Result of FASTA (omim) for
pF1KB3423
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3423, 334 aa
1>>>pF1KB3423 334 - 334 aa - 334 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.2240+/-0.000506; mu= 2.8530+/- 0.031
mean_var=222.5892+/-47.563, 0's: 0 Z-trim(115.0): 88 B-trim: 866 in 1/57
Lambda= 0.085965
statistics sampled from 25165 (25254) to 25165 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.296), width: 16
Scan time: 5.270
The best scores are: opt bits E(85289)
NP_001136059 (OMIM: 605344) nuclear transcription ( 334) 2167 281.8 1.4e-75
NP_055038 (OMIM: 605344) nuclear transcription fac ( 335) 2155 280.3 3.9e-75
XP_006710725 (OMIM: 605344) PREDICTED: nuclear tra ( 335) 2155 280.3 3.9e-75
XP_016856857 (OMIM: 605344) PREDICTED: nuclear tra ( 335) 2155 280.3 3.9e-75
XP_016856858 (OMIM: 605344) PREDICTED: nuclear tra ( 335) 2155 280.3 3.9e-75
XP_016856855 (OMIM: 605344) PREDICTED: nuclear tra ( 355) 2155 280.4 4e-75
XP_006710721 (OMIM: 605344) PREDICTED: nuclear tra ( 439) 1932 252.8 9.9e-67
XP_006710724 (OMIM: 605344) PREDICTED: nuclear tra ( 439) 1932 252.8 9.9e-67
NP_001295044 (OMIM: 605344) nuclear transcription ( 439) 1932 252.8 9.9e-67
XP_016856853 (OMIM: 605344) PREDICTED: nuclear tra ( 459) 1932 252.8 1e-66
XP_006710723 (OMIM: 605344) PREDICTED: nuclear tra ( 354) 1809 237.5 3.3e-62
XP_016856856 (OMIM: 605344) PREDICTED: nuclear tra ( 354) 1809 237.5 3.3e-62
NP_001136060 (OMIM: 605344) nuclear transcription ( 354) 1809 237.5 3.3e-62
XP_011539819 (OMIM: 605344) PREDICTED: nuclear tra ( 427) 1799 236.3 9e-62
XP_016856854 (OMIM: 605344) PREDICTED: nuclear tra ( 458) 1799 236.3 9.4e-62
NP_001295043 (OMIM: 605344) nuclear transcription ( 458) 1799 236.3 9.4e-62
XP_005270951 (OMIM: 605344) PREDICTED: nuclear tra ( 458) 1799 236.3 9.4e-62
XP_005270952 (OMIM: 605344) PREDICTED: nuclear tra ( 458) 1799 236.3 9.4e-62
XP_011539818 (OMIM: 605344) PREDICTED: nuclear tra ( 458) 1799 236.3 9.4e-62
NP_001136061 (OMIM: 605344) nuclear transcription ( 297) 1538 203.8 3.9e-52
NP_001136062 (OMIM: 605344) nuclear transcription ( 301) 1326 177.5 3.2e-44
>>NP_001136059 (OMIM: 605344) nuclear transcription fact (334 aa)
initn: 2167 init1: 2167 opt: 2167 Z-score: 1478.0 bits: 281.8 E(85289): 1.4e-75
Smith-Waterman score: 2167; 100.0% identity (100.0% similar) in 334 aa overlap (1-334:1-334)
10 20 30 40 50 60
pF1KB3 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQLYQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQLYQI
250 260 270 280 290 300
310 320 330
pF1KB3 QQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
::::::::::::::::::::::::::::::::::
NP_001 QQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
310 320 330
>>NP_055038 (OMIM: 605344) nuclear transcription factor (335 aa)
initn: 1909 init1: 1909 opt: 2155 Z-score: 1470.0 bits: 280.3 E(85289): 3.9e-75
Smith-Waterman score: 2155; 99.7% identity (99.7% similar) in 335 aa overlap (1-334:1-335)
10 20 30 40 50 60
pF1KB3 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
190 200 210 220 230 240
250 260 270 280 290
pF1KB3 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQ-LYQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
NP_055 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQ
250 260 270 280 290 300
300 310 320 330
pF1KB3 IQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
:::::::::::::::::::::::::::::::::::
NP_055 IQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
310 320 330
>>XP_006710725 (OMIM: 605344) PREDICTED: nuclear transcr (335 aa)
initn: 1909 init1: 1909 opt: 2155 Z-score: 1470.0 bits: 280.3 E(85289): 3.9e-75
Smith-Waterman score: 2155; 99.7% identity (99.7% similar) in 335 aa overlap (1-334:1-335)
10 20 30 40 50 60
pF1KB3 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
190 200 210 220 230 240
250 260 270 280 290
pF1KB3 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQ-LYQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
XP_006 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQ
250 260 270 280 290 300
300 310 320 330
pF1KB3 IQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
:::::::::::::::::::::::::::::::::::
XP_006 IQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
310 320 330
>>XP_016856857 (OMIM: 605344) PREDICTED: nuclear transcr (335 aa)
initn: 1909 init1: 1909 opt: 2155 Z-score: 1470.0 bits: 280.3 E(85289): 3.9e-75
Smith-Waterman score: 2155; 99.7% identity (99.7% similar) in 335 aa overlap (1-334:1-335)
10 20 30 40 50 60
pF1KB3 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
190 200 210 220 230 240
250 260 270 280 290
pF1KB3 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQ-LYQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
XP_016 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQ
250 260 270 280 290 300
300 310 320 330
pF1KB3 IQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
:::::::::::::::::::::::::::::::::::
XP_016 IQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
310 320 330
>>XP_016856858 (OMIM: 605344) PREDICTED: nuclear transcr (335 aa)
initn: 1909 init1: 1909 opt: 2155 Z-score: 1470.0 bits: 280.3 E(85289): 3.9e-75
Smith-Waterman score: 2155; 99.7% identity (99.7% similar) in 335 aa overlap (1-334:1-335)
10 20 30 40 50 60
pF1KB3 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
190 200 210 220 230 240
250 260 270 280 290
pF1KB3 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQ-LYQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
XP_016 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQQLYQ
250 260 270 280 290 300
300 310 320 330
pF1KB3 IQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
:::::::::::::::::::::::::::::::::::
XP_016 IQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
310 320 330
>>XP_016856855 (OMIM: 605344) PREDICTED: nuclear transcr (355 aa)
initn: 1909 init1: 1909 opt: 2155 Z-score: 1469.6 bits: 280.4 E(85289): 4e-75
Smith-Waterman score: 2155; 99.7% identity (99.7% similar) in 335 aa overlap (1-334:21-355)
10 20 30 40
pF1KB3 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRV
::::::::::::::::::::::::::::::::::::::::
XP_016 MTEEDMIKMQVTKVSEEVVEMSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB3 QELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRND
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB3 IAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQ
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB3 QQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTG
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB3 QTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQT
250 260 270 280 290 300
290 300 310 320 330
pF1KB3 EVQQGQQQFSQFTDGQ-LYQIQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
:::::::::::::::: ::::::::::::::::::::::::::::::::::::::
XP_016 EVQQGQQQFSQFTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQPSDGQAPQVTGD
310 320 330 340 350
>>XP_006710721 (OMIM: 605344) PREDICTED: nuclear transcr (439 aa)
initn: 1922 init1: 1922 opt: 1932 Z-score: 1319.0 bits: 252.8 E(85289): 9.9e-67
Smith-Waterman score: 1932; 91.2% identity (95.2% similar) in 331 aa overlap (1-329:1-331)
10 20 30 40 50 60
pF1KB3 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQLYQI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: ..
XP_006 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQRNSV
250 260 270 280 290 300
310 320 330
pF1KB3 QQVTMPAGQDLAQPMFIQSANQ--PSDGQAPQVTGD
::. . :.: ...... : .. :
XP_006 QQARVSELTGEAEPREVKATGNSTPCTSSLPTTHPPSHRAGASCVCCSQPQQSSTSPPPS
310 320 330 340 350 360
XP_006 DALQWVVVEVSGTPNQLETHRELHAPLPGMTSLSPLHPSQQLYQIQQVTMPAGQDLAQPM
370 380 390 400 410 420
>--
initn: 265 init1: 265 opt: 265 Z-score: 201.7 bits: 46.1 E(85289): 0.00017
Smith-Waterman score: 265; 100.0% identity (100.0% similar) in 39 aa overlap (296-334:401-439)
270 280 290 300 310 320
pF1KB3 QIQTLATNAQQITQTEVQQGQQQFSQFTDGQLYQIQQVTMPAGQDLAQPMFIQSANQPSD
::::::::::::::::::::::::::::::
XP_006 SGTPNQLETHRELHAPLPGMTSLSPLHPSQQLYQIQQVTMPAGQDLAQPMFIQSANQPSD
380 390 400 410 420 430
330
pF1KB3 GQAPQVTGD
:::::::::
XP_006 GQAPQVTGD
>>XP_006710724 (OMIM: 605344) PREDICTED: nuclear transcr (439 aa)
initn: 1922 init1: 1922 opt: 1932 Z-score: 1319.0 bits: 252.8 E(85289): 9.9e-67
Smith-Waterman score: 1932; 91.2% identity (95.2% similar) in 331 aa overlap (1-329:1-331)
10 20 30 40 50 60
pF1KB3 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQLYQI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: ..
XP_006 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQRNSV
250 260 270 280 290 300
310 320 330
pF1KB3 QQVTMPAGQDLAQPMFIQSANQ--PSDGQAPQVTGD
::. . :.: ...... : .. :
XP_006 QQARVSELTGEAEPREVKATGNSTPCTSSLPTTHPPSHRAGASCVCCSQPQQSSTSPPPS
310 320 330 340 350 360
XP_006 DALQWVVVEVSGTPNQLETHRELHAPLPGMTSLSPLHPSQQLYQIQQVTMPAGQDLAQPM
370 380 390 400 410 420
>--
initn: 265 init1: 265 opt: 265 Z-score: 201.7 bits: 46.1 E(85289): 0.00017
Smith-Waterman score: 265; 100.0% identity (100.0% similar) in 39 aa overlap (296-334:401-439)
270 280 290 300 310 320
pF1KB3 QIQTLATNAQQITQTEVQQGQQQFSQFTDGQLYQIQQVTMPAGQDLAQPMFIQSANQPSD
::::::::::::::::::::::::::::::
XP_006 SGTPNQLETHRELHAPLPGMTSLSPLHPSQQLYQIQQVTMPAGQDLAQPMFIQSANQPSD
380 390 400 410 420 430
330
pF1KB3 GQAPQVTGD
:::::::::
XP_006 GQAPQVTGD
>>NP_001295044 (OMIM: 605344) nuclear transcription fact (439 aa)
initn: 1922 init1: 1922 opt: 1932 Z-score: 1319.0 bits: 252.8 E(85289): 9.9e-67
Smith-Waterman score: 1932; 91.2% identity (95.2% similar) in 331 aa overlap (1-329:1-331)
10 20 30 40 50 60
pF1KB3 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQQQGQQTTSSTTTIQPGQIII
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQLYQI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: ..
NP_001 VQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQTEVQQGQQQFSQFTDGQRNSV
250 260 270 280 290 300
310 320 330
pF1KB3 QQVTMPAGQDLAQPMFIQSANQ--PSDGQAPQVTGD
::. . :.: ...... : .. :
NP_001 QQARVSELTGEAEPREVKATGNSTPCTSSLPTTHPPSHRAGASCVCCSQPQQSSTSPPPS
310 320 330 340 350 360
NP_001 DALQWVVVEVSGTPNQLETHRELHAPLPGMTSLSPLHPSQQLYQIQQVTMPAGQDLAQPM
370 380 390 400 410 420
>--
initn: 265 init1: 265 opt: 265 Z-score: 201.7 bits: 46.1 E(85289): 0.00017
Smith-Waterman score: 265; 100.0% identity (100.0% similar) in 39 aa overlap (296-334:401-439)
270 280 290 300 310 320
pF1KB3 QIQTLATNAQQITQTEVQQGQQQFSQFTDGQLYQIQQVTMPAGQDLAQPMFIQSANQPSD
::::::::::::::::::::::::::::::
NP_001 SGTPNQLETHRELHAPLPGMTSLSPLHPSQQLYQIQQVTMPAGQDLAQPMFIQSANQPSD
380 390 400 410 420 430
330
pF1KB3 GQAPQVTGD
:::::::::
NP_001 GQAPQVTGD
>>XP_016856853 (OMIM: 605344) PREDICTED: nuclear transcr (459 aa)
initn: 1922 init1: 1922 opt: 1932 Z-score: 1318.7 bits: 252.8 E(85289): 1e-66
Smith-Waterman score: 1932; 91.2% identity (95.2% similar) in 331 aa overlap (1-329:21-351)
10 20 30 40
pF1KB3 MSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRV
::::::::::::::::::::::::::::::::::::::::
XP_016 MTEEDMIKMQVTKVSEEVVEMSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB3 QELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRND
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB3 IAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQ
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB3 QQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTG
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB3 QTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQT
250 260 270 280 290 300
290 300 310 320 330
pF1KB3 EVQQGQQQFSQFTDGQLYQIQQVTMPAGQDLAQPMFIQSANQ--PSDGQAPQVTGD
:::::::::::::::: ..::. . :.: ...... : .. :
XP_016 EVQQGQQQFSQFTDGQRNSVQQARVSELTGEAEPREVKATGNSTPCTSSLPTTHPPSHRA
310 320 330 340 350 360
XP_016 GASCVCCSQPQQSSTSPPPSDALQWVVVEVSGTPNQLETHRELHAPLPGMTSLSPLHPSQ
370 380 390 400 410 420
>--
initn: 265 init1: 265 opt: 265 Z-score: 201.4 bits: 46.1 E(85289): 0.00018
Smith-Waterman score: 265; 100.0% identity (100.0% similar) in 39 aa overlap (296-334:421-459)
270 280 290 300 310 320
pF1KB3 QIQTLATNAQQITQTEVQQGQQQFSQFTDGQLYQIQQVTMPAGQDLAQPMFIQSANQPSD
::::::::::::::::::::::::::::::
XP_016 SGTPNQLETHRELHAPLPGMTSLSPLHPSQQLYQIQQVTMPAGQDLAQPMFIQSANQPSD
400 410 420 430 440 450
330
pF1KB3 GQAPQVTGD
:::::::::
XP_016 GQAPQVTGD
334 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 20:58:05 2016 done: Thu Nov 3 20:58:06 2016
Total Scan time: 5.270 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]