FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3429, 192 aa
  1>>>pF1KB3429 192 - 192 aa - 192 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9713+/-0.000891; mu= 13.9974+/- 0.053
 mean_var=51.2184+/- 9.862, 0's: 0 Z-trim(103.7): 24  B-trim: 0 in 0/50
 Lambda= 0.179210
 statistics sampled from 7529 (7534) to 7529 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.615), E-opt: 0.2 (0.231), width:  16
 Scan time:  1.840

The best scores are:                                      opt bits E(32554)
CCDS3452.1 RPL9 gene_id:6133|Hs108|chr4            ( 192) 1234 326.8 5.1e-90


>>CCDS3452.1 RPL9 gene_id:6133|Hs108|chr4                 (192 aa)
 initn: 1234 init1: 1234 opt: 1234  Z-score: 1729.6  bits: 326.8 E(32554): 5.1e-90
Smith-Waterman score: 1234; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192)

               10        20        30        40        50        60
pF1KB3 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
              130       140       150       160       170       180

              190  
pF1KB3 VSEKGTVQQADE
       ::::::::::::
CCDS34 VSEKGTVQQADE
              190  




192 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:00:37 2016 done: Sat Nov  5 05:00:37 2016
 Total Scan time:  1.840 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]