FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3401, 249 aa
  1>>>pF1KB3401 249 - 249 aa - 249 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5464+/-0.000389; mu= 9.9364+/- 0.024
 mean_var=131.0987+/-26.105, 0's: 0 Z-trim(116.9): 9  B-trim: 810 in 2/53
 Lambda= 0.112015
 statistics sampled from 28407 (28408) to 28407 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.333), width:  16
 Scan time:  7.320

The best scores are:                                      opt bits E(85289)
NP_001001 (OMIM: 180460) 40S ribosomal protein S6  ( 249) 1602 269.8 3.2e-72


>>NP_001001 (OMIM: 180460) 40S ribosomal protein S6 [Hom  (249 aa)
 initn: 1602 init1: 1602 opt: 1602  Z-score: 1417.5  bits: 269.8 E(85289): 3.2e-72
Smith-Waterman score: 1602; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249)

               10        20        30        40        50        60
pF1KB3 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 FPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 IPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 TPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRAS
              190       200       210       220       230       240

                
pF1KB3 TSKSESSQK
       :::::::::
NP_001 TSKSESSQK
                




249 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:58:40 2016 done: Sat Nov  5 04:58:41 2016
 Total Scan time:  7.320 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]