Result of FASTA (omim) for
pF1KB3434
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3434, 323 aa
1>>>pF1KB3434 323 - 323 aa - 323 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6384+/-0.000274; mu= 12.0424+/- 0.017
mean_var=126.7481+/-24.515, 0's: 0 Z-trim(123.0): 19 B-trim: 0 in 0/59
Lambda= 0.113921
statistics sampled from 41988 (42009) to 41988 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.493), width: 16
Scan time: 9.250
The best scores are: opt bits E(85289)
NP_002966 (OMIM: 604713) C-type lectin domain fami ( 323) 2259 381.5 1.3e-105
NP_005743 (OMIM: 613588) C-type lectin domain fami ( 206) 223 46.7 4.8e-05
NP_001295323 (OMIM: 187520) tetranectin isoform 2 ( 160) 206 43.9 0.00028
NP_001231684 (OMIM: 613588) C-type lectin domain f ( 145) 205 43.7 0.00029
XP_016862605 (OMIM: 187520) PREDICTED: tetranectin ( 169) 206 43.9 0.00029
NP_003269 (OMIM: 187520) tetranectin isoform 1prec ( 202) 206 43.9 0.00033
XP_016862606 (OMIM: 187520) PREDICTED: tetranectin ( 209) 206 43.9 0.00034
>>NP_002966 (OMIM: 604713) C-type lectin domain family 1 (323 aa)
initn: 2259 init1: 2259 opt: 2259 Z-score: 2017.3 bits: 381.5 E(85289): 1.3e-105
Smith-Waterman score: 2259; 100.0% identity (100.0% similar) in 323 aa overlap (1-323:1-323)
10 20 30 40 50 60
pF1KB3 MQAAWLLGALVVPQLLGFGHGARGAEREWEGGWGGAQEEEREREALMLKHLQEALGLPAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MQAAWLLGALVVPQLLGFGHGARGAEREWEGGWGGAQEEEREREALMLKHLQEALGLPAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 RGDENPAGTVEGKEDWEMEEDQGEEEEEEATPTPSSGPSPSPTPEDIVTYILGRLAGLDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RGDENPAGTVEGKEDWEMEEDQGEEEEEEATPTPSSGPSPSPTPEDIVTYILGRLAGLDA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 GLHQLHVRLHALDTRVVELTQGLRQLRNAAGDTRDAVQALQEAQGRAEREHGRLEGCLKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GLHQLHVRLHALDTRVVELTQGLRQLRNAAGDTRDAVQALQEAQGRAEREHGRLEGCLKG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 LRLGHKCFLLSRDFEAQAAAQARCTARGGSLAQPADRQQMEALTRYLRAALAPYNWPVWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LRLGHKCFLLSRDFEAQAAAQARCTARGGSLAQPADRQQMEALTRYLRAALAPYNWPVWL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 GVHDRRAEGLYLFENGQRVSFFAWHRSPRPELGAQPSASPHPLSPDQPNGGTLENCVAQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GVHDRRAEGLYLFENGQRVSFFAWHRSPRPELGAQPSASPHPLSPDQPNGGTLENCVAQA
250 260 270 280 290 300
310 320
pF1KB3 SDDGSWWDHDCQRRLYYVCEFPF
:::::::::::::::::::::::
NP_002 SDDGSWWDHDCQRRLYYVCEFPF
310 320
>>NP_005743 (OMIM: 613588) C-type lectin domain family 3 (206 aa)
initn: 305 init1: 124 opt: 223 Z-score: 211.5 bits: 46.7 E(85289): 4.8e-05
Smith-Waterman score: 299; 31.1% identity (55.0% similar) in 180 aa overlap (144-321:44-202)
120 130 140 150 160 170
pF1KB3 RLAGLDAGLHQLHVRLHALDTRVVELTQGLRQLRNAAGDTRDAVQALQEAQGRAEREHGR
:..:. :: . .. : .. : .:
NP_005 GLVICILVITLLLDQTTSHTSRLKARKHSKRRVRDKDGDLKTQIEKLW-TEVNALKEIQA
20 30 40 50 60 70
180 190 200 210 220 230
pF1KB3 LEG-CLKGLRLGHKCFLLSRDFEAQAAAQARCTARGGSLAQPADRQQMEALTRYLRAALA
:. ::.: .. .::.: :. .. :. : ..:: :. : . ....:: : . .:
NP_005 LQTVCLRGTKVHKKCYLASEGLKHFHEANEDCISKGGILVIPRNSDEINALQDYGKRSLP
80 90 100 110 120 130
240 250 260 270 280 290
pF1KB3 PYNWPVWLGVHDRRAEGLYLFENGQRVSFFAWHRSPRPELGAQPSASPHPLSPDQPNGGT
: :::..: .:: .. :: .::. : :. :::::
NP_005 GVN-DFWLGINDMVTEGKFVDVNGIAISFLNWDRA-------------------QPNGGK
140 150 160 170
300 310 320
pF1KB3 LENCVA-QASDDGSWWDHDCQRRLYYVCEFPF
:::: . : .:.: :. :. :.:::
NP_005 RENCVLFSQSAQGKWSDEACRSSKRYICEFTIPQ
180 190 200
>>NP_001295323 (OMIM: 187520) tetranectin isoform 2 [Hom (160 aa)
initn: 246 init1: 130 opt: 206 Z-score: 197.9 bits: 43.9 E(85289): 0.00028
Smith-Waterman score: 286; 32.9% identity (60.3% similar) in 146 aa overlap (177-321:29-157)
150 160 170 180 190 200
pF1KB3 RNAAGDTRDAVQALQEAQGRAEREHGRLEGCLKGLRLGHKCFLLSRDFEAQAAAQARCTA
:::: .. :::: . .. :. : .
NP_001 MFEELKSRLDTLAQEVALLKEQQALQTVCLKGTKVHMKCFLAFTQTKTFHEASEDCIS
10 20 30 40 50
210 220 230 240 250 260
pF1KB3 RGGSLAQPADRQQMEALTRYLRAALAPYNWPVWLGVHDRRAEGLYLFENGQRVSFFAWHR
:::.:. : .. .:: .::: ... . .:::..: ::: .. .: :... :.
NP_001 RGGTLGTPQTGSENDALYEYLRQSVGN-EAEIWLGLNDMAAEGTWVDMTGARIAYKNWE-
60 70 80 90 100 110
270 280 290 300 310 320
pF1KB3 SPRPELGAQPSASPHPLSPDQPNGGTLENC-VAQASDDGSWWDHDCQRRLYYVCEFPF
:. ::: .:: ::: : ... .:.:.:. :. .: :.:.:
NP_001 ---TEITAQP------------DGGKTENCAVLSGAANGKWFDKRCRDQLPYICQFGIV
120 130 140 150 160
>>NP_001231684 (OMIM: 613588) C-type lectin domain famil (145 aa)
initn: 297 init1: 120 opt: 205 Z-score: 197.6 bits: 43.7 E(85289): 0.00029
Smith-Waterman score: 281; 32.5% identity (55.2% similar) in 154 aa overlap (169-321:8-141)
140 150 160 170 180 190
pF1KB3 LTQGLRQLRNAAGDTRDAVQALQEAQGRAEREHGRLEGCLKGLRLGHKCFLLSRDFEAQA
:. . : ::.: .. .::.: :. ..
NP_001 MILILQMRKMRHKEVCLRGTKVHKKCYLASEGLKHFH
10 20 30
200 210 220 230 240 250
pF1KB3 AAQARCTARGGSLAQPADRQQMEALTRYLRAALAPYNWPVWLGVHDRRAEGLYLFENGQR
:. : ..:: :. : . ....:: : . .: : :::..: .:: .. ::
NP_001 EANEDCISKGGILVIPRNSDEINALQDYGKRSLPGVN-DFWLGINDMVTEGKFVDVNGIA
40 50 60 70 80 90
260 270 280 290 300 310
pF1KB3 VSFFAWHRSPRPELGAQPSASPHPLSPDQPNGGTLENCVA-QASDDGSWWDHDCQRRLYY
.::. : :. ::::: :::: . : .:.: :. :. :
NP_001 ISFLNWDRA-------------------QPNGGKRENCVLFSQSAQGKWSDEACRSSKRY
100 110 120 130
320
pF1KB3 VCEFPF
.:::
NP_001 ICEFTIPQ
140
>>XP_016862605 (OMIM: 187520) PREDICTED: tetranectin iso (169 aa)
initn: 246 init1: 130 opt: 206 Z-score: 197.6 bits: 43.9 E(85289): 0.00029
Smith-Waterman score: 286; 32.9% identity (60.3% similar) in 146 aa overlap (177-321:38-166)
150 160 170 180 190 200
pF1KB3 RNAAGDTRDAVQALQEAQGRAEREHGRLEGCLKGLRLGHKCFLLSRDFEAQAAAQARCTA
:::: .. :::: . .. :. : .
XP_016 LLLCLFSLLTQVTTEPPTQKPKKIVNAKKVCLKGTKVHMKCFLAFTQTKTFHEASEDCIS
10 20 30 40 50 60
210 220 230 240 250 260
pF1KB3 RGGSLAQPADRQQMEALTRYLRAALAPYNWPVWLGVHDRRAEGLYLFENGQRVSFFAWHR
:::.:. : .. .:: .::: ... . .:::..: ::: .. .: :... :.
XP_016 RGGTLGTPQTGSENDALYEYLRQSVGN-EAEIWLGLNDMAAEGTWVDMTGARIAYKNWE-
70 80 90 100 110 120
270 280 290 300 310 320
pF1KB3 SPRPELGAQPSASPHPLSPDQPNGGTLENC-VAQASDDGSWWDHDCQRRLYYVCEFPF
:. ::: .:: ::: : ... .:.:.:. :. .: :.:.:
XP_016 ---TEITAQP------------DGGKTENCAVLSGAANGKWFDKRCRDQLPYICQFGIV
130 140 150 160
>>NP_003269 (OMIM: 187520) tetranectin isoform 1precurso (202 aa)
initn: 246 init1: 130 opt: 206 Z-score: 196.5 bits: 43.9 E(85289): 0.00033
Smith-Waterman score: 288; 29.5% identity (57.5% similar) in 193 aa overlap (140-321:25-199)
110 120 130 140 150 160
pF1KB3 YILGRLAGLDAGLHQLHVRLHALDTRVVELTQGLRQLRNAAGDTRDAVQALQEAQGRAE-
:: ... :: :. .. . ..: ..: .
NP_003 MELWGAYLLLCLFSLLTQVTTEPPTQKPKKIVNAKKDVVNT-KMFEELKSRLDT
10 20 30 40 50
170 180 190 200 210
pF1KB3 --------REHGRLEG-CLKGLRLGHKCFLLSRDFEAQAAAQARCTARGGSLAQPADRQQ
.:. :. :::: .. :::: . .. :. : .:::.:. : ..
NP_003 LAQEVALLKEQQALQTVCLKGTKVHMKCFLAFTQTKTFHEASEDCISRGGTLGTPQTGSE
60 70 80 90 100 110
220 230 240 250 260 270
pF1KB3 MEALTRYLRAALAPYNWPVWLGVHDRRAEGLYLFENGQRVSFFAWHRSPRPELGAQPSAS
.:: .::: ... .:::..: ::: .. .: :... :. :. :::
NP_003 NDALYEYLRQSVGNEA-EIWLGLNDMAAEGTWVDMTGARIAYKNWE----TEITAQP---
120 130 140 150 160
280 290 300 310 320
pF1KB3 PHPLSPDQPNGGTLENC-VAQASDDGSWWDHDCQRRLYYVCEFPF
.:: ::: : ... .:.:.:. :. .: :.:.:
NP_003 ---------DGGKTENCAVLSGAANGKWFDKRCRDQLPYICQFGIV
170 180 190 200
>>XP_016862606 (OMIM: 187520) PREDICTED: tetranectin iso (209 aa)
initn: 288 init1: 130 opt: 206 Z-score: 196.3 bits: 43.9 E(85289): 0.00034
Smith-Waterman score: 286; 32.9% identity (60.3% similar) in 146 aa overlap (177-321:78-206)
150 160 170 180 190 200
pF1KB3 RNAAGDTRDAVQALQEAQGRAEREHGRLEGCLKGLRLGHKCFLLSRDFEAQAAAQARCTA
:::: .. :::: . .. :. : .
XP_016 PLSPTLPALRRTDPAKGTWQALEACLGCLVCLKGTKVHMKCFLAFTQTKTFHEASEDCIS
50 60 70 80 90 100
210 220 230 240 250 260
pF1KB3 RGGSLAQPADRQQMEALTRYLRAALAPYNWPVWLGVHDRRAEGLYLFENGQRVSFFAWHR
:::.:. : .. .:: .::: ... . .:::..: ::: .. .: :... :.
XP_016 RGGTLGTPQTGSENDALYEYLRQSVGN-EAEIWLGLNDMAAEGTWVDMTGARIAYKNWE-
110 120 130 140 150 160
270 280 290 300 310 320
pF1KB3 SPRPELGAQPSASPHPLSPDQPNGGTLENC-VAQASDDGSWWDHDCQRRLYYVCEFPF
:. ::: .:: ::: : ... .:.:.:. :. .: :.:.:
XP_016 ---TEITAQP------------DGGKTENCAVLSGAANGKWFDKRCRDQLPYICQFGIV
170 180 190 200
323 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 21:07:00 2016 done: Fri Nov 4 21:07:01 2016
Total Scan time: 9.250 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]