Result of FASTA (omim) for
pF1KB3437
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3437, 219 aa
1>>>pF1KB3437 219 - 219 aa - 219 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.3440+/-0.000358; mu= 19.4433+/- 0.022
mean_var=66.7577+/-13.232, 0's: 0 Z-trim(113.8): 94 B-trim: 0 in 0/49
Lambda= 0.156972
statistics sampled from 23198 (23292) to 23198 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.635), E-opt: 0.2 (0.273), width: 16
Scan time: 5.710
The best scores are: opt bits E(85289)
NP_001035122 (OMIM: 151525) leukocyte surface anti ( 219) 1480 343.7 1.4e-94
NP_000551 (OMIM: 151525) leukocyte surface antigen ( 219) 1480 343.7 1.4e-94
NP_001307567 (OMIM: 151525) leukocyte surface anti ( 160) 714 170.1 1.9e-42
NP_001161792 (OMIM: 613137) tetraspanin-9 [Homo sa ( 239) 566 136.8 3e-32
NP_006666 (OMIM: 613137) tetraspanin-9 [Homo sapie ( 239) 566 136.8 3e-32
NP_001020408 (OMIM: 602644) tetraspanin-4 isoform ( 238) 504 122.7 5.1e-28
NP_001020409 (OMIM: 602644) tetraspanin-4 isoform ( 238) 504 122.7 5.1e-28
NP_003262 (OMIM: 602644) tetraspanin-4 isoform a [ ( 238) 504 122.7 5.1e-28
NP_001020407 (OMIM: 602644) tetraspanin-4 isoform ( 238) 504 122.7 5.1e-28
XP_005253159 (OMIM: 602644) PREDICTED: tetraspanin ( 238) 504 122.7 5.1e-28
NP_001020405 (OMIM: 602644) tetraspanin-4 isoform ( 238) 504 122.7 5.1e-28
NP_001020406 (OMIM: 602644) tetraspanin-4 isoform ( 238) 504 122.7 5.1e-28
XP_011518638 (OMIM: 602644) PREDICTED: tetraspanin ( 269) 423 104.4 1.8e-22
XP_006718286 (OMIM: 176807,600623) PREDICTED: CD82 ( 267) 403 99.9 4.2e-21
NP_002222 (OMIM: 176807,600623) CD82 antigen isofo ( 267) 403 99.9 4.2e-21
NP_001760 (OMIM: 143030) CD9 antigen isoform 1 [Ho ( 228) 364 91.0 1.7e-18
XP_011519215 (OMIM: 613137) PREDICTED: tetraspanin ( 175) 362 90.4 2e-18
XP_011519214 (OMIM: 613137) PREDICTED: tetraspanin ( 175) 362 90.4 2e-18
NP_620599 (OMIM: 179620,602243,609057) CD151 antig ( 253) 355 89.0 7.6e-18
NP_001034579 (OMIM: 179620,602243,609057) CD151 an ( 253) 355 89.0 7.6e-18
NP_004348 (OMIM: 179620,602243,609057) CD151 antig ( 253) 355 89.0 7.6e-18
NP_620598 (OMIM: 179620,602243,609057) CD151 antig ( 253) 355 89.0 7.6e-18
NP_004607 (OMIM: 600769) tetraspanin-8 [Homo sapie ( 237) 353 88.5 9.9e-18
XP_006719646 (OMIM: 600769) PREDICTED: tetraspanin ( 237) 353 88.5 9.9e-18
XP_016875402 (OMIM: 600769) PREDICTED: tetraspanin ( 237) 353 88.5 9.9e-18
NP_005716 (OMIM: 613133) tetraspanin-2 isoform 1 [ ( 221) 338 85.1 1e-16
NP_001765 (OMIM: 151523) leukocyte antigen CD37 is ( 281) 334 84.3 2.2e-16
XP_005259492 (OMIM: 151523) PREDICTED: leukocyte a ( 365) 334 84.4 2.6e-16
NP_005715 (OMIM: 613134) tetraspanin-3 isoform 1 [ ( 253) 329 83.1 4.5e-16
NP_005714 (OMIM: 613136) tetraspanin-5 [Homo sapie ( 268) 326 82.5 7.5e-16
NP_001020410 (OMIM: 602644) tetraspanin-4 isoform ( 174) 320 80.9 1.4e-15
XP_011518640 (OMIM: 602644) PREDICTED: tetraspanin ( 174) 320 80.9 1.4e-15
XP_011518639 (OMIM: 602644) PREDICTED: tetraspanin ( 174) 320 80.9 1.4e-15
XP_011518643 (OMIM: 602644) PREDICTED: tetraspanin ( 174) 320 80.9 1.4e-15
XP_011518642 (OMIM: 602644) PREDICTED: tetraspanin ( 174) 320 80.9 1.4e-15
XP_006716023 (OMIM: 610120) PREDICTED: tetraspanin ( 282) 316 80.2 3.7e-15
NP_005718 (OMIM: 613170) tetraspanin-1 [Homo sapie ( 241) 314 79.7 4.6e-15
XP_011538762 (OMIM: 613170) PREDICTED: tetraspanin ( 258) 314 79.7 4.8e-15
NP_848657 (OMIM: 610120) tetraspanin-33 [Homo sapi ( 283) 313 79.6 6e-15
NP_001771 (OMIM: 155740) CD63 antigen isoform A [H ( 238) 310 78.8 8.5e-15
NP_001244318 (OMIM: 155740) CD63 antigen isoform A ( 238) 310 78.8 8.5e-15
NP_001254627 (OMIM: 155740) CD63 antigen isoform A ( 238) 310 78.8 8.5e-15
NP_001244319 (OMIM: 155740) CD63 antigen isoform A ( 238) 310 78.8 8.5e-15
NP_001244320 (OMIM: 155740) CD63 antigen isoform A ( 238) 310 78.8 8.5e-15
NP_004347 (OMIM: 186845,613496) CD81 antigen isofo ( 236) 292 74.7 1.4e-13
NP_001295245 (OMIM: 613133) tetraspanin-2 isoform ( 193) 282 72.4 6e-13
XP_011518369 (OMIM: 176807,600623) PREDICTED: CD82 ( 236) 282 72.4 6.8e-13
NP_003261 (OMIM: 300191) tetraspanin-6 isoform a [ ( 245) 275 70.9 2.1e-12
NP_001244321 (OMIM: 155740) CD63 antigen isoform C ( 215) 273 70.4 2.6e-12
NP_001317241 (OMIM: 143030) CD9 antigen isform 2 [ ( 159) 262 67.7 1.2e-11
>>NP_001035122 (OMIM: 151525) leukocyte surface antigen (219 aa)
initn: 1480 init1: 1480 opt: 1480 Z-score: 1819.1 bits: 343.7 E(85289): 1.4e-94
Smith-Waterman score: 1480; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219)
10 20 30 40 50 60
pF1KB3 MGMSSLKLLKYVLFFFNLLFWICGCCILGFGIYLLIHNNFGVLFHNLPSLTLGNVFVIVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGMSSLKLLKYVLFFFNLLFWICGCCILGFGIYLLIHNNFGVLFHNLPSLTLGNVFVIVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 SIIMVVAFLGCMGSIKENKCLLMSFFILLLIILLAEVTLAILLFVYEQKLNEYVAKGLTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIIMVVAFLGCMGSIKENKCLLMSFFILLLIILLAEVTLAILLFVYEQKLNEYVAKGLTD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 SIHRYHSDNSTKAAWDSIQSFLQCCGINGTSDWTSGPPASCPSDRKVEGCYAKARLWFHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIHRYHSDNSTKAAWDSIQSFLQCCGINGTSDWTSGPPASCPSDRKVEGCYAKARLWFHS
130 140 150 160 170 180
190 200 210
pF1KB3 NFLYIGIITICVCVIEVLGMSFALTLNCQIDKTSQTIGL
:::::::::::::::::::::::::::::::::::::::
NP_001 NFLYIGIITICVCVIEVLGMSFALTLNCQIDKTSQTIGL
190 200 210
>>NP_000551 (OMIM: 151525) leukocyte surface antigen CD5 (219 aa)
initn: 1480 init1: 1480 opt: 1480 Z-score: 1819.1 bits: 343.7 E(85289): 1.4e-94
Smith-Waterman score: 1480; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219)
10 20 30 40 50 60
pF1KB3 MGMSSLKLLKYVLFFFNLLFWICGCCILGFGIYLLIHNNFGVLFHNLPSLTLGNVFVIVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MGMSSLKLLKYVLFFFNLLFWICGCCILGFGIYLLIHNNFGVLFHNLPSLTLGNVFVIVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 SIIMVVAFLGCMGSIKENKCLLMSFFILLLIILLAEVTLAILLFVYEQKLNEYVAKGLTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SIIMVVAFLGCMGSIKENKCLLMSFFILLLIILLAEVTLAILLFVYEQKLNEYVAKGLTD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 SIHRYHSDNSTKAAWDSIQSFLQCCGINGTSDWTSGPPASCPSDRKVEGCYAKARLWFHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SIHRYHSDNSTKAAWDSIQSFLQCCGINGTSDWTSGPPASCPSDRKVEGCYAKARLWFHS
130 140 150 160 170 180
190 200 210
pF1KB3 NFLYIGIITICVCVIEVLGMSFALTLNCQIDKTSQTIGL
:::::::::::::::::::::::::::::::::::::::
NP_000 NFLYIGIITICVCVIEVLGMSFALTLNCQIDKTSQTIGL
190 200 210
>>NP_001307567 (OMIM: 151525) leukocyte surface antigen (160 aa)
initn: 714 init1: 714 opt: 714 Z-score: 883.2 bits: 170.1 E(85289): 1.9e-42
Smith-Waterman score: 933; 73.1% identity (73.1% similar) in 219 aa overlap (1-219:1-160)
10 20 30 40 50 60
pF1KB3 MGMSSLKLLKYVLFFFNLLFWICGCCILGFGIYLLIHNNFGVLFHNLPSLTLGNVFVIVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGMSSLKLLKYVLFFFNLLFWICGCCILGFGIYLLIHNNFGVLFHNLPSLTLGNVFVIVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 SIIMVVAFLGCMGSIKENKCLLMSFFILLLIILLAEVTLAILLFVYEQKLNEYVAKGLTD
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIIMVVAFLGCMGSIKENKCLLMSFFILLLIILLAEVTLAILLFVYEQK-----------
70 80 90 100
130 140 150 160 170 180
pF1KB3 SIHRYHSDNSTKAAWDSIQSFLQCCGINGTSDWTSGPPASCPSDRKVEGCYAKARLWFHS
::::::::::::
NP_001 ------------------------------------------------GCYAKARLWFHS
110 120
190 200 210
pF1KB3 NFLYIGIITICVCVIEVLGMSFALTLNCQIDKTSQTIGL
:::::::::::::::::::::::::::::::::::::::
NP_001 NFLYIGIITICVCVIEVLGMSFALTLNCQIDKTSQTIGL
130 140 150 160
>>NP_001161792 (OMIM: 613137) tetraspanin-9 [Homo sapien (239 aa)
initn: 606 init1: 334 opt: 566 Z-score: 699.9 bits: 136.8 E(85289): 3e-32
Smith-Waterman score: 666; 40.9% identity (71.9% similar) in 235 aa overlap (1-215:1-235)
10 20 30 40 50
pF1KB3 MGMSSLKLLKYVLFFFNLLFWICGCCILGFGIYLLI-HNNFGVLFHNLPSLTLGNVFVIV
:. . : :::..:.:::.::.::: .:: ::.: . ..::... ..:::. .:. . .
NP_001 MARGCLCCLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAANLVIAI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 GSIIMVVAFLGCMGSIKENKCLLMSFFILLLIILLAEVTLAILLFVYEQKLNEYVAKGLT
:.:.::..::::.:.::::::::.::::.::.:::::. : ::.::: .:.:: . : :
NP_001 GTIVMVTGFLGCLGAIKENKCLLLSFFIVLLVILLAELILLILFFVYMDKVNENAKKDLK
70 80 90 100 110 120
120 130 140 150 160
pF1KB3 DSIHRYHSDNST--KAAWDSIQSFLQCCGINGTSDW------TSGPPASCPSDRK-----
... ::..:.. : ::. ::. ..:::.. .:: .. : : . .
NP_001 EGLLLYHTENNVGLKNAWNIIQAEMRCCGVTDYTDWYPVLGENTVPDRCCMENSQGCGRN
130 140 150 160 170 180
170 180 190 200 210
pF1KB3 ------VEGCYAKARLWFHSNFLYIGIITICVCVIEVLGMSFALTLNCQIDKTSQTIGL
::: :...:: .: .: . .:. ....:::.:..:: .: .:..
NP_001 ATTPLWRTGCYEKVKMWFDDNKHVLGTVGMCILIMQILGMAFSMTLFQHIHRTGKKYDA
190 200 210 220 230
>>NP_006666 (OMIM: 613137) tetraspanin-9 [Homo sapiens] (239 aa)
initn: 606 init1: 334 opt: 566 Z-score: 699.9 bits: 136.8 E(85289): 3e-32
Smith-Waterman score: 666; 40.9% identity (71.9% similar) in 235 aa overlap (1-215:1-235)
10 20 30 40 50
pF1KB3 MGMSSLKLLKYVLFFFNLLFWICGCCILGFGIYLLI-HNNFGVLFHNLPSLTLGNVFVIV
:. . : :::..:.:::.::.::: .:: ::.: . ..::... ..:::. .:. . .
NP_006 MARGCLCCLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAANLVIAI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 GSIIMVVAFLGCMGSIKENKCLLMSFFILLLIILLAEVTLAILLFVYEQKLNEYVAKGLT
:.:.::..::::.:.::::::::.::::.::.:::::. : ::.::: .:.:: . : :
NP_006 GTIVMVTGFLGCLGAIKENKCLLLSFFIVLLVILLAELILLILFFVYMDKVNENAKKDLK
70 80 90 100 110 120
120 130 140 150 160
pF1KB3 DSIHRYHSDNST--KAAWDSIQSFLQCCGINGTSDW------TSGPPASCPSDRK-----
... ::..:.. : ::. ::. ..:::.. .:: .. : : . .
NP_006 EGLLLYHTENNVGLKNAWNIIQAEMRCCGVTDYTDWYPVLGENTVPDRCCMENSQGCGRN
130 140 150 160 170 180
170 180 190 200 210
pF1KB3 ------VEGCYAKARLWFHSNFLYIGIITICVCVIEVLGMSFALTLNCQIDKTSQTIGL
::: :...:: .: .: . .:. ....:::.:..:: .: .:..
NP_006 ATTPLWRTGCYEKVKMWFDDNKHVLGTVGMCILIMQILGMAFSMTLFQHIHRTGKKYDA
190 200 210 220 230
>>NP_001020408 (OMIM: 602644) tetraspanin-4 isoform a [H (238 aa)
initn: 640 init1: 301 opt: 504 Z-score: 624.1 bits: 122.7 E(85289): 5.1e-28
Smith-Waterman score: 616; 37.1% identity (73.3% similar) in 232 aa overlap (1-212:1-232)
10 20 30 40 50
pF1KB3 MGMSSLKLLKYVLFFFNLLFWICGCCILGFGIYLLI-HNNFGVLFHNLPSLTLGNVFVIV
:. . :. .::..: ::::::. :: .:: ::.: ...:..: ..:::. .:...:.
NP_001 MARACLQAVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATLSSSFPSLSAANLLIIT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 GSIIMVVAFLGCMGSIKENKCLLMSFFILLLIILLAEVTLAILLFVYEQKLNEYVAKGLT
:...:...:.::.:.::::::::..::.:::...: :.:.:::.:.: .:...:. . :
NP_001 GAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLK
70 80 90 100 110 120
120 130 140 150 160
pF1KB3 DSIHRYHSDNST--KAAWDSIQSFLQCCGINGTSDW-----TSGPPASC-----------
..: : ..... ::. ::. ..:::... .:: .. : ::
NP_001 KGLHLYGTQGNVGLTNAWSIIQTDFRCCGVSNYTDWFEVYNATRVPDSCCLEFSESCGLH
130 140 150 160 170 180
170 180 190 200 210
pF1KB3 -PSDRKVEGCYAKARLWFHSNFLYIGIITICVCVIEVLGMSFALTLNCQIDKTSQTIGL
:. :: ...:.. :.: .::. .:. ....::..::.:. ::. :
NP_001 APGTWWKAPCYETVKVWLQENLLAVGIFGLCTALVQILGLTFAMTMYCQVVKADTYCA
190 200 210 220 230
>>NP_001020409 (OMIM: 602644) tetraspanin-4 isoform a [H (238 aa)
initn: 640 init1: 301 opt: 504 Z-score: 624.1 bits: 122.7 E(85289): 5.1e-28
Smith-Waterman score: 616; 37.1% identity (73.3% similar) in 232 aa overlap (1-212:1-232)
10 20 30 40 50
pF1KB3 MGMSSLKLLKYVLFFFNLLFWICGCCILGFGIYLLI-HNNFGVLFHNLPSLTLGNVFVIV
:. . :. .::..: ::::::. :: .:: ::.: ...:..: ..:::. .:...:.
NP_001 MARACLQAVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATLSSSFPSLSAANLLIIT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 GSIIMVVAFLGCMGSIKENKCLLMSFFILLLIILLAEVTLAILLFVYEQKLNEYVAKGLT
:...:...:.::.:.::::::::..::.:::...: :.:.:::.:.: .:...:. . :
NP_001 GAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLK
70 80 90 100 110 120
120 130 140 150 160
pF1KB3 DSIHRYHSDNST--KAAWDSIQSFLQCCGINGTSDW-----TSGPPASC-----------
..: : ..... ::. ::. ..:::... .:: .. : ::
NP_001 KGLHLYGTQGNVGLTNAWSIIQTDFRCCGVSNYTDWFEVYNATRVPDSCCLEFSESCGLH
130 140 150 160 170 180
170 180 190 200 210
pF1KB3 -PSDRKVEGCYAKARLWFHSNFLYIGIITICVCVIEVLGMSFALTLNCQIDKTSQTIGL
:. :: ...:.. :.: .::. .:. ....::..::.:. ::. :
NP_001 APGTWWKAPCYETVKVWLQENLLAVGIFGLCTALVQILGLTFAMTMYCQVVKADTYCA
190 200 210 220 230
>>NP_003262 (OMIM: 602644) tetraspanin-4 isoform a [Homo (238 aa)
initn: 640 init1: 301 opt: 504 Z-score: 624.1 bits: 122.7 E(85289): 5.1e-28
Smith-Waterman score: 616; 37.1% identity (73.3% similar) in 232 aa overlap (1-212:1-232)
10 20 30 40 50
pF1KB3 MGMSSLKLLKYVLFFFNLLFWICGCCILGFGIYLLI-HNNFGVLFHNLPSLTLGNVFVIV
:. . :. .::..: ::::::. :: .:: ::.: ...:..: ..:::. .:...:.
NP_003 MARACLQAVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATLSSSFPSLSAANLLIIT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 GSIIMVVAFLGCMGSIKENKCLLMSFFILLLIILLAEVTLAILLFVYEQKLNEYVAKGLT
:...:...:.::.:.::::::::..::.:::...: :.:.:::.:.: .:...:. . :
NP_003 GAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLK
70 80 90 100 110 120
120 130 140 150 160
pF1KB3 DSIHRYHSDNST--KAAWDSIQSFLQCCGINGTSDW-----TSGPPASC-----------
..: : ..... ::. ::. ..:::... .:: .. : ::
NP_003 KGLHLYGTQGNVGLTNAWSIIQTDFRCCGVSNYTDWFEVYNATRVPDSCCLEFSESCGLH
130 140 150 160 170 180
170 180 190 200 210
pF1KB3 -PSDRKVEGCYAKARLWFHSNFLYIGIITICVCVIEVLGMSFALTLNCQIDKTSQTIGL
:. :: ...:.. :.: .::. .:. ....::..::.:. ::. :
NP_003 APGTWWKAPCYETVKVWLQENLLAVGIFGLCTALVQILGLTFAMTMYCQVVKADTYCA
190 200 210 220 230
>>NP_001020407 (OMIM: 602644) tetraspanin-4 isoform a [H (238 aa)
initn: 640 init1: 301 opt: 504 Z-score: 624.1 bits: 122.7 E(85289): 5.1e-28
Smith-Waterman score: 616; 37.1% identity (73.3% similar) in 232 aa overlap (1-212:1-232)
10 20 30 40 50
pF1KB3 MGMSSLKLLKYVLFFFNLLFWICGCCILGFGIYLLI-HNNFGVLFHNLPSLTLGNVFVIV
:. . :. .::..: ::::::. :: .:: ::.: ...:..: ..:::. .:...:.
NP_001 MARACLQAVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATLSSSFPSLSAANLLIIT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 GSIIMVVAFLGCMGSIKENKCLLMSFFILLLIILLAEVTLAILLFVYEQKLNEYVAKGLT
:...:...:.::.:.::::::::..::.:::...: :.:.:::.:.: .:...:. . :
NP_001 GAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLK
70 80 90 100 110 120
120 130 140 150 160
pF1KB3 DSIHRYHSDNST--KAAWDSIQSFLQCCGINGTSDW-----TSGPPASC-----------
..: : ..... ::. ::. ..:::... .:: .. : ::
NP_001 KGLHLYGTQGNVGLTNAWSIIQTDFRCCGVSNYTDWFEVYNATRVPDSCCLEFSESCGLH
130 140 150 160 170 180
170 180 190 200 210
pF1KB3 -PSDRKVEGCYAKARLWFHSNFLYIGIITICVCVIEVLGMSFALTLNCQIDKTSQTIGL
:. :: ...:.. :.: .::. .:. ....::..::.:. ::. :
NP_001 APGTWWKAPCYETVKVWLQENLLAVGIFGLCTALVQILGLTFAMTMYCQVVKADTYCA
190 200 210 220 230
>>XP_005253159 (OMIM: 602644) PREDICTED: tetraspanin-4 i (238 aa)
initn: 640 init1: 301 opt: 504 Z-score: 624.1 bits: 122.7 E(85289): 5.1e-28
Smith-Waterman score: 616; 37.1% identity (73.3% similar) in 232 aa overlap (1-212:1-232)
10 20 30 40 50
pF1KB3 MGMSSLKLLKYVLFFFNLLFWICGCCILGFGIYLLI-HNNFGVLFHNLPSLTLGNVFVIV
:. . :. .::..: ::::::. :: .:: ::.: ...:..: ..:::. .:...:.
XP_005 MARACLQAVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATLSSSFPSLSAANLLIIT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 GSIIMVVAFLGCMGSIKENKCLLMSFFILLLIILLAEVTLAILLFVYEQKLNEYVAKGLT
:...:...:.::.:.::::::::..::.:::...: :.:.:::.:.: .:...:. . :
XP_005 GAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLK
70 80 90 100 110 120
120 130 140 150 160
pF1KB3 DSIHRYHSDNST--KAAWDSIQSFLQCCGINGTSDW-----TSGPPASC-----------
..: : ..... ::. ::. ..:::... .:: .. : ::
XP_005 KGLHLYGTQGNVGLTNAWSIIQTDFRCCGVSNYTDWFEVYNATRVPDSCCLEFSESCGLH
130 140 150 160 170 180
170 180 190 200 210
pF1KB3 -PSDRKVEGCYAKARLWFHSNFLYIGIITICVCVIEVLGMSFALTLNCQIDKTSQTIGL
:. :: ...:.. :.: .::. .:. ....::..::.:. ::. :
XP_005 APGTWWKAPCYETVKVWLQENLLAVGIFGLCTALVQILGLTFAMTMYCQVVKADTYCA
190 200 210 220 230
219 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:02:09 2016 done: Sat Nov 5 05:02:10 2016
Total Scan time: 5.710 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]