FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3429, 192 aa
  1>>>pF1KB3429 192 - 192 aa - 192 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7636+/-0.000393; mu= 15.4592+/- 0.024
 mean_var=54.0397+/-10.810, 0's: 0 Z-trim(110.4): 40  B-trim: 998 in 1/54
 Lambda= 0.174469
 statistics sampled from 18681 (18705) to 18681 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.6), E-opt: 0.2 (0.219), width:  16
 Scan time:  5.390

The best scores are:                                      opt bits E(85289)
NP_001020092 (OMIM: 603686) 60S ribosomal protein  ( 192) 1234 318.6 3.9e-87
NP_000652 (OMIM: 603686) 60S ribosomal protein L9  ( 192) 1234 318.6 3.9e-87


>>NP_001020092 (OMIM: 603686) 60S ribosomal protein L9 [  (192 aa)
 initn: 1234 init1: 1234 opt: 1234  Z-score: 1685.4  bits: 318.6 E(85289): 3.9e-87
Smith-Waterman score: 1234; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192)

               10        20        30        40        50        60
pF1KB3 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
              130       140       150       160       170       180

              190  
pF1KB3 VSEKGTVQQADE
       ::::::::::::
NP_001 VSEKGTVQQADE
              190  

>>NP_000652 (OMIM: 603686) 60S ribosomal protein L9 [Hom  (192 aa)
 initn: 1234 init1: 1234 opt: 1234  Z-score: 1685.4  bits: 318.6 E(85289): 3.9e-87
Smith-Waterman score: 1234; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192)

               10        20        30        40        50        60
pF1KB3 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
              130       140       150       160       170       180

              190  
pF1KB3 VSEKGTVQQADE
       ::::::::::::
NP_000 VSEKGTVQQADE
              190  




192 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:00:37 2016 done: Sat Nov  5 05:00:38 2016
 Total Scan time:  5.390 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]