FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3401, 249 aa
  1>>>pF1KB3401 249 - 249 aa - 249 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5803+/-0.000917; mu= 9.8833+/- 0.055
 mean_var=125.9005+/-24.755, 0's: 0 Z-trim(110.0): 7  B-trim: 148 in 1/49
 Lambda= 0.114304
 statistics sampled from 11279 (11281) to 11279 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.347), width:  16
 Scan time:  2.470

The best scores are:                                      opt bits E(32554)
CCDS6492.1 RPS6 gene_id:6194|Hs108|chr9            ( 249) 1602 274.8 3.7e-74


>>CCDS6492.1 RPS6 gene_id:6194|Hs108|chr9                 (249 aa)
 initn: 1602 init1: 1602 opt: 1602  Z-score: 1444.8  bits: 274.8 E(32554): 3.7e-74
Smith-Waterman score: 1602; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249)

               10        20        30        40        50        60
pF1KB3 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 FPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 FPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 IPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 IPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 TPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 TPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRAS
              190       200       210       220       230       240

                
pF1KB3 TSKSESSQK
       :::::::::
CCDS64 TSKSESSQK
                




249 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:58:39 2016 done: Sat Nov  5 04:58:40 2016
 Total Scan time:  2.470 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]