FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3416, 137 aa
  1>>>pF1KB3416 137 - 137 aa - 137 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1233+/-0.000302; mu= 11.4688+/- 0.019
 mean_var=53.4451+/-10.641, 0's: 0 Z-trim(116.9): 4  B-trim: 0 in 0/50
 Lambda= 0.175437
 statistics sampled from 28510 (28514) to 28510 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.334), width:  16
 Scan time:  4.880

The best scores are:                                      opt bits E(85289)
NP_057149 (OMIM: 609204,610498) 28S ribosomal prot ( 137)  929 242.5 1.6e-64
XP_016871794 (OMIM: 609204,610498) PREDICTED: 28S  (  99)  654 172.8 1.1e-43


>>NP_057149 (OMIM: 609204,610498) 28S ribosomal protein   (137 aa)
 initn: 929 init1: 929 opt: 929  Z-score: 1279.1  bits: 242.5 E(85289): 1.6e-64
Smith-Waterman score: 929; 100.0% identity (100.0% similar) in 137 aa overlap (1-137:1-137)

               10        20        30        40        50        60
pF1KB3 MVHLTTLLCKAYRGGHLTIRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MVHLTTLLCKAYRGGHLTIRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 HGEKLVALNLDRIRHWIGCGAHLSKPMEKLLGLAGFFPLHPMMITNAERLRRKRAREVLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 HGEKLVALNLDRIRHWIGCGAHLSKPMEKLLGLAGFFPLHPMMITNAERLRRKRAREVLL
               70        80        90       100       110       120

              130       
pF1KB3 ASQKTDAEATDTEATET
       :::::::::::::::::
NP_057 ASQKTDAEATDTEATET
              130       

>>XP_016871794 (OMIM: 609204,610498) PREDICTED: 28S ribo  (99 aa)
 initn: 654 init1: 654 opt: 654  Z-score: 905.2  bits: 172.8 E(85289): 1.1e-43
Smith-Waterman score: 654; 100.0% identity (100.0% similar) in 93 aa overlap (1-93:1-93)

               10        20        30        40        50        60
pF1KB3 MVHLTTLLCKAYRGGHLTIRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVHLTTLLCKAYRGGHLTIRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 HGEKLVALNLDRIRHWIGCGAHLSKPMEKLLGLAGFFPLHPMMITNAERLRRKRAREVLL
       :::::::::::::::::::::::::::::::::                           
XP_016 HGEKLVALNLDRIRHWIGCGAHLSKPMEKLLGLKYSHVF                     
               70        80        90                              

              130       
pF1KB3 ASQKTDAEATDTEATET




137 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:59:18 2016 done: Sat Nov  5 04:59:18 2016
 Total Scan time:  4.880 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]