FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3444, 140 aa
  1>>>pF1KB3444 140 - 140 aa - 140 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8330+/-0.00064; mu= 13.2530+/- 0.038
 mean_var=50.2072+/-10.179, 0's: 0 Z-trim(108.3): 14  B-trim: 0 in 0/51
 Lambda= 0.181005
 statistics sampled from 10148 (10151) to 10148 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.312), width:  16
 Scan time:  1.690

The best scores are:                                      opt bits E(32554)
CCDS11330.1 RPL23 gene_id:9349|Hs108|chr17         ( 140)  915 246.0 5.6e-66


>>CCDS11330.1 RPL23 gene_id:9349|Hs108|chr17              (140 aa)
 initn: 915 init1: 915 opt: 915  Z-score: 1298.0  bits: 246.0 E(32554): 5.6e-66
Smith-Waterman score: 915; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KB3 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP
               70        80        90       100       110       120

              130       140
pF1KB3 VAKECADLWPRIASNAGSIA
       ::::::::::::::::::::
CCDS11 VAKECADLWPRIASNAGSIA
              130       140




140 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:04:22 2016 done: Sat Nov  5 05:04:22 2016
 Total Scan time:  1.690 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]