Result of FASTA (omim) for
pF1KB3431
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3431, 225 aa
1>>>pF1KB3431 225 - 225 aa - 225 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1051+/-0.000295; mu= 11.2223+/- 0.019
mean_var=97.6567+/-19.832, 0's: 0 Z-trim(119.7): 30 B-trim: 286 in 1/53
Lambda= 0.129785
statistics sampled from 34027 (34057) to 34027 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.399), width: 16
Scan time: 7.190
The best scores are: opt bits E(85289)
NP_001032752 (OMIM: 600655) elongation factor 1-be ( 225) 1483 287.2 1.5e-77
NP_001950 (OMIM: 600655) elongation factor 1-beta ( 225) 1483 287.2 1.5e-77
NP_066944 (OMIM: 600655) elongation factor 1-beta ( 225) 1483 287.2 1.5e-77
NP_001317575 (OMIM: 130592) elongation factor 1-de ( 257) 736 147.3 2.2e-35
NP_001304672 (OMIM: 130592) elongation factor 1-de ( 257) 736 147.3 2.2e-35
NP_001123528 (OMIM: 130592) elongation factor 1-de ( 257) 736 147.3 2.2e-35
NP_001182132 (OMIM: 130592) elongation factor 1-de ( 262) 736 147.3 2.2e-35
NP_001276879 (OMIM: 130592) elongation factor 1-de ( 281) 736 147.4 2.3e-35
XP_006716588 (OMIM: 130592) PREDICTED: elongation ( 281) 736 147.4 2.3e-35
NP_001951 (OMIM: 130592) elongation factor 1-delta ( 281) 736 147.4 2.3e-35
NP_001123529 (OMIM: 130592) elongation factor 1-de ( 281) 736 147.4 2.3e-35
NP_001123527 (OMIM: 130592) elongation factor 1-de ( 281) 736 147.4 2.3e-35
XP_016868661 (OMIM: 130592) PREDICTED: elongation ( 623) 736 147.6 4.4e-35
XP_016868660 (OMIM: 130592) PREDICTED: elongation ( 646) 736 147.6 4.5e-35
XP_005250880 (OMIM: 130592) PREDICTED: elongation ( 647) 736 147.6 4.5e-35
XP_016868659 (OMIM: 130592) PREDICTED: elongation ( 647) 736 147.6 4.5e-35
XP_006716585 (OMIM: 130592) PREDICTED: elongation ( 647) 736 147.6 4.5e-35
NP_115754 (OMIM: 130592) elongation factor 1-delta ( 647) 736 147.6 4.5e-35
XP_006716586 (OMIM: 130592) PREDICTED: elongation ( 647) 736 147.6 4.5e-35
NP_001123525 (OMIM: 130592) elongation factor 1-de ( 647) 736 147.6 4.5e-35
XP_011515207 (OMIM: 130592) PREDICTED: elongation ( 647) 736 147.6 4.5e-35
XP_006716587 (OMIM: 130592) PREDICTED: elongation ( 647) 736 147.6 4.5e-35
XP_011515208 (OMIM: 130592) PREDICTED: elongation ( 647) 736 147.6 4.5e-35
XP_006716583 (OMIM: 130592) PREDICTED: elongation ( 664) 736 147.6 4.6e-35
XP_006716582 (OMIM: 130592) PREDICTED: elongation ( 687) 736 147.6 4.8e-35
XP_005250877 (OMIM: 130592) PREDICTED: elongation ( 688) 736 147.6 4.8e-35
XP_016868657 (OMIM: 130592) PREDICTED: elongation ( 688) 736 147.6 4.8e-35
XP_016868658 (OMIM: 130592) PREDICTED: elongation ( 688) 736 147.6 4.8e-35
>>NP_001032752 (OMIM: 600655) elongation factor 1-beta [ (225 aa)
initn: 1483 init1: 1483 opt: 1483 Z-score: 1513.0 bits: 287.2 E(85289): 1.5e-77
Smith-Waterman score: 1483; 100.0% identity (100.0% similar) in 225 aa overlap (1-225:1-225)
10 20 30 40 50 60
pF1KB3 MGFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 SYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLRE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 ERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPV
130 140 150 160 170 180
190 200 210 220
pF1KB3 GYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 GYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI
190 200 210 220
>>NP_001950 (OMIM: 600655) elongation factor 1-beta [Hom (225 aa)
initn: 1483 init1: 1483 opt: 1483 Z-score: 1513.0 bits: 287.2 E(85289): 1.5e-77
Smith-Waterman score: 1483; 100.0% identity (100.0% similar) in 225 aa overlap (1-225:1-225)
10 20 30 40 50 60
pF1KB3 MGFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 SYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLRE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 ERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPV
130 140 150 160 170 180
190 200 210 220
pF1KB3 GYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 GYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI
190 200 210 220
>>NP_066944 (OMIM: 600655) elongation factor 1-beta [Hom (225 aa)
initn: 1483 init1: 1483 opt: 1483 Z-score: 1513.0 bits: 287.2 E(85289): 1.5e-77
Smith-Waterman score: 1483; 100.0% identity (100.0% similar) in 225 aa overlap (1-225:1-225)
10 20 30 40 50 60
pF1KB3 MGFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MGFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 SYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 SYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLRE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 ERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 ERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPV
130 140 150 160 170 180
190 200 210 220
pF1KB3 GYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI
:::::::::::::::::::::::::::::::::::::::::::::
NP_066 GYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI
190 200 210 220
>>NP_001317575 (OMIM: 130592) elongation factor 1-delta (257 aa)
initn: 726 init1: 726 opt: 736 Z-score: 756.3 bits: 147.3 E(85289): 2.2e-35
Smith-Waterman score: 736; 69.8% identity (85.2% similar) in 169 aa overlap (60-225:93-257)
30 40 50 60 70 80
pF1KB3 PSQADVAVFEAVSSPPPADLCHALRWYNHIKSYEKEKASLPGVKKALGKYGPA-DVEDTT
:: ..:. : .... .: .:: .
NP_001 LEVENQSLRGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHV----SPMRQVEPPA
70 80 90 100 110
90 100 110 120 130 140
pF1KB3 GSGATDSKDD--DDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDV
. :: ..:: :::::::::.:::..:: .:::::: :: ::::::::::::::::::
NP_001 KKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDV
120 130 140 150 160 170
150 160 170 180 190 200
pF1KB3 KPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQ
::::::::::.:: :::::: ::::::.::::::::::.::::::::::::::::.:::.
NP_001 KPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEE
180 190 200 210 220 230
210 220
pF1KB3 ITAFEDYVQSMDVAAFNKI
:: ::..:::.:.::::::
NP_001 ITKFEEHVQSVDIAAFNKI
240 250
>>NP_001304672 (OMIM: 130592) elongation factor 1-delta (257 aa)
initn: 726 init1: 726 opt: 736 Z-score: 756.3 bits: 147.3 E(85289): 2.2e-35
Smith-Waterman score: 736; 69.8% identity (85.2% similar) in 169 aa overlap (60-225:93-257)
30 40 50 60 70 80
pF1KB3 PSQADVAVFEAVSSPPPADLCHALRWYNHIKSYEKEKASLPGVKKALGKYGPA-DVEDTT
:: ..:. : .... .: .:: .
NP_001 LEVENQSLRGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHV----SPMRQVEPPA
70 80 90 100 110
90 100 110 120 130 140
pF1KB3 GSGATDSKDD--DDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDV
. :: ..:: :::::::::.:::..:: .:::::: :: ::::::::::::::::::
NP_001 KKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDV
120 130 140 150 160 170
150 160 170 180 190 200
pF1KB3 KPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQ
::::::::::.:: :::::: ::::::.::::::::::.::::::::::::::::.:::.
NP_001 KPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEE
180 190 200 210 220 230
210 220
pF1KB3 ITAFEDYVQSMDVAAFNKI
:: ::..:::.:.::::::
NP_001 ITKFEEHVQSVDIAAFNKI
240 250
>>NP_001123528 (OMIM: 130592) elongation factor 1-delta (257 aa)
initn: 726 init1: 726 opt: 736 Z-score: 756.3 bits: 147.3 E(85289): 2.2e-35
Smith-Waterman score: 736; 69.8% identity (85.2% similar) in 169 aa overlap (60-225:93-257)
30 40 50 60 70 80
pF1KB3 PSQADVAVFEAVSSPPPADLCHALRWYNHIKSYEKEKASLPGVKKALGKYGPA-DVEDTT
:: ..:. : .... .: .:: .
NP_001 LEVENQSLRGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHV----SPMRQVEPPA
70 80 90 100 110
90 100 110 120 130 140
pF1KB3 GSGATDSKDD--DDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDV
. :: ..:: :::::::::.:::..:: .:::::: :: ::::::::::::::::::
NP_001 KKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDV
120 130 140 150 160 170
150 160 170 180 190 200
pF1KB3 KPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQ
::::::::::.:: :::::: ::::::.::::::::::.::::::::::::::::.:::.
NP_001 KPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEE
180 190 200 210 220 230
210 220
pF1KB3 ITAFEDYVQSMDVAAFNKI
:: ::..:::.:.::::::
NP_001 ITKFEEHVQSVDIAAFNKI
240 250
>>NP_001182132 (OMIM: 130592) elongation factor 1-delta (262 aa)
initn: 726 init1: 726 opt: 736 Z-score: 756.2 bits: 147.3 E(85289): 2.2e-35
Smith-Waterman score: 736; 69.8% identity (85.2% similar) in 169 aa overlap (60-225:98-262)
30 40 50 60 70 80
pF1KB3 PSQADVAVFEAVSSPPPADLCHALRWYNHIKSYEKEKASLPGVKKALGKYGPA-DVEDTT
:: ..:. : .... .: .:: .
NP_001 GASSGTSGDHVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHV----SPMRQVEPPA
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB3 GSGATDSKDD--DDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDV
. :: ..:: :::::::::.:::..:: .:::::: :: ::::::::::::::::::
NP_001 KKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDV
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB3 KPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQ
::::::::::.:: :::::: ::::::.::::::::::.::::::::::::::::.:::.
NP_001 KPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEE
190 200 210 220 230 240
210 220
pF1KB3 ITAFEDYVQSMDVAAFNKI
:: ::..:::.:.::::::
NP_001 ITKFEEHVQSVDIAAFNKI
250 260
>>NP_001276879 (OMIM: 130592) elongation factor 1-delta (281 aa)
initn: 726 init1: 726 opt: 736 Z-score: 755.7 bits: 147.4 E(85289): 2.3e-35
Smith-Waterman score: 736; 69.8% identity (85.2% similar) in 169 aa overlap (60-225:117-281)
30 40 50 60 70 80
pF1KB3 PSQADVAVFEAVSSPPPADLCHALRWYNHIKSYEKEKASLPGVKKALGKYGPA-DVEDTT
:: ..:. : .... .: .:: .
NP_001 LEVENQSLRGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHV----SPMRQVEPPA
90 100 110 120 130 140
90 100 110 120 130 140
pF1KB3 GSGATDSKDD--DDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDV
. :: ..:: :::::::::.:::..:: .:::::: :: ::::::::::::::::::
NP_001 KKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDV
150 160 170 180 190 200
150 160 170 180 190 200
pF1KB3 KPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQ
::::::::::.:: :::::: ::::::.::::::::::.::::::::::::::::.:::.
NP_001 KPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEE
210 220 230 240 250 260
210 220
pF1KB3 ITAFEDYVQSMDVAAFNKI
:: ::..:::.:.::::::
NP_001 ITKFEEHVQSVDIAAFNKI
270 280
>>XP_006716588 (OMIM: 130592) PREDICTED: elongation fact (281 aa)
initn: 726 init1: 726 opt: 736 Z-score: 755.7 bits: 147.4 E(85289): 2.3e-35
Smith-Waterman score: 736; 69.8% identity (85.2% similar) in 169 aa overlap (60-225:117-281)
30 40 50 60 70 80
pF1KB3 PSQADVAVFEAVSSPPPADLCHALRWYNHIKSYEKEKASLPGVKKALGKYGPA-DVEDTT
:: ..:. : .... .: .:: .
XP_006 LEVENQSLRGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHV----SPMRQVEPPA
90 100 110 120 130 140
90 100 110 120 130 140
pF1KB3 GSGATDSKDD--DDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDV
. :: ..:: :::::::::.:::..:: .:::::: :: ::::::::::::::::::
XP_006 KKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDV
150 160 170 180 190 200
150 160 170 180 190 200
pF1KB3 KPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQ
::::::::::.:: :::::: ::::::.::::::::::.::::::::::::::::.:::.
XP_006 KPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEE
210 220 230 240 250 260
210 220
pF1KB3 ITAFEDYVQSMDVAAFNKI
:: ::..:::.:.::::::
XP_006 ITKFEEHVQSVDIAAFNKI
270 280
>>NP_001951 (OMIM: 130592) elongation factor 1-delta iso (281 aa)
initn: 726 init1: 726 opt: 736 Z-score: 755.7 bits: 147.4 E(85289): 2.3e-35
Smith-Waterman score: 736; 69.8% identity (85.2% similar) in 169 aa overlap (60-225:117-281)
30 40 50 60 70 80
pF1KB3 PSQADVAVFEAVSSPPPADLCHALRWYNHIKSYEKEKASLPGVKKALGKYGPA-DVEDTT
:: ..:. : .... .: .:: .
NP_001 LEVENQSLRGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHV----SPMRQVEPPA
90 100 110 120 130 140
90 100 110 120 130 140
pF1KB3 GSGATDSKDD--DDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDV
. :: ..:: :::::::::.:::..:: .:::::: :: ::::::::::::::::::
NP_001 KKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDV
150 160 170 180 190 200
150 160 170 180 190 200
pF1KB3 KPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQ
::::::::::.:: :::::: ::::::.::::::::::.::::::::::::::::.:::.
NP_001 KPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEE
210 220 230 240 250 260
210 220
pF1KB3 ITAFEDYVQSMDVAAFNKI
:: ::..:::.:.::::::
NP_001 ITKFEEHVQSVDIAAFNKI
270 280
225 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:01:23 2016 done: Sat Nov 5 05:01:24 2016
Total Scan time: 7.190 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]