FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3422, 131 aa
  1>>>pF1KB3422 131 - 131 aa - 131 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9350+/-0.000743; mu= 8.3276+/- 0.045
 mean_var=76.9142+/-14.652, 0's: 0 Z-trim(109.4): 13  B-trim: 0 in 0/51
 Lambda= 0.146242
 statistics sampled from 10857 (10869) to 10857 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.334), width:  16
 Scan time:  1.600

The best scores are:                                      opt bits E(32554)
CCDS6379.1 CHRAC1 gene_id:54108|Hs108|chr8         ( 131)  819 181.4 1.4e-46


>>CCDS6379.1 CHRAC1 gene_id:54108|Hs108|chr8              (131 aa)
 initn: 819 init1: 819 opt: 819  Z-score: 949.9  bits: 181.4 E(32554): 1.4e-46
Smith-Waterman score: 819; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131)

               10        20        30        40        50        60
pF1KB3 MADVVVGKDKGGEQRLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MADVVVGKDKGGEQRLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 YRHGSGKEKKVLTYSDLANTAQQSETFQFLADILPKKILASKYLKMLKEEKREEDEENDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 YRHGSGKEKKVLTYSDLANTAQQSETFQFLADILPKKILASKYLKMLKEEKREEDEENDN
               70        80        90       100       110       120

              130 
pF1KB3 DNESDHDEADS
       :::::::::::
CCDS63 DNESDHDEADS
              130 




131 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:22:09 2016 done: Fri Nov  4 02:22:09 2016
 Total Scan time:  1.600 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]