)
NP_002286 (OMIM: 150370,271400) 40S ribosomal prot ( 295) 1980 430.3 2.2e-120
NP_001291217 (OMIM: 150370,271400) 40S ribosomal p ( 300) 1960 426.0 4.3e-119


>>NP_002286 (OMIM: 150370,271400) 40S ribosomal protein   (295 aa)
 initn: 1980 init1: 1980 opt: 1980  Z-score: 2282.1  bits: 430.3 E(85289): 2.2e-120
Smith-Waterman score: 1980; 100.0% identity (100.0% similar) in 295 aa overlap (1-295:1-295)

               10        20        30        40        50        60
pF1KB3 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA
              190       200       210       220       230       240

              250       260       270       280       290     
pF1KB3 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTDWS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTDWS
              250       260       270       280       290     

>>NP_001291217 (OMIM: 150370,271400) 40S ribosomal prote  (300 aa)
 initn: 1966 init1: 1451 opt: 1960  Z-score: 2259.0  bits: 426.0 E(85289): 4.3e-119
Smith-Waterman score: 1960; 98.3% identity (98.3% similar) in 300 aa overlap (1-295:1-300)

               10        20        30        40        50        60
pF1KB3 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
               10        20        30        40        50        60

               70        80             90       100       110     
pF1KB3 AARAIVAIENPADVSVISSRNTGQ-----RAVLKFAAATGATPIAGRFTPGTFTNQIQAA
       ::::::::::::::::::::::::     :::::::::::::::::::::::::::::::
NP_001 AARAIVAIENPADVSVISSRNTGQVCGTVRAVLKFAAATGATPIAGRFTPGTFTNQIQAA
               70        80        90       100       110       120

         120       130       140       150       160       170     
pF1KB3 FREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMW
              130       140       150       160       170       180

         180       190       200       210       220       230     
pF1KB3 WMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPA
              190       200       210       220       230       240

         240       250       260       270       280       290     
pF1KB3 PEFTATQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTDWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEFTATQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTDWS
              250       260       270       280       290       300




295 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:26:05 2016 done: Fri Nov  4 02:26:06 2016
 Total Scan time:  5.040 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]