FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3431, 225 aa
  1>>>pF1KB3431 225 - 225 aa - 225 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0899+/-0.000721; mu= 11.3789+/- 0.044
 mean_var=97.5640+/-19.625, 0's: 0 Z-trim(112.1): 6  B-trim: 608 in 1/51
 Lambda= 0.129846
 statistics sampled from 12936 (12942) to 12936 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.398), width:  16
 Scan time:  2.200

The best scores are:                                      opt bits E(32554)
CCDS2367.1 EEF1B2 gene_id:1933|Hs108|chr2          ( 225) 1483 287.3 5.4e-78
CCDS47930.1 EEF1D gene_id:1936|Hs108|chr8          ( 257)  736 147.4   8e-36
CCDS56559.1 EEF1D gene_id:1936|Hs108|chr8          ( 262)  736 147.4 8.1e-36
CCDS6405.1 EEF1D gene_id:1936|Hs108|chr8           ( 281)  736 147.4 8.6e-36
CCDS6404.1 EEF1D gene_id:1936|Hs108|chr8           ( 647)  736 147.7 1.7e-35


>>CCDS2367.1 EEF1B2 gene_id:1933|Hs108|chr2               (225 aa)
 initn: 1483 init1: 1483 opt: 1483  Z-score: 1513.7  bits: 287.3 E(32554): 5.4e-78
Smith-Waterman score: 1483; 100.0% identity (100.0% similar) in 225 aa overlap (1-225:1-225)

               10        20        30        40        50        60
pF1KB3 MGFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 MGFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 SYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 SYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLRE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 ERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 ERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPV
              130       140       150       160       170       180

              190       200       210       220     
pF1KB3 GYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS23 GYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI
              190       200       210       220     

>>CCDS47930.1 EEF1D gene_id:1936|Hs108|chr8               (257 aa)
 initn: 726 init1: 726 opt: 736  Z-score: 756.6  bits: 147.4 E(32554): 8e-36
Smith-Waterman score: 736; 69.8% identity (85.2% similar) in 169 aa overlap (60-225:93-257)

      30        40        50        60        70        80         
pF1KB3 PSQADVAVFEAVSSPPPADLCHALRWYNHIKSYEKEKASLPGVKKALGKYGPA-DVEDTT
                                     ::   ..:. : ....    .:  .::  .
CCDS47 LEVENQSLRGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHV----SPMRQVEPPA
             70        80        90       100           110        

       90         100       110       120       130       140      
pF1KB3 GSGATDSKDD--DDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDV
        . :: ..::  :::::::::.:::..:: .:::::: ::  ::::::::::::::::::
CCDS47 KKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDV
      120       130       140       150       160       170        

        150       160       170       180       190       200      
pF1KB3 KPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQ
       ::::::::::.:: :::::: ::::::.::::::::::.::::::::::::::::.:::.
CCDS47 KPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEE
      180       190       200       210       220       230        

        210       220     
pF1KB3 ITAFEDYVQSMDVAAFNKI
       :: ::..:::.:.::::::
CCDS47 ITKFEEHVQSVDIAAFNKI
      240       250       

>>CCDS56559.1 EEF1D gene_id:1936|Hs108|chr8               (262 aa)
 initn: 726 init1: 726 opt: 736  Z-score: 756.5  bits: 147.4 E(32554): 8.1e-36
Smith-Waterman score: 736; 69.8% identity (85.2% similar) in 169 aa overlap (60-225:98-262)

      30        40        50        60        70        80         
pF1KB3 PSQADVAVFEAVSSPPPADLCHALRWYNHIKSYEKEKASLPGVKKALGKYGPA-DVEDTT
                                     ::   ..:. : ....    .:  .::  .
CCDS56 GASSGTSGDHVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHV----SPMRQVEPPA
        70        80        90       100       110           120   

       90         100       110       120       130       140      
pF1KB3 GSGATDSKDD--DDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDV
        . :: ..::  :::::::::.:::..:: .:::::: ::  ::::::::::::::::::
CCDS56 KKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDV
           130       140       150       160       170       180   

        150       160       170       180       190       200      
pF1KB3 KPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQ
       ::::::::::.:: :::::: ::::::.::::::::::.::::::::::::::::.:::.
CCDS56 KPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEE
           190       200       210       220       230       240   

        210       220     
pF1KB3 ITAFEDYVQSMDVAAFNKI
       :: ::..:::.:.::::::
CCDS56 ITKFEEHVQSVDIAAFNKI
           250       260  

>>CCDS6405.1 EEF1D gene_id:1936|Hs108|chr8                (281 aa)
 initn: 726 init1: 726 opt: 736  Z-score: 756.0  bits: 147.4 E(32554): 8.6e-36
Smith-Waterman score: 736; 69.8% identity (85.2% similar) in 169 aa overlap (60-225:117-281)

      30        40        50        60        70        80         
pF1KB3 PSQADVAVFEAVSSPPPADLCHALRWYNHIKSYEKEKASLPGVKKALGKYGPA-DVEDTT
                                     ::   ..:. : ....    .:  .::  .
CCDS64 LEVENQSLRGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHV----SPMRQVEPPA
         90       100       110       120       130           140  

       90         100       110       120       130       140      
pF1KB3 GSGATDSKDD--DDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDV
        . :: ..::  :::::::::.:::..:: .:::::: ::  ::::::::::::::::::
CCDS64 KKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDV
            150       160       170       180       190       200  

        150       160       170       180       190       200      
pF1KB3 KPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQ
       ::::::::::.:: :::::: ::::::.::::::::::.::::::::::::::::.:::.
CCDS64 KPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEE
            210       220       230       240       250       260  

        210       220     
pF1KB3 ITAFEDYVQSMDVAAFNKI
       :: ::..:::.:.::::::
CCDS64 ITKFEEHVQSVDIAAFNKI
            270       280 

>>CCDS6404.1 EEF1D gene_id:1936|Hs108|chr8                (647 aa)
 initn: 749 init1: 726 opt: 736  Z-score: 750.9  bits: 147.7 E(32554): 1.7e-35
Smith-Waterman score: 736; 69.8% identity (85.2% similar) in 169 aa overlap (60-225:483-647)

      30        40        50        60        70        80         
pF1KB3 PSQADVAVFEAVSSPPPADLCHALRWYNHIKSYEKEKASLPGVKKALGKYGPA-DVEDTT
                                     ::   ..:. : ....    .:  .::  .
CCDS64 LEVENQSLRGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHV----SPMRQVEPPA
            460       470       480       490           500        

       90         100       110       120       130       140      
pF1KB3 GSGATDSKDD--DDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDV
        . :: ..::  :::::::::.:::..:: .:::::: ::  ::::::::::::::::::
CCDS64 KKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDV
      510       520       530       540       550       560        

        150       160       170       180       190       200      
pF1KB3 KPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQ
       ::::::::::.:: :::::: ::::::.::::::::::.::::::::::::::::.:::.
CCDS64 KPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEE
      570       580       590       600       610       620        

        210       220     
pF1KB3 ITAFEDYVQSMDVAAFNKI
       :: ::..:::.:.::::::
CCDS64 ITKFEEHVQSVDIAAFNKI
      630       640       




225 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:01:22 2016 done: Sat Nov  5 05:01:22 2016
 Total Scan time:  2.200 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]