FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3416, 137 aa
  1>>>pF1KB3416 137 - 137 aa - 137 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2768+/-0.000624; mu= 10.6038+/- 0.037
 mean_var=53.0221+/-10.637, 0's: 0 Z-trim(110.6): 8  B-trim: 2 in 1/48
 Lambda= 0.176135
 statistics sampled from 11717 (11720) to 11717 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.36), width:  16
 Scan time:  1.760

The best scores are:                                      opt bits E(32554)
CCDS7323.1 MRPS16 gene_id:51021|Hs108|chr10        ( 137)  929 243.3 3.6e-65


>>CCDS7323.1 MRPS16 gene_id:51021|Hs108|chr10             (137 aa)
 initn: 929 init1: 929 opt: 929  Z-score: 1283.6  bits: 243.3 E(32554): 3.6e-65
Smith-Waterman score: 929; 100.0% identity (100.0% similar) in 137 aa overlap (1-137:1-137)

               10        20        30        40        50        60
pF1KB3 MVHLTTLLCKAYRGGHLTIRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MVHLTTLLCKAYRGGHLTIRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 HGEKLVALNLDRIRHWIGCGAHLSKPMEKLLGLAGFFPLHPMMITNAERLRRKRAREVLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 HGEKLVALNLDRIRHWIGCGAHLSKPMEKLLGLAGFFPLHPMMITNAERLRRKRAREVLL
               70        80        90       100       110       120

              130       
pF1KB3 ASQKTDAEATDTEATET
       :::::::::::::::::
CCDS73 ASQKTDAEATDTEATET
              130       




137 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:59:17 2016 done: Sat Nov  5 04:59:17 2016
 Total Scan time:  1.760 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]