Result of FASTA (ccds) for
pF1KB3312
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3312, 824 aa
1>>>pF1KB3312 824 - 824 aa - 824 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.7265+/-0.00118; mu= -0.6632+/- 0.070
mean_var=192.4522+/-39.077, 0's: 0 Z-trim(107.3): 46 B-trim: 7 in 1/51
Lambda= 0.092451
statistics sampled from 9456 (9482) to 9456 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.291), width: 16
Scan time: 4.400
The best scores are: opt bits E(32554)
CCDS11509.1 CDC27 gene_id:996|Hs108|chr17 ( 824) 5442 739.2 6.6e-213
CCDS74090.1 CDC27 gene_id:996|Hs108|chr17 ( 823) 5424 736.8 3.5e-212
CCDS45720.1 CDC27 gene_id:996|Hs108|chr17 ( 830) 5420 736.3 5.1e-212
>>CCDS11509.1 CDC27 gene_id:996|Hs108|chr17 (824 aa)
initn: 5442 init1: 5442 opt: 5442 Z-score: 3935.8 bits: 739.2 E(32554): 6.6e-213
Smith-Waterman score: 5442; 100.0% identity (100.0% similar) in 824 aa overlap (1-824:1-824)
10 20 30 40 50 60
pF1KB3 MTVLQEPVQAAIWQALNHYAYRDAVFLAERLYAEVHSEEALFLLATCYYRSGKAYKAYRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MTVLQEPVQAAIWQALNHYAYRDAVFLAERLYAEVHSEEALFLLATCYYRSGKAYKAYRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LKGHSCTTPQCKYLLAKCCVDLSKLAEGEQILSGGVFNKQKSHDDIVTEFGDSACFTLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LKGHSCTTPQCKYLLAKCCVDLSKLAEGEQILSGGVFNKQKSHDDIVTEFGDSACFTLSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 LGHVYCKTDRLAKGSECYQKSLSLNPFLWSPFESLCEIGEKPDPDQTFKFTSLQNFSNCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LGHVYCKTDRLAKGSECYQKSLSLNPFLWSPFESLCEIGEKPDPDQTFKFTSLQNFSNCL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 PNSCTTQVPNHSLSHRQPETVLTETPQDTIELNRLNLESSNSKYSLNTDSSVSYIDSAVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PNSCTTQVPNHSLSHRQPETVLTETPQDTIELNRLNLESSNSKYSLNTDSSVSYIDSAVI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 SPDTVPLGTGTSILSKQVQNKPKTGRSLLGGPAALSPLTPSFGILPLETPSPGDGSYLQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SPDTVPLGTGTSILSKQVQNKPKTGRSLLGGPAALSPLTPSFGILPLETPSPGDGSYLQN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 YTNTPPVIDVPSTGAPSKKSVARIGQTGTKSVFSQSGNSREVTPILAQTQSSGPQTSTTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YTNTPPVIDVPSTGAPSKKSVARIGQTGTKSVFSQSGNSREVTPILAQTQSSGPQTSTTP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 QVLSPTITSPPNALPRRSSRLFTSDSSTTKENSKKLKMKFPPKIPNRKTKSKTNKGGITQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QVLSPTITSPPNALPRRSSRLFTSDSSTTKENSKKLKMKFPPKIPNRKTKSKTNKGGITQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 PNINDSLEITKLDSSIISEGKISTITPQIQAFNLQKAAAEGLMSLLREMGKGYLALCSYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PNINDSLEITKLDSSIISEGKISTITPQIQAFNLQKAAAEGLMSLLREMGKGYLALCSYN
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 CKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAERIFSEVRRIENYRVEGMEIYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 CKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAERIFSEVRRIENYRVEGMEIYS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 TTLWHLQKDVALSVLSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TTLWHLQKDVALSVLSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNY
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 AYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 ALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYK
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 SALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAID
730 740 750 760 770 780
790 800 810 820
pF1KB3 KRYLPDDEEPITQEEQIMGTDESQESSMTDADDTQLHAAESDEF
::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KRYLPDDEEPITQEEQIMGTDESQESSMTDADDTQLHAAESDEF
790 800 810 820
>>CCDS74090.1 CDC27 gene_id:996|Hs108|chr17 (823 aa)
initn: 3163 init1: 3006 opt: 5424 Z-score: 3922.9 bits: 736.8 E(32554): 3.5e-212
Smith-Waterman score: 5424; 99.9% identity (99.9% similar) in 824 aa overlap (1-824:1-823)
10 20 30 40 50 60
pF1KB3 MTVLQEPVQAAIWQALNHYAYRDAVFLAERLYAEVHSEEALFLLATCYYRSGKAYKAYRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MTVLQEPVQAAIWQALNHYAYRDAVFLAERLYAEVHSEEALFLLATCYYRSGKAYKAYRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LKGHSCTTPQCKYLLAKCCVDLSKLAEGEQILSGGVFNKQKSHDDIVTEFGDSACFTLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LKGHSCTTPQCKYLLAKCCVDLSKLAEGEQILSGGVFNKQKSHDDIVTEFGDSACFTLSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 LGHVYCKTDRLAKGSECYQKSLSLNPFLWSPFESLCEIGEKPDPDQTFKFTSLQNFSNCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LGHVYCKTDRLAKGSECYQKSLSLNPFLWSPFESLCEIGEKPDPDQTFKFTSLQNFSNCL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 PNSCTTQVPNHSLSHRQPETVLTETPQDTIELNRLNLESSNSKYSLNTDSSVSYIDSAVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PNSCTTQVPNHSLSHRQPETVLTETPQDTIELNRLNLESSNSKYSLNTDSSVSYIDSAVI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 SPDTVPLGTGTSILSKQVQNKPKTGRSLLGGPAALSPLTPSFGILPLETPSPGDGSYLQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SPDTVPLGTGTSILSKQVQNKPKTGRSLLGGPAALSPLTPSFGILPLETPSPGDGSYLQN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 YTNTPPVIDVPSTGAPSKKSVARIGQTGTKSVFSQSGNSREVTPILAQTQSSGPQTSTTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 YTNTPPVIDVPSTGAPSKKSVARIGQTGTKSVFSQSGNSREVTPILAQTQSSGPQTSTTP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 QVLSPTITSPPNALPRRSSRLFTSDSSTTKENSKKLKMKFPPKIPNRKTKSKTNKGGITQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QVLSPTITSPPNALPRRSSRLFTSDSSTTKENSKKLKMKFPPKIPNRKTKSKTNKGGITQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 PNINDSLEITKLDSSIISEGKISTITPQIQAFNLQKAAAEGLMSLLREMGKGYLALCSYN
::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
CCDS74 PNINDSLEITKLDSSIISEGKISTITPQIQAFNLQKAAA-GLMSLLREMGKGYLALCSYN
430 440 450 460 470
490 500 510 520 530 540
pF1KB3 CKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAERIFSEVRRIENYRVEGMEIYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 CKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAERIFSEVRRIENYRVEGMEIYS
480 490 500 510 520 530
550 560 570 580 590 600
pF1KB3 TTLWHLQKDVALSVLSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TTLWHLQKDVALSVLSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNY
540 550 560 570 580 590
610 620 630 640 650 660
pF1KB3 AYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 AYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQK
600 610 620 630 640 650
670 680 690 700 710 720
pF1KB3 ALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYK
660 670 680 690 700 710
730 740 750 760 770 780
pF1KB3 SALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAID
720 730 740 750 760 770
790 800 810 820
pF1KB3 KRYLPDDEEPITQEEQIMGTDESQESSMTDADDTQLHAAESDEF
::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KRYLPDDEEPITQEEQIMGTDESQESSMTDADDTQLHAAESDEF
780 790 800 810 820
>>CCDS45720.1 CDC27 gene_id:996|Hs108|chr17 (830 aa)
initn: 3308 init1: 3308 opt: 5420 Z-score: 3919.9 bits: 736.3 E(32554): 5.1e-212
Smith-Waterman score: 5420; 99.3% identity (99.3% similar) in 830 aa overlap (1-824:1-830)
10 20 30 40 50 60
pF1KB3 MTVLQEPVQAAIWQALNHYAYRDAVFLAERLYAEVHSEEALFLLATCYYRSGKAYKAYRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MTVLQEPVQAAIWQALNHYAYRDAVFLAERLYAEVHSEEALFLLATCYYRSGKAYKAYRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LKGHSCTTPQCKYLLAKCCVDLSKLAEGEQILSGGVFNKQKSHDDIVTEFGDSACFTLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LKGHSCTTPQCKYLLAKCCVDLSKLAEGEQILSGGVFNKQKSHDDIVTEFGDSACFTLSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 LGHVYCKTDRLAKGSECYQKSLSLNPFLWSPFESLCEIGEKPDPDQTFKFTSLQNFSNCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LGHVYCKTDRLAKGSECYQKSLSLNPFLWSPFESLCEIGEKPDPDQTFKFTSLQNFSNCL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 PNSCTTQVPNHSLSHRQPETVLTETPQDTIELNRLNLESSNSKYSLNTDSSVSYIDSAVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PNSCTTQVPNHSLSHRQPETVLTETPQDTIELNRLNLESSNSKYSLNTDSSVSYIDSAVI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 SPDTVPLGTGTSILSKQVQNKPKTGRSLLGGPAALSPLTPSFGILPLETPSPGDGSYLQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SPDTVPLGTGTSILSKQVQNKPKTGRSLLGGPAALSPLTPSFGILPLETPSPGDGSYLQN
250 260 270 280 290 300
310 320 330 340 350
pF1KB3 YTNTPPVIDVPSTGAPSKK------SVARIGQTGTKSVFSQSGNSREVTPILAQTQSSGP
::::::::::::::::::: :::::::::::::::::::::::::::::::::::
CCDS45 YTNTPPVIDVPSTGAPSKKTFRVLQSVARIGQTGTKSVFSQSGNSREVTPILAQTQSSGP
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB3 QTSTTPQVLSPTITSPPNALPRRSSRLFTSDSSTTKENSKKLKMKFPPKIPNRKTKSKTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QTSTTPQVLSPTITSPPNALPRRSSRLFTSDSSTTKENSKKLKMKFPPKIPNRKTKSKTN
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB3 KGGITQPNINDSLEITKLDSSIISEGKISTITPQIQAFNLQKAAAEGLMSLLREMGKGYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KGGITQPNINDSLEITKLDSSIISEGKISTITPQIQAFNLQKAAAEGLMSLLREMGKGYL
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB3 ALCSYNCKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAERIFSEVRRIENYRVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ALCSYNCKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAERIFSEVRRIENYRVE
490 500 510 520 530 540
540 550 560 570 580 590
pF1KB3 GMEIYSTTLWHLQKDVALSVLSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GMEIYSTTLWHLQKDVALSVLSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAI
550 560 570 580 590 600
600 610 620 630 640 650
pF1KB3 QVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLA
610 620 630 640 650 660
660 670 680 690 700 710
pF1KB3 EMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLF
670 680 690 700 710 720
720 730 740 750 760 770
pF1KB3 ANEKYKSALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ANEKYKSALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQ
730 740 750 760 770 780
780 790 800 810 820
pF1KB3 IKEAIDKRYLPDDEEPITQEEQIMGTDESQESSMTDADDTQLHAAESDEF
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IKEAIDKRYLPDDEEPITQEEQIMGTDESQESSMTDADDTQLHAAESDEF
790 800 810 820 830
824 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 12:48:22 2016 done: Thu Nov 3 12:48:23 2016
Total Scan time: 4.400 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]