FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3398, 151 aa
  1>>>pF1KB3398 151 - 151 aa - 151 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0912+/-0.000324; mu= 12.6732+/- 0.020
 mean_var=61.9848+/-12.359, 0's: 0 Z-trim(115.5): 23  B-trim: 211 in 1/52
 Lambda= 0.162904
 statistics sampled from 26043 (26058) to 26043 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.306), width:  16
 Scan time:  5.330

The best scores are:                                      opt bits E(85289)
NP_001008 (OMIM: 180476) 40S ribosomal protein S13 ( 151)  978 237.9 4.8e-63


>>NP_001008 (OMIM: 180476) 40S ribosomal protein S13 [Ho  (151 aa)
 initn: 978 init1: 978 opt: 978  Z-score: 1252.9  bits: 237.9 E(85289): 4.8e-63
Smith-Waterman score: 978; 100.0% identity (100.0% similar) in 151 aa overlap (1-151:1-151)

               10        20        30        40        50        60
pF1KB3 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES
               70        80        90       100       110       120

              130       140       150 
pF1KB3 RIHRLARYYKTKRVLPPNWKYESSTASALVA
       :::::::::::::::::::::::::::::::
NP_001 RIHRLARYYKTKRVLPPNWKYESSTASALVA
              130       140       150 




151 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:58:03 2016 done: Sat Nov  5 04:58:03 2016
 Total Scan time:  5.330 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]