FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3444, 140 aa
  1>>>pF1KB3444 140 - 140 aa - 140 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6233+/-0.000305; mu= 14.6333+/- 0.019
 mean_var=52.9209+/-10.761, 0's: 0 Z-trim(115.0): 2  B-trim: 0 in 0/53
 Lambda= 0.176303
 statistics sampled from 25171 (25172) to 25171 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.295), width:  16
 Scan time:  4.920

The best scores are:                                      opt bits E(85289)
NP_000969 (OMIM: 603662) 60S ribosomal protein L23 ( 140)  915 240.1 9.1e-64


>>NP_000969 (OMIM: 603662) 60S ribosomal protein L23 [Ho  (140 aa)
 initn: 915 init1: 915 opt: 915  Z-score: 1265.8  bits: 240.1 E(85289): 9.1e-64
Smith-Waterman score: 915; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KB3 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP
               70        80        90       100       110       120

              130       140
pF1KB3 VAKECADLWPRIASNAGSIA
       ::::::::::::::::::::
NP_000 VAKECADLWPRIASNAGSIA
              130       140




140 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:04:22 2016 done: Sat Nov  5 05:04:23 2016
 Total Scan time:  4.920 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]