Result of FASTA (omim) for
pF1KB3435
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3435, 406 aa
1>>>pF1KB3435 406 - 406 aa - 406 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3263+/-0.000511; mu= 17.2142+/- 0.031
mean_var=75.6987+/-15.406, 0's: 0 Z-trim(107.6): 190 B-trim: 164 in 1/51
Lambda= 0.147411
statistics sampled from 15446 (15643) to 15446 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.537), E-opt: 0.2 (0.183), width: 16
Scan time: 7.180
The best scores are: opt bits E(85289)
NP_001407 (OMIM: 602641) eukaryotic initiation fac ( 406) 2629 569.3 6.1e-162
NP_001958 (OMIM: 601102) eukaryotic initiation fac ( 407) 2426 526.1 6.1e-149
NP_001191439 (OMIM: 602641) eukaryotic initiation ( 347) 2155 468.4 1.2e-131
NP_055555 (OMIM: 268305,608546) eukaryotic initiat ( 411) 1791 391.0 2.7e-108
XP_011523824 (OMIM: 268305,608546) PREDICTED: euka ( 390) 1379 303.4 6.3e-82
NP_001244120 (OMIM: 600326) probable ATP-dependent ( 483) 943 210.7 6.1e-54
NP_004388 (OMIM: 600326) probable ATP-dependent RN ( 483) 943 210.7 6.1e-54
XP_005271474 (OMIM: 600326) PREDICTED: probable AT ( 483) 943 210.7 6.1e-54
NP_009173 (OMIM: 605812) ATP-dependent RNA helicas ( 479) 915 204.8 3.7e-52
XP_011521136 (OMIM: 605812) PREDICTED: ATP-depende ( 484) 915 204.8 3.8e-52
XP_011521134 (OMIM: 605812) PREDICTED: ATP-depende ( 539) 915 204.8 4.1e-52
XP_011541093 (OMIM: 607663) PREDICTED: ATP-depende ( 482) 893 200.1 9.6e-51
NP_037396 (OMIM: 607663) ATP-dependent RNA helicas ( 483) 893 200.1 9.6e-51
XP_011541092 (OMIM: 607663) PREDICTED: ATP-depende ( 486) 893 200.1 9.7e-51
NP_542165 (OMIM: 142560) spliceosome RNA helicase ( 428) 874 196.0 1.4e-49
NP_004631 (OMIM: 142560) spliceosome RNA helicase ( 428) 874 196.0 1.4e-49
XP_006721190 (OMIM: 605812) PREDICTED: ATP-depende ( 370) 852 191.3 3.3e-48
XP_016878379 (OMIM: 605812) PREDICTED: ATP-depende ( 370) 852 191.3 3.3e-48
NP_001244102 (OMIM: 605812) ATP-dependent RNA heli ( 370) 852 191.3 3.3e-48
NP_001244103 (OMIM: 605812) ATP-dependent RNA heli ( 370) 852 191.3 3.3e-48
NP_001014449 (OMIM: 605812) ATP-dependent RNA heli ( 370) 852 191.3 3.3e-48
NP_001317367 (OMIM: 607663) ATP-dependent RNA heli ( 369) 824 185.4 2e-46
NP_009135 (OMIM: 606168) probable ATP-dependent RN ( 824) 825 185.8 3.3e-46
NP_001014451 (OMIM: 605812) ATP-dependent RNA heli ( 448) 821 184.8 3.7e-46
NP_001244101 (OMIM: 605812) ATP-dependent RNA heli ( 453) 821 184.8 3.7e-46
XP_011521135 (OMIM: 605812) PREDICTED: ATP-depende ( 508) 821 184.8 4.1e-46
NP_001244104 (OMIM: 605812) ATP-dependent RNA heli ( 328) 737 166.8 6.9e-41
NP_060365 (OMIM: 616621) probable ATP-dependent RN ( 796) 722 163.9 1.3e-39
XP_016866492 (OMIM: 606286) PREDICTED: probable AT ( 439) 703 159.7 1.3e-38
XP_011534230 (OMIM: 606286) PREDICTED: probable AT ( 529) 703 159.7 1.5e-38
XP_011534229 (OMIM: 606286) PREDICTED: probable AT ( 529) 703 159.7 1.5e-38
XP_011534228 (OMIM: 606286) PREDICTED: probable AT ( 604) 703 159.8 1.7e-38
NP_061135 (OMIM: 606286) probable ATP-dependent RN ( 648) 703 159.8 1.8e-38
NP_057439 (OMIM: 615428) probable ATP-dependent RN ( 455) 701 159.3 1.8e-38
XP_016857920 (OMIM: 174300,615464) PREDICTED: prob ( 619) 692 157.4 8.6e-38
XP_016857921 (OMIM: 174300,615464) PREDICTED: prob ( 619) 692 157.4 8.6e-38
NP_001026895 (OMIM: 174300,615464) probable ATP-de ( 619) 692 157.4 8.6e-38
XP_011508337 (OMIM: 174300,615464) PREDICTED: prob ( 619) 692 157.4 8.6e-38
NP_004387 (OMIM: 180630) probable ATP-dependent RN ( 614) 672 153.2 1.6e-36
NP_001307525 (OMIM: 180630) probable ATP-dependent ( 614) 672 153.2 1.6e-36
NP_001307524 (OMIM: 180630) probable ATP-dependent ( 614) 672 153.2 1.6e-36
NP_001307526 (OMIM: 180630) probable ATP-dependent ( 614) 672 153.2 1.6e-36
NP_006377 (OMIM: 608469) probable ATP-dependent RN ( 729) 667 152.2 3.9e-36
NP_001091974 (OMIM: 608469) probable ATP-dependent ( 731) 667 152.2 3.9e-36
NP_076977 (OMIM: 611665) ATP-dependent RNA helicas ( 881) 664 151.6 7.1e-36
NP_001104792 (OMIM: 611665) ATP-dependent RNA heli ( 882) 664 151.6 7.1e-36
XP_011540947 (OMIM: 600326) PREDICTED: probable AT ( 434) 650 148.4 3.2e-35
XP_016879601 (OMIM: 613369) PREDICTED: ATP-depende ( 775) 621 142.4 3.6e-33
XP_006721720 (OMIM: 613369) PREDICTED: ATP-depende ( 938) 621 142.5 4.2e-33
NP_987095 (OMIM: 613369) ATP-dependent RNA helicas ( 938) 621 142.5 4.2e-33
>>NP_001407 (OMIM: 602641) eukaryotic initiation factor (406 aa)
initn: 2629 init1: 2629 opt: 2629 Z-score: 3028.3 bits: 569.3 E(85289): 6.1e-162
Smith-Waterman score: 2629; 100.0% identity (100.0% similar) in 406 aa overlap (1-406:1-406)
10 20 30 40 50 60
pF1KB3 MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRI
310 320 330 340 350 360
370 380 390 400
pF1KB3 GRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI
370 380 390 400
>>NP_001958 (OMIM: 601102) eukaryotic initiation factor (407 aa)
initn: 2418 init1: 2418 opt: 2426 Z-score: 2795.0 bits: 526.1 E(85289): 6.1e-149
Smith-Waterman score: 2426; 89.7% identity (98.0% similar) in 407 aa overlap (1-406:1-407)
10 20 30 40 50
pF1KB3 MSASQDSRSRDNG-PDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQ
::... . .:..: :.::.:.::::::::::::.::::::.:::::::::::::::::::
NP_001 MSGGSADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 QRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKV
::::.:::::::::::::::::::::::::::::.:...: :::::::::::::::::::
NP_001 QRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB3 VMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMF
..::::::::.::::::::::: :.:::: :::::.:::::::::::::::::::.::::
NP_001 ILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMF
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB3 VLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKE
::::::::::::::::::.::::::.. ::::::::::.:::::::::::::::::::::
NP_001 VLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKE
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB3 ELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTV
:::::::.:::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_001 ELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTV
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB3 SAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHR
::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHR
310 320 330 340 350 360
360 370 380 390 400
pF1KB3 IGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI
:::::::::::::::.::::::: ::::::::::..::::.::::::
NP_001 IGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI
370 380 390 400
>>NP_001191439 (OMIM: 602641) eukaryotic initiation fact (347 aa)
initn: 2176 init1: 2155 opt: 2155 Z-score: 2484.5 bits: 468.4 E(85289): 1.2e-131
Smith-Waterman score: 2155; 99.4% identity (100.0% similar) in 334 aa overlap (1-334:1-334)
10 20 30 40 50 60
pF1KB3 MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRI
::::::::::::::::::::::::::::::::..
NP_001 AMHGDMDQKERDVIMREFRSGSSRVLITTDLLGKLYPQNRSRWTVWP
310 320 330 340
370 380 390 400
pF1KB3 GRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI
>>NP_055555 (OMIM: 268305,608546) eukaryotic initiation (411 aa)
initn: 1782 init1: 1254 opt: 1791 Z-score: 2065.1 bits: 391.0 E(85289): 2.7e-108
Smith-Waterman score: 1791; 66.7% identity (86.7% similar) in 406 aa overlap (1-406:7-411)
10 20 30 40 50
pF1KB3 MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEK
:..: ..:.: . : :. ... .:: :.: :.::::::::::::
NP_055 MATTATMATSGSARKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 PSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQ
::::::::: ::: :::::.::::::::::.::.:: ...... ::::.::::::::
NP_055 PSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB3 QIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPK
:::: ..::::::...:::::::::: ...::.. . :...:::::::::. :: : .
NP_055 QIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY-GQHVVAGTPGRVFDMIRRRSLRTR
130 140 150 160 170
180 190 200 210 220 230
pF1KB3 YIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRI
:::.:::::::::..:::.::::... : :::::.:::.: ..::.:.::: :::::
NP_055 AIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRI
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB3 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA
:::..:::::::.::.. :::::::.:::::::.:::::::::: ::.::::::::::.
NP_055 LVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRE
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB3 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRE
.::::.::::: ::::. ::.:::::.:::::.::. :::.:: ::::.::::::.:::
NP_055 ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRE
300 310 320 330 340 350
360 370 380 390 400
pF1KB3 NYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI
:::::::.::.::::::::.: ..: : ::::: .:.:.:.:::.::::::
NP_055 LYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
360 370 380 390 400 410
>>XP_011523824 (OMIM: 268305,608546) PREDICTED: eukaryot (390 aa)
initn: 1673 init1: 1254 opt: 1379 Z-score: 1591.9 bits: 303.4 E(85289): 6.3e-82
Smith-Waterman score: 1645; 63.3% identity (82.3% similar) in 406 aa overlap (1-406:7-390)
10 20 30 40 50
pF1KB3 MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEK
:..: ..:.: . : :. ... .:: :.: :.::::::::::::
XP_011 MATTATMATSGSARKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 PSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQ
::::::::: ::: :::::.::::::::::.::.:: ... :.:
XP_011 PSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI-----QGL----------
70 80 90 100
120 130 140 150 160 170
pF1KB3 QIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPK
.::::::...:::::::::: ...::.. . :...:::::::::. :: : .
XP_011 ------LALGDYMNVQCHACIGGTNVGEDIRKLDY-GQHVVAGTPGRVFDMIRRRSLRTR
110 120 130 140 150
180 190 200 210 220 230
pF1KB3 YIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRI
:::.:::::::::..:::.::::... : :::::.:::.: ..::.:.::: :::::
XP_011 AIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRI
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB3 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA
:::..:::::::.::.. :::::::.:::::::.:::::::::: ::.::::::::::.
XP_011 LVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRE
220 230 240 250 260 270
300 310 320 330 340 350
pF1KB3 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRE
.::::.::::: ::::. ::.:::::.:::::.::. :::.:: ::::.::::::.:::
XP_011 ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRE
280 290 300 310 320 330
360 370 380 390 400
pF1KB3 NYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI
:::::::.::.::::::::.: ..: : ::::: .:.:.:.:::.::::::
XP_011 LYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
340 350 360 370 380 390
>>NP_001244120 (OMIM: 600326) probable ATP-dependent RNA (483 aa)
initn: 790 init1: 446 opt: 943 Z-score: 1089.5 bits: 210.7 E(85289): 6.1e-54
Smith-Waterman score: 943; 38.7% identity (74.2% similar) in 372 aa overlap (32-402:96-464)
10 20 30 40 50 60
pF1KB3 SASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQR
. :.:. :.. :: ::. .:.:::: ::..
NP_001 IKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEE
70 80 90 100 110 120
70 80 90 100 110 120
pF1KB3 AILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVM
.: ..: :..:.:..::::.... : .:....: ::.:..:::::: :.... .
NP_001 SIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICI
130 140 150 160 170 180
130 140 150 160 170 180
pF1KB3 ALGDYMG-ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV
.. .:: :. : ::::.: ....:. .. :....::::..:.... . ...:.:
NP_001 QVSKHMGGAKVMATTGGTNLRDDIMRLD-DTVHVVIATPGRILDLIKKGVAKVDHVQMIV
190 200 210 220 230 240
190 200 210 220 230 240
pF1KB3 LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE
:::::..::. : . . ::. : .: :..: :::.: .: . .. .. : .: . ::
NP_001 LDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLM-EE
250 260 270 280 290 300
250 260 270 280 290 300
pF1KB3 LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS
:::.:. :.: : :. :. : :. : :.:..:: :. ..:. :..:. ..
NP_001 LTLKGVTQYYAYVT-ERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCF
310 320 330 340 350 360
310 320 330 340 350 360
pF1KB3 AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRI
.:. : :..:. ....::.: : :. :::..::::.: :..:::.:.: :.:.:::
NP_001 YIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRI
370 380 390 400 410 420
370 380 390 400
pF1KB3 GRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI
::.::::. :.:::..: .:. .:..:: .: :. .: :.
NP_001 GRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEDEK
430 440 450 460 470 480
NP_001 P
>>NP_004388 (OMIM: 600326) probable ATP-dependent RNA he (483 aa)
initn: 790 init1: 446 opt: 943 Z-score: 1089.5 bits: 210.7 E(85289): 6.1e-54
Smith-Waterman score: 943; 38.7% identity (74.2% similar) in 372 aa overlap (32-402:96-464)
10 20 30 40 50 60
pF1KB3 SASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQR
. :.:. :.. :: ::. .:.:::: ::..
NP_004 IKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEE
70 80 90 100 110 120
70 80 90 100 110 120
pF1KB3 AILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVM
.: ..: :..:.:..::::.... : .:....: ::.:..:::::: :.... .
NP_004 SIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICI
130 140 150 160 170 180
130 140 150 160 170 180
pF1KB3 ALGDYMG-ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV
.. .:: :. : ::::.: ....:. .. :....::::..:.... . ...:.:
NP_004 QVSKHMGGAKVMATTGGTNLRDDIMRLD-DTVHVVIATPGRILDLIKKGVAKVDHVQMIV
190 200 210 220 230 240
190 200 210 220 230 240
pF1KB3 LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE
:::::..::. : . . ::. : .: :..: :::.: .: . .. .. : .: . ::
NP_004 LDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLM-EE
250 260 270 280 290 300
250 260 270 280 290 300
pF1KB3 LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS
:::.:. :.: : :. :. : :. : :.:..:: :. ..:. :..:. ..
NP_004 LTLKGVTQYYAYVT-ERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCF
310 320 330 340 350 360
310 320 330 340 350 360
pF1KB3 AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRI
.:. : :..:. ....::.: : :. :::..::::.: :..:::.:.: :.:.:::
NP_004 YIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRI
370 380 390 400 410 420
370 380 390 400
pF1KB3 GRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI
::.::::. :.:::..: .:. .:..:: .: :. .: :.
NP_004 GRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEDEK
430 440 450 460 470 480
NP_004 P
>>XP_005271474 (OMIM: 600326) PREDICTED: probable ATP-de (483 aa)
initn: 790 init1: 446 opt: 943 Z-score: 1089.5 bits: 210.7 E(85289): 6.1e-54
Smith-Waterman score: 943; 38.7% identity (74.2% similar) in 372 aa overlap (32-402:96-464)
10 20 30 40 50 60
pF1KB3 SASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQR
. :.:. :.. :: ::. .:.:::: ::..
XP_005 IKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEE
70 80 90 100 110 120
70 80 90 100 110 120
pF1KB3 AILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVM
.: ..: :..:.:..::::.... : .:....: ::.:..:::::: :.... .
XP_005 SIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICI
130 140 150 160 170 180
130 140 150 160 170 180
pF1KB3 ALGDYMG-ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV
.. .:: :. : ::::.: ....:. .. :....::::..:.... . ...:.:
XP_005 QVSKHMGGAKVMATTGGTNLRDDIMRLD-DTVHVVIATPGRILDLIKKGVAKVDHVQMIV
190 200 210 220 230 240
190 200 210 220 230 240
pF1KB3 LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE
:::::..::. : . . ::. : .: :..: :::.: .: . .. .. : .: . ::
XP_005 LDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLM-EE
250 260 270 280 290 300
250 260 270 280 290 300
pF1KB3 LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS
:::.:. :.: : :. :. : :. : :.:..:: :. ..:. :..:. ..
XP_005 LTLKGVTQYYAYVT-ERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCF
310 320 330 340 350 360
310 320 330 340 350 360
pF1KB3 AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRI
.:. : :..:. ....::.: : :. :::..::::.: :..:::.:.: :.:.:::
XP_005 YIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRI
370 380 390 400 410 420
370 380 390 400
pF1KB3 GRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI
::.::::. :.:::..: .:. .:..:: .: :. .: :.
XP_005 GRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEDEK
430 440 450 460 470 480
XP_005 P
>>NP_009173 (OMIM: 605812) ATP-dependent RNA helicase DD (479 aa)
initn: 644 init1: 423 opt: 915 Z-score: 1057.3 bits: 204.8 E(85289): 3.7e-52
Smith-Waterman score: 915; 40.4% identity (71.5% similar) in 389 aa overlap (31-406:91-474)
10 20 30 40 50 60
pF1KB3 MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ
: ::... :. .::.:.::.::..:: ::.
NP_009 LLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQE
70 80 90 100 110 120
70 80 90 100 110
pF1KB3 RAILPCIKG---YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQ
: :: . . ..:::.::::::::.:....:.:.: : : : :.:: ::: :
NP_009 NA-LPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTG
130 140 150 160 170
120 130 140 150 160 170
pF1KB3 KVVMALGDYMGASCHACIGGTNVRA-EVQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKY
::. .: .. : ::. .... : . .:..:::: :.: .. ....::
NP_009 KVIEQMGKFYPELKLA----YAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKK
180 190 200 210 220 230
180 190 200 210 220 230
pF1KB3 IKMFVLDEADEML-SRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRI
::.::::::: :. ..: .:: : . : : :..:.:::. ..: . ..: . :: :
NP_009 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVI
240 250 260 270 280 290
240 250 260 270 280 290
pF1KB3 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA
.:.:: ::. :.:.:. .. :...::.:: ..::.::.:: .::. ..::. ..
NP_009 KLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSK
300 310 320 330 340 350
300 310 320 330 340 350
pF1KB3 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNR-
. :. . :.: ..: .....:: :. .::.::.. ::::::.:::.:::.:::...
NP_009 EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD
360 370 380 390 400 410
360 370 380 390 400
pF1KB3 -----ENYIHRIGRGGRFGRKGVAINMV-TEEDKRTLRDIETFYNTSIEEMPLNVADLI
:.:.::::: ::::..:.:.::: .... : :. .: .::.. . : :
NP_009 GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIE
420 430 440 450 460 470
NP_009 KIAN
>>XP_011521136 (OMIM: 605812) PREDICTED: ATP-dependent R (484 aa)
initn: 644 init1: 423 opt: 915 Z-score: 1057.3 bits: 204.8 E(85289): 3.8e-52
Smith-Waterman score: 915; 40.4% identity (71.5% similar) in 389 aa overlap (31-406:96-479)
10 20 30 40 50 60
pF1KB3 MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ
: ::... :. .::.:.::.::..:: ::.
XP_011 LLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQE
70 80 90 100 110 120
70 80 90 100 110
pF1KB3 RAILPCIKG---YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQ
: :: . . ..:::.::::::::.:....:.:.: : : : :.:: ::: :
XP_011 NA-LPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTG
130 140 150 160 170 180
120 130 140 150 160 170
pF1KB3 KVVMALGDYMGASCHACIGGTNVRA-EVQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKY
::. .: .. : ::. .... : . .:..:::: :.: .. ....::
XP_011 KVIEQMGKFYPELKLA----YAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKK
190 200 210 220 230 240
180 190 200 210 220 230
pF1KB3 IKMFVLDEADEML-SRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRI
::.::::::: :. ..: .:: : . : : :..:.:::. ..: . ..: . :: :
XP_011 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVI
250 260 270 280 290 300
240 250 260 270 280 290
pF1KB3 LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA
.:.:: ::. :.:.:. .. :...::.:: ..::.::.:: .::. ..::. ..
XP_011 KLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSK
310 320 330 340 350 360
300 310 320 330 340 350
pF1KB3 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNR-
. :. . :.: ..: .....:: :. .::.::.. ::::::.:::.:::.:::...
XP_011 EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD
370 380 390 400 410 420
360 370 380 390 400
pF1KB3 -----ENYIHRIGRGGRFGRKGVAINMV-TEEDKRTLRDIETFYNTSIEEMPLNVADLI
:.:.::::: ::::..:.:.::: .... : :. .: .::.. . : :
XP_011 GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIE
430 440 450 460 470 480
XP_011 KIAN
406 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 20:59:25 2016 done: Thu Nov 3 20:59:26 2016
Total Scan time: 7.180 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]