FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3421, 243 aa
  1>>>pF1KB3421 243 - 243 aa - 243 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7428+/-0.000797; mu= 8.4255+/- 0.048
 mean_var=101.4110+/-20.023, 0's: 0 Z-trim(110.5): 4  B-trim: 45 in 1/49
 Lambda= 0.127360
 statistics sampled from 11640 (11642) to 11640 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.358), width:  16
 Scan time:  2.330

The best scores are:                                      opt bits E(32554)
CCDS8236.1 RPS3 gene_id:6188|Hs108|chr11           ( 243) 1589 301.8 2.8e-82
CCDS58161.1 RPS3 gene_id:6188|Hs108|chr11          ( 259) 1079 208.1 4.7e-54


>>CCDS8236.1 RPS3 gene_id:6188|Hs108|chr11                (243 aa)
 initn: 1589 init1: 1589 opt: 1589  Z-score: 1590.8  bits: 301.8 E(32554): 2.8e-82
Smith-Waterman score: 1589; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)

               10        20        30        40        50        60
pF1KB3 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV
              190       200       210       220       230       240

          
pF1KB3 PTA
       :::
CCDS82 PTA
          

>>CCDS58161.1 RPS3 gene_id:6188|Hs108|chr11               (259 aa)
 initn: 1065 init1: 1065 opt: 1079  Z-score: 1083.9  bits: 208.1 E(32554): 4.7e-54
Smith-Waterman score: 1547; 93.8% identity (93.8% similar) in 259 aa overlap (1-243:1-259)

               10        20        30        40        50        60
pF1KB3 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
               10        20        30        40        50        60

               70        80                        90       100    
pF1KB3 EKGRRIRELTAVVQKRFGFPEGSVEL----------------YAEKVATRGLCAIAQAES
       ::::::::::::::::::::::::::                ::::::::::::::::::
CCDS58 EKGRRIRELTAVVQKRFGFPEGSVELKIMVMVTGYPLLPLKLYAEKVATRGLCAIAQAES
               70        80        90       100       110       120

          110       120       130       140       150       160    
pF1KB3 LRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPV
              130       140       150       160       170       180

          170       180       190       200       210       220    
pF1KB3 NYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 NYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPIS
              190       200       210       220       230       240

          230       240   
pF1KB3 EQKGGKPEPPAMPQPVPTA
       :::::::::::::::::::
CCDS58 EQKGGKPEPPAMPQPVPTA
              250         




243 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:21:34 2016 done: Fri Nov  4 02:21:34 2016
 Total Scan time:  2.330 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]