FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3313, 553 aa
  1>>>pF1KB3313 553 - 553 aa - 553 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9843+/-0.00104; mu= 12.2504+/- 0.062
 mean_var=154.8290+/-30.913, 0's: 0 Z-trim(108.9): 33  B-trim: 250 in 1/52
 Lambda= 0.103074
 statistics sampled from 10470 (10496) to 10470 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.322), width:  16
 Scan time:  3.520

The best scores are:                                      opt bits E(32554)
CCDS10524.1 GLYR1 gene_id:84656|Hs108|chr16        ( 553) 3668 557.8 1.3e-158
CCDS81945.1 GLYR1 gene_id:84656|Hs108|chr16        ( 547) 3600 547.6 1.4e-155
CCDS5414.1 HIBADH gene_id:11112|Hs108|chr7         ( 336)  381 68.8 1.2e-11


>>CCDS10524.1 GLYR1 gene_id:84656|Hs108|chr16             (553 aa)
 initn: 3668 init1: 3668 opt: 3668  Z-score: 2961.4  bits: 557.8 E(32554): 1.3e-158
Smith-Waterman score: 3668; 100.0% identity (100.0% similar) in 553 aa overlap (1-553:1-553)

               10        20        30        40        50        60
pF1KB3 MAAVSLRLGDLVWGKLGRYPPWPGKIVNPPKDLKKPRGKKCFFVKFFGTEDHAWIKVEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAAVSLRLGDLVWGKLGRYPPWPGKIVNPPKDLKKPRGKKCFFVKFFGTEDHAWIKVEQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 KPYHAHKEEMIKINKGKRFQQAVDAVEEFLRRAKGKDQTSSHNSSDDKNRRNSSEERSRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KPYHAHKEEMIKINKGKRFQQAVDAVEEFLRRAKGKDQTSSHNSSDDKNRRNSSEERSRP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 NSGDEKRKLSLSEGKVKKNMGEGKKRVSSGSSERGSKSPLKRAQEQSPRKRGRPPKDEKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NSGDEKRKLSLSEGKVKKNMGEGKKRVSSGSSERGSKSPLKRAQEQSPRKRGRPPKDEKD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 LTIPESSTVKGMMAGPMAAFKWQPTASEPVKDADPHFHHFLLSQTEKPAVCYQAITKKLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LTIPESSTVKGMMAGPMAAFKWQPTASEPVKDADPHFHHFLLSQTEKPAVCYQAITKKLK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 ICEEETGSTSIQAADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ICEEETGSTSIQAADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 EKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDM
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 STVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 STVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAM
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 GKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASI
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 FLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQS
              490       500       510       520       530       540

              550   
pF1KB3 DNDMSAVYRAYIH
       :::::::::::::
CCDS10 DNDMSAVYRAYIH
              550   

>>CCDS81945.1 GLYR1 gene_id:84656|Hs108|chr16             (547 aa)
 initn: 2028 init1: 2028 opt: 3600  Z-score: 2906.8  bits: 547.6 E(32554): 1.4e-155
Smith-Waterman score: 3600; 98.9% identity (98.9% similar) in 553 aa overlap (1-553:1-547)

               10        20        30        40        50        60
pF1KB3 MAAVSLRLGDLVWGKLGRYPPWPGKIVNPPKDLKKPRGKKCFFVKFFGTEDHAWIKVEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MAAVSLRLGDLVWGKLGRYPPWPGKIVNPPKDLKKPRGKKCFFVKFFGTEDHAWIKVEQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 KPYHAHKEEMIKINKGKRFQQAVDAVEEFLRRAKGKDQTSSHNSSDDKNRRNSSEERSRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KPYHAHKEEMIKINKGKRFQQAVDAVEEFLRRAKGKDQTSSHNSSDDKNRRNSSEERSRP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 NSGDEKRKLSLSEGKVKKNMGEGKKRVSSGSSERGSKSPLKRAQEQSPRKRGRPPKDEKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 NSGDEKRKLSLSEGKVKKNMGEGKKRVSSGSSERGSKSPLKRAQEQSPRKRGRPPKDEKD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 LTIPESSTVKGMMAGPMAAFKWQPTASEPVKDADPHFHHFLLSQTEKPAVCYQAITKKLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LTIPESSTVKGMMAGPMAAFKWQPTASEPVKDADPHFHHFLLSQTEKPAVCYQAITKKLK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 ICEEETGSTSIQAADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ICEEETGSTSIQAADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 EKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDM
       ::      ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EK------EGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDM
                    310       320       330       340       350    

              370       380       390       400       410       420
pF1KB3 STVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 STVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAM
          360       370       380       390       400       410    

              430       440       450       460       470       480
pF1KB3 GKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASI
          420       430       440       450       460       470    

              490       500       510       520       530       540
pF1KB3 FLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 FLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQS
          480       490       500       510       520       530    

              550   
pF1KB3 DNDMSAVYRAYIH
       :::::::::::::
CCDS81 DNDMSAVYRAYIH
          540       

>>CCDS5414.1 HIBADH gene_id:11112|Hs108|chr7              (336 aa)
 initn: 324 init1: 324 opt: 381  Z-score: 322.5  bits: 68.8 E(32554): 1.2e-11
Smith-Waterman score: 381; 25.3% identity (56.9% similar) in 304 aa overlap (253-549:25-328)

            230       240       250       260       270       280  
pF1KB3 SQTEKPAVCYQAITKKLKICEEETGSTSIQAADSTAVNGSITPTDKKIGFLGLGLMGSGI
                                     :.. .:: .  . .   .::.::: ::. .
CCDS54       MAASLRLLGAASGLRYWSRRLRPAAGSFAAVCSRSVASKTPVGFIGLGNMGNPM
                     10        20        30        40        50    

            290       300       310       320       330       340  
pF1KB3 VSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVL
       ..::.: :. . ...   . :  : . : ..  .::.:.   :  .. .     : .   
CCDS54 AKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYS
           60        70        80        90       100       110    

            350       360       370       380       390       400  
pF1KB3 GPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVIL
       : .:.:. .. :.  .: ::.:  .  :::. . . :. :..:::::.   . .: :...
CCDS54 GANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFM
          120       130       140       150       160       170    

            410       420       430       440       450       460  
pF1KB3 AAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTG
       ..: .  .   .  .  ::..  . : ::..    .  ::. .  :   ::...:.   :
CCDS54 VGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLG
          180       190       200       210       220       230    

            470         480       490            500       510     
pF1KB3 QSQQTLLDILNQ--GQLASIFLDQKCQNILQG-----NFKPDFYLKYIQKDLRLAIALGD
        . . :  :::.  :.  :    .   ....:     :..  :    . ::: ::   . 
CCDS54 LDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSAT
          240       250       260       270       280       290    

         520       530       540       550       
pF1KB3 AVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAYIH    
       ... :  ... :...:.   :   : .:.:.:..        
CCDS54 STKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREEETF
          300       310       320       330      




553 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:54:48 2016 done: Sat Nov  5 04:54:49 2016
 Total Scan time:  3.520 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]