Result of FASTA (omim) for
pF1KB3294
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3294, 950 aa
1>>>pF1KB3294 950 - 950 aa - 950 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.4460+/-0.000427; mu= 11.1299+/- 0.026
mean_var=128.0949+/-25.988, 0's: 0 Z-trim(115.6): 415 B-trim: 2178 in 2/53
Lambda= 0.113320
statistics sampled from 25666 (26132) to 25666 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.306), width: 16
Scan time: 14.160
The best scores are: opt bits E(85289)
NP_061723 (OMIM: 606307) protocadherin alpha-1 iso ( 950) 6178 1022.2 0
NP_113598 (OMIM: 606307) protocadherin alpha-1 iso ( 807) 5133 851.3 0
NP_061728 (OMIM: 606308) protocadherin alpha-2 iso ( 948) 5111 847.7 0
NP_061729 (OMIM: 606309) protocadherin alpha-3 iso ( 950) 5078 842.3 0
NP_061734 (OMIM: 606314) protocadherin alpha-8 iso ( 950) 5066 840.4 0
NP_061730 (OMIM: 606310) protocadherin alpha-4 iso ( 947) 5033 835.0 0
NP_061732 (OMIM: 606312) protocadherin alpha-6 iso ( 950) 5033 835.0 0
NP_061727 (OMIM: 606319) protocadherin alpha-13 is ( 950) 5009 831.1 0
NP_114063 (OMIM: 606315) protocadherin alpha-9 iso ( 950) 5006 830.6 0
NP_061725 (OMIM: 606317) protocadherin alpha-11 is ( 949) 5000 829.6 0
NP_061724 (OMIM: 606316) protocadherin alpha-10 is ( 948) 4878 809.6 0
NP_061731 (OMIM: 606311) protocadherin alpha-5 iso ( 936) 4094 681.5 5.5e-195
NP_113684 (OMIM: 606308) protocadherin alpha-2 iso ( 808) 4073 678.0 5.2e-194
NP_113683 (OMIM: 606308) protocadherin alpha-2 iso ( 824) 4073 678.0 5.3e-194
NP_113689 (OMIM: 606311) protocadherin alpha-5 iso ( 816) 4059 675.7 2.6e-193
NP_113685 (OMIM: 606309) protocadherin alpha-3 iso ( 824) 4033 671.5 4.9e-192
NP_114062 (OMIM: 606314) protocadherin alpha-8 iso ( 814) 4028 670.6 8.6e-192
NP_113688 (OMIM: 606310) protocadherin alpha-4 iso ( 798) 3998 665.7 2.5e-190
NP_114036 (OMIM: 606312) protocadherin alpha-6 iso ( 803) 3991 664.6 5.6e-190
NP_061733 (OMIM: 606313) protocadherin alpha-7 iso ( 937) 3991 664.6 6.4e-190
NP_114071 (OMIM: 606319) protocadherin alpha-13 is ( 807) 3972 661.5 4.9e-189
NP_054724 (OMIM: 606315) protocadherin alpha-9 iso ( 842) 3961 659.7 1.8e-188
NP_114067 (OMIM: 606317) protocadherin alpha-11 is ( 810) 3956 658.9 3e-188
NP_114040 (OMIM: 606313) protocadherin alpha-7 iso ( 789) 3952 658.2 4.6e-188
NP_061726 (OMIM: 606318) protocadherin alpha-12 is ( 941) 3867 644.4 8.1e-184
NP_114065 (OMIM: 606316) protocadherin alpha-10 is ( 844) 3839 639.8 1.8e-182
NP_114070 (OMIM: 606318) protocadherin alpha-12 is ( 792) 3836 639.3 2.4e-182
NP_113599 (OMIM: 606307) protocadherin alpha-1 iso ( 686) 3443 575.0 4.6e-163
NP_114037 (OMIM: 606312) protocadherin alpha-6 iso ( 686) 2577 433.4 1.9e-120
NP_114066 (OMIM: 606316) protocadherin alpha-10 is ( 685) 2563 431.1 9.3e-120
NP_002579 (OMIM: 603627) protocadherin gamma-C3 is ( 934) 2023 342.9 4.6e-93
NP_115778 (OMIM: 603627) protocadherin gamma-C3 is ( 863) 1985 336.7 3.2e-91
NP_114089 (OMIM: 606321) protocadherin alpha-C2 is ( 884) 1950 330.9 1.7e-89
NP_115265 (OMIM: 603059) protocadherin gamma-A12 i ( 820) 1925 326.8 2.7e-88
NP_003726 (OMIM: 603059) protocadherin gamma-A12 i ( 932) 1925 326.9 3e-88
NP_061736 (OMIM: 606297) protocadherin gamma-A10 i ( 936) 1918 325.7 6.7e-88
NP_114479 (OMIM: 606297) protocadherin gamma-A10 i ( 850) 1917 325.5 6.9e-88
NP_003727 (OMIM: 603058) protocadherin gamma-B4 is ( 923) 1911 324.6 1.5e-87
NP_061747 (OMIM: 606301) protocadherin gamma-B3 is ( 929) 1908 324.1 2.1e-87
NP_114476 (OMIM: 606294) protocadherin gamma-A7 is ( 817) 1904 323.4 2.9e-87
NP_061743 (OMIM: 606294) protocadherin gamma-A7 is ( 932) 1904 323.4 3.3e-87
NP_061758 (OMIM: 606341) protocadherin beta-15 pre ( 787) 1892 321.4 1.1e-86
NP_114480 (OMIM: 606298) protocadherin gamma-A11 i ( 837) 1891 321.3 1.3e-86
NP_061738 (OMIM: 606289) protocadherin gamma-A2 is ( 932) 1891 321.3 1.4e-86
NP_061737 (OMIM: 606298) protocadherin gamma-A11 i ( 935) 1891 321.3 1.4e-86
NP_114398 (OMIM: 606289) protocadherin gamma-A2 is ( 823) 1884 320.1 2.8e-86
NP_114477 (OMIM: 606295) protocadherin gamma-A8 is ( 932) 1881 319.7 4.4e-86
NP_054723 (OMIM: 606295) protocadherin gamma-A8 is ( 820) 1876 318.8 7e-86
NP_061744 (OMIM: 606296) protocadherin gamma-A9 is ( 932) 1870 317.9 1.5e-85
NP_114478 (OMIM: 606296) protocadherin gamma-A9 is ( 828) 1868 317.5 1.8e-85
>>NP_061723 (OMIM: 606307) protocadherin alpha-1 isoform (950 aa)
initn: 6178 init1: 6178 opt: 6178 Z-score: 5462.9 bits: 1022.2 E(85289): 0
Smith-Waterman score: 6178; 100.0% identity (100.0% similar) in 950 aa overlap (1-950:1-950)
10 20 30 40 50 60
pF1KB3 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB3 NTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 NTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB3 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
850 860 870 880 890 900
910 920 930 940 950
pF1KB3 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
910 920 930 940 950
>>NP_113598 (OMIM: 606307) protocadherin alpha-1 isoform (807 aa)
initn: 5133 init1: 5133 opt: 5133 Z-score: 4540.6 bits: 851.3 E(85289): 0
Smith-Waterman score: 5133; 100.0% identity (100.0% similar) in 798 aa overlap (1-798:1-798)
10 20 30 40 50 60
pF1KB3 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB3 NTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
::::::::::::::::::
NP_113 NTSERNEQPEANLDLSGNVSPTFEFWL
790 800
>>NP_061728 (OMIM: 606308) protocadherin alpha-2 isoform (948 aa)
initn: 5112 init1: 4073 opt: 5111 Z-score: 4520.2 bits: 847.7 E(85289): 0
Smith-Waterman score: 5111; 83.3% identity (92.2% similar) in 950 aa overlap (1-950:1-948)
10 20 30 40 50 60
pF1KB3 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV
:. : : : :: :: ::::::::::::::.::.::::::::::::.:::::::: :::
NP_061 MASSIRRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE
::::::::: : :::::::::::::::::::::::: :::::::.:.:.::::::::::
NP_061 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL
:.:::::::::.: . : .::::::.::::.:::.:::::.::::.: :: :..: :
NP_061 VEVKDINDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP
:..:.::::.:: : : : :::::: :..:::.::::::::: :::..:: ::::::: :
NP_061 DIQANDELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG
: :.::.:.:::.:::::::. ::::::::: :.:.:.:. : .: :: :: .: ::
NP_061 TFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR
::: ::::::.::::::: :.:::.: ::.:::. .:..:.:::.::...::: :::
NP_061 EIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPIS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
:.: :.::::::::::::::.::.::::: :::::::::::::::::::::::::::.:.
NP_061 ENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
::::::::::::::::::. ::.::::::::::::::::::::::::::::::::::::
NP_061 YELVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
:::::::::::::::::::::::::.:::::::::::::::::::::.::::::::::::
NP_061 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD
:::::::::::::::::::::::::::::.: . :::::::: ::::::::::::::::
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT
:::::::::::: ..:.::::::::::::::::::.::::: :.:::::::::::::::
NP_061 SGYNAWLSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
:::::::::::::::::::::: ::.:: ::.::::::::::::::::::::::.:::::
NP_061 ATATVLVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL
::::::::::: .:::::::::::.:::: ::::::::::.: :::::::::::.:: .
NP_061 LRCSVPPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGP
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB3 NTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
...:... :. . :.::::::::::::::::::::::::::::::::::::::::::
NP_061 DSAEEKQLSES--EYVGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
790 800 810 820 830
850 860 870 880 890 900
pF1KB3 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
840 850 860 870 880 890
910 920 930 940 950
pF1KB3 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
900 910 920 930 940
>>NP_061729 (OMIM: 606309) protocadherin alpha-3 isoform (950 aa)
initn: 5078 init1: 5078 opt: 5078 Z-score: 4491.0 bits: 842.3 E(85289): 0
Smith-Waterman score: 5078; 81.8% identity (92.5% similar) in 950 aa overlap (1-950:1-950)
10 20 30 40 50 60
pF1KB3 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV
:.:: : ::. ::: :::::: ::::::::::. :::::::::::.::::::::::::
NP_061 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE
::::::::: : :::::::::::::::::::::::: :::::::::.:.::::::::::
NP_061 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL
:.::::::: ::: . .:: ::: .::: .:::.:::::.:.::::.:. ..::.:
NP_061 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP
::. .:: ::: : :.: :.::.::. .::.:: ::::::: ::..: :::::::::::
NP_061 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG
:....:.:.:::.. :::::.:.::.: ::::: ....::.. .: :: ::..: .:
NP_061 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR
.: . ..:.::.:::::::.:.:::.::::.:: ::....:.:::.:::.. :: ::.
NP_061 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
::.:::::::::.:::::::.:::::::: ::::::::::::::::::::: :::::.:.
NP_061 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
::::::::::::::::::: :::::::::::::::.: ::::::::::::::::::::::
NP_061 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
:::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::
NP_061 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD
:::::::::::::::::::::::::: ::::: ::::::::: ::::::::::::::::
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT
:::::::::::::..::::::::::::::::::::.:::.: :.::::::::::::.::
NP_061 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
::::::::::::::::::::.::.:..::::::::::::::.::::::::::::::::::
NP_061 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL
::::.::::: :::::::::::.:::: ::::.:::::.:: ::::::::::.: :
NP_061 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB3 NTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
. .:.:. ....:::..::::::::::::::::::::::::::::::::::::::::::
NP_061 ISRDREEKQDVDVDLSAKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB3 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
850 860 870 880 890 900
910 920 930 940 950
pF1KB3 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
910 920 930 940 950
>>NP_061734 (OMIM: 606314) protocadherin alpha-8 isoform (950 aa)
initn: 5066 init1: 5066 opt: 5066 Z-score: 4480.4 bits: 840.4 E(85289): 0
Smith-Waterman score: 5066; 81.1% identity (91.8% similar) in 950 aa overlap (1-950:1-950)
10 20 30 40 50 60
pF1KB3 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV
: . :: ::. ::: :::::::.:::::::::.::::::::::::.::::::::::::
NP_061 MDYHWRGELGSWRLLLLLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE
::::::::: :::::::.:::::::::::::::::: :::::::::.:.:::::::::.
NP_061 PRLFRVASKRHRDLLEVSLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL
:.:::.:::::::: ..: .:. :::. .::::.:::.:::.:::..::: :: ::: :
NP_061 VEVKDVNDNPPVFRVKDQKLFVSESRMPDSRFPLEGASDADVGANSVLTYRLSSHDYFML
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP
::..... .: . : ::: ::::..: ::.::::::::::: :::.::.::::::::::
NP_061 DVNSKNDENKLVELVLRKSLDREDAPAHHLFLTATDGGKPELTGTVQLLVTVLDVNDNAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG
:.:. :.:...:.. ::: : ::::: :::.:: . .::.: . . ..:..: ..:
NP_061 TFEQSEYEVRIFENADNGTTVIKLNASDPDEGANGAISYSFNSLVETMVIDHFSIDRNTG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR
:: . .::.:. . :.: . :.::: :::..:: :::..:: :::.::.:.::: ::.:
NP_061 EIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
::: ..::::::.:.: ::::::::::::::::::::::::::::::::::::::: .:.
NP_061 EDAQFGTVIALISVNDLDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRERVSA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
::::::::::::::::::: .:::::::::::::::::::::::::::::::::::::::
NP_061 YELVVTARDGGSPSLWATASLSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
::::::::::::::::::::::.::.:.:::.::::::::::::::::::::::::::::
NP_061 DADAQENALVSYSLVERRVGERSLSSYISVHTESGKVYALQPLDHEELELLQFQVSARDA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD
:::::::::::::::::::::::::: :::::: ::.:.:::: ::::::::::::::::
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLEPRVGGTGGAASKLVPRSVGAGHVVAKVRAVDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT
:::::::::::::::.. ::::::::::::::::::::::: :.:::::::::::::::
NP_061 SGYNAWLSYELQPAASSPRIPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPALT
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
::::::::::::::::::::: :.:: :::::::::::::::::::::::::::::::::
NP_061 ATATVLVSLVESGQAPKASSRQSAGVLGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL
::::. ::::. ::::::::::.:::: :::. :::::.::::::::::::: : :.:
NP_061 LRCSALPTEGGCRAGKPTLVCSSAVGSWSYSQQQPQRVCSGEGPPKTDLMAFSPCLPPDL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB3 NTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
.. . .:. . :.: . .::::::::::::::::::::::::::::::::::::::::::
NP_061 GSVDVGEEQDLNVDHGLKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB3 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
850 860 870 880 890 900
910 920 930 940 950
pF1KB3 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
910 920 930 940 950
>>NP_061730 (OMIM: 606310) protocadherin alpha-4 isoform (947 aa)
initn: 3999 init1: 3999 opt: 5033 Z-score: 4451.2 bits: 835.0 E(85289): 0
Smith-Waterman score: 5033; 81.7% identity (92.1% similar) in 950 aa overlap (1-950:1-947)
10 20 30 40 50 60
pF1KB3 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV
: :: .: .: ::: ::::::::.:.::::::. :::::::::::.::::::::::::
NP_061 MEFSWGSGQESRRLLLLLLLLAAWEAGNGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE
::::::::: . :::::::::::::::::::::::. :::::::::.:.:::::::::.
NP_061 PRLFRVASKGRGGLLEVNLQNGILFVNSRIDREELCRRSAECSIHLEVIVDRPLQVFHVD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL
:.:.::::::::: . .. . : ::: :.::::.:::.::::: :::::: :::..::::
NP_061 VEVRDINDNPPVFPATQKNLSIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFSL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP
. .::: :.: : ::: :::::.::. :.::::::::::: :::.:::::::.:::::
NP_061 EKPPDDELVKGLGLILRKSLDREEAPEIFLVLTATDGGKPELTGTVQLLITVLDANDNAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG
::...:.:.:::.. ::::: ::::: :::.::..:.::.. :: ... ::..: .:
NP_061 AFDRTIYKVRLLENVPNGTLVIKLNASDLDEGLNGDIVYSFSNDISPNVKSKFHIDPITG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR
.: . .:.::.::::: :...:::. :.:.::.:.:.: : :::.:.: :: ::::
NP_061 QIIVKGYIDFEESKSYEIIVEGIDKGQLPLSGHCRVIVEVEDNNDNVPDLEFKSLSLPIR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
:::::.::::::.:::.: :.:: ::::: ::::::::::::::::::::::::::.:.
NP_061 EDAPLGTVIALISVSDKDMGVNGLVTCSLTSHVPFKLVSTFKNYYSLVLDSALDRESVSA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_061 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
:::::::::::::::::::::::::.:::::::::::::::::::::::::::::.::::
NP_061 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVTARDA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD
:::::::::::::::::::::::::::::.::: :::::::: ::.:::::::::::::
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGGTGGAVSELVPWSVGVGHVVAKVRAVDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT
:::::::::::::..::::::::::::::::::::.:::.: :.:::::::::::::::
NP_061 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPALT
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
:::::::::::::::::::::: ::..::.::::::::::::::::::::::::::::::
NP_061 ATATVLVSLVESGQAPKASSRALVGAVGPDAALVDVNVYLIIAICAVSSLLVLTLLLYTA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL
::::. ::::: .:::::::::::.:::: ::::: ::::.:::::::::::::.: :
NP_061 LRCSALPTEGACAPGKPTLVCSSAVGSWSYSQQRRPRVCSGEGPPKTDLMAFSPSL-P--
730 740 750 760 770
790 800 810 820 830 840
pF1KB3 NTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
.. .:..: ... . ..::::::::::::::::::::::::::::::::::::::::::
NP_061 DSRDREDQLQTTEESFAKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
780 790 800 810 820 830
850 860 870 880 890 900
pF1KB3 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
840 850 860 870 880 890
910 920 930 940 950
pF1KB3 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
900 910 920 930 940
>>NP_061732 (OMIM: 606312) protocadherin alpha-6 isoform (950 aa)
initn: 5033 init1: 5033 opt: 5033 Z-score: 4451.2 bits: 835.0 E(85289): 0
Smith-Waterman score: 5033; 80.9% identity (92.1% similar) in 950 aa overlap (1-950:1-950)
10 20 30 40 50 60
pF1KB3 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV
:::. . :: . ::: :::::::.:::::::::.::::::::::::.::::::::::::
NP_061 MVFTPEDRLGKQCLLLPLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE
:::::.::: ..:::::::::::::::::::::::: :::::::::.:.:::::::::.
NP_061 PRLFRMASKDREDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL
:.:.:::::::.: .:: ..: :::: .: ::.:::.:::.:.:..::: :: :.::.:
NP_061 VEVRDINDNPPLFPVEEQRVLIYESRLPDSVFPLEGASDADVGSNSILTYKLSSSEYFGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP
::. ... .:.. : :.: :::::.: .:.::::::::::: :::.::.::::::::::
NP_061 DVKINSDDNKQIGLLLKKSLDREEAPAHNLFLTATDGGKPELTGTVQLLVTVLDVNDNAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG
:.:. :.:...:.. ::: : ::::: :::.:: . .::.: .. . ..:..: ..:
NP_061 TFEQSEYEVRIFENADNGTTVIRLNASDRDEGANGAISYSFNSLVAAMVIDHFSIDRNTG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR
:: . .::.:. . :.: . :.::: :::..:: :::..:: :::.::.:.::: ::.:
NP_061 EIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
::: ..::::::.:.: ::::::::.::: :::::::::::::::::::::::::::.:.
NP_061 EDAQFGTVIALISVNDLDSGANGQVNCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
::::::::::::::::::: .::::::.::::::::::::::::::::::::::::::::
NP_061 YELVVTARDGGSPSLWATASLSVEVADMNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
:::::::::::::::::::::::::.:.::::::::::::::::::::::::::::::::
NP_061 DADAQENALVSYSLVERRVGERALSSYISVHAESGKVYALQPLDHEELELLQFQVSARDA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD
::::::::::::::::::::::::::::::::: ::::::::: .:::.:::::::::::
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVSELVPRSLGAGQVVAKVRAVDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT
::::::::::::: :..::.::::::::::::::::::::: :.:::::::::::::::
NP_061 SGYNAWLSYELQPPASSARFPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPALT
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
:::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::
NP_061 ATATVLVSLVESGQAPKASSRASVGAAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL
::::.:::::: . :::::::::.:::: ::::::::::.::::: :::::::.:::
NP_061 LRCSAPPTEGACTADKPTLVCSSAVGSWSYSQQRRQRVCSGEGPPKMDLMAFSPSLSPCP
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB3 NTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
. :. . : : ...::::::::::::::::::::::::::::::::::::::::::
NP_061 IMMGKAENQDLNEDHDAKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB3 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
850 860 870 880 890 900
910 920 930 940 950
pF1KB3 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
910 920 930 940 950
>>NP_061727 (OMIM: 606319) protocadherin alpha-13 isofor (950 aa)
initn: 5009 init1: 5009 opt: 5009 Z-score: 4430.0 bits: 831.1 E(85289): 0
Smith-Waterman score: 5009; 81.2% identity (91.2% similar) in 950 aa overlap (1-950:1-950)
10 20 30 40 50 60
pF1KB3 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV
:. : .:: :.::::::.:::::.::::::::.::::::::::::.::::::::::::
NP_061 MLSSWQGGPRPRQLLLWLLILAAWETGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE
::::::::: : :::::::::::::::::::::::: :::::::::.:.::::::::::
NP_061 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL
:::.:::::::.: .. :.: ::: ..:::..::.:::::.:. ::: :.:.:::.:
NP_061 VKVRDINDNPPIFPESKKRIIIAESRPPETRFPLDGASDADIGVNSALTYRLDPNDYFTL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP
:.. : : .:: : ::: ::::: : :::::.::::::: :::.::::.::::::::
NP_061 DAQNSLEQMSSLSLVLRKTLDREEIQEHSLLLTASDGGKPELTGTVQLLITILDVNDNAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG
: :.::.: .::.. ::::: :::.: :.:.::..:.:: . . : .. ..:
NP_061 EFYQSVYKVTVLENAFNGTLVIKLNATDPDDGTNGDIVYSFRRPVWPAVVYAFTINPNNG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR
::: :::.:: : :::.:.:::::. ::..:: .::.::::::::::...::: ::::
NP_061 EIRTKGKLDFEEKKLYEISVEAVDKGNIPMAGHCTLLVEVLDVNDNAPEVTITSLSLPIR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
::. :..::::.:::::::.::::::.: ::::::::::.::::::::::::::::.:.
NP_061 EDTQPSAIIALISVSDRDSGSNGQVTCTLTPHVPFKLVSTYKNYYSLVLDSALDRESVSA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
::::::::::::::::::: ::: :::::::::::::::::::::::::::::::::::.
NP_061 YELVVTARDGGSPSLWATASVSVGVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
:::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::.
NP_061 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD
::::::::::::::::::::::::::.: .:.. :.::::.:: ::::::::::::::::
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLTPGAGSAGGTVSELMPRSVGAGHVVAKVRAVDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT
:::::::::::: :: ::::::::::::::::::: :::.: ..:::::::::::::::
NP_061 SGYNAWLSYELQLAAVGARIPFRVGLYTGEISTTRPLDEVDAPHHRLLVLVKDHGEPALT
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
::::::.:::::::::.::::::.:..:::::::::::::::::::::::::::::::::
NP_061 ATATVLLSLVESGQAPQASSRASAGAVGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL
::::.:::::: .::::::::::: :::: ::::: ::::.::: :::::::::.: : :
NP_061 LRCSAPPTEGACAPGKPTLVCSSAAGSWSYSQQRRPRVCSGEGPHKTDLMAFSPSLPPCL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB3 NTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
...: . : : . . .::::::::::::::::::::::::::::::::::::::::::
NP_061 GSAEGTGQREEDSECLKEPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB3 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
850 860 870 880 890 900
910 920 930 940 950
pF1KB3 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
910 920 930 940 950
>>NP_114063 (OMIM: 606315) protocadherin alpha-9 isoform (950 aa)
initn: 5006 init1: 5006 opt: 5006 Z-score: 4427.4 bits: 830.6 E(85289): 0
Smith-Waterman score: 5006; 80.6% identity (91.7% similar) in 950 aa overlap (1-950:1-950)
10 20 30 40 50 60
pF1KB3 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELV
:..: :: .. ::: ::.:: : :::::::::.::::.:::::::.::::::::::::
NP_114 MLYSSRGDPEGQPLLLSLLILAMWVVGSGQLHYSVPEEAEHGTFVGRIAQDLGLELAELV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 PRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHVE
::::.. :: . :::::::::::::::::::::::: :::::::::.:.:::::::::.
NP_114 PRLFQLDSKGRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 VKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSL
:.::::::::::: . .. .:: ::: :.::::.:::.::::: :::::: :::..:: :
NP_114 VEVKDINDNPPVFPATQKNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 DVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAP
:: .:.. : : : ::: ::::::::::::::::::::::: :::.::::::: :::::
NP_114 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 LFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG
.::...: :.: :... :::: :::: :::.::....::.: .: ::. ::..: ::
NP_114 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIR
: .: ..:.::.....: :.::::: ::...:: .::.:.:::::::.:.. .: .:..
NP_114 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTLLVEVVDVNDNAPQLTIKTLSVPVK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 EDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLSV
::: :.::::::.: : :. ::::::::: ::::::::::.::::::::: ::::::.:.
NP_114 EDAQLGTVIALISVIDLDADANGQVTCSLTPHVPFKLVSTYKNYYSLVLDRALDRESVSA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::
NP_114 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 DADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
::::::::::::::::::.:::.::.::::::::::::::::::::::::::::::::::
NP_114 DADAQENALVSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD
::::::::::::::::::::::::::.::. :: :::::.: : :::: ::.::::::::
NP_114 GVPPLGSNVTLQVFVLDENDNAPALLTPRMRGTDGAVSEMVLRSVGAGVVVGKVRAVDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALT
::::::::::::: ...: ::::::::::::::::.:::.: : :::::::::::::::
NP_114 SGYNAWLSYELQPETASASIPFRVGLYTGEISTTRALDETDAPRQRLLVLVKDHGEPALT
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 ATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
:::::::::::::::::.:::::::..:::..:::::::::::::::::::::::::::.
NP_114 ATATVLVSLVESGQAPKSSSRASVGATGPEVTLVDVNVYLIIAICAVSSLLVLTLLLYTV
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 LRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSL
::::. :::: .:::::::::::.:::: ::::::::::.:: :::::::::::::
NP_114 LRCSAMPTEGECAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEGKQKTDLMAFSPGLSPCA
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB3 NTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
...::. .: :. : .:.::::::::::::::::::::::::::::::::::::::::::
NP_114 GSTERTGEPSASSDSTGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB3 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
850 860 870 880 890 900
910 920 930 940 950
pF1KB3 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
910 920 930 940 950
>>NP_061725 (OMIM: 606317) protocadherin alpha-11 isofor (949 aa)
initn: 4995 init1: 3729 opt: 5000 Z-score: 4422.1 bits: 829.6 E(85289): 0
Smith-Waterman score: 5000; 81.9% identity (91.7% similar) in 948 aa overlap (3-950:4-949)
10 20 30 40 50
pF1KB3 MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAEL
:.::: ::. : :::::: :::::::::::. :::::::::::.:::::::::::
NP_061 MFGFQRRG-LGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAEL
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 VPRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHV
: :::::::::: :::::::::::::::::::::::: :::::::::.:.:::::::::
NP_061 VQRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 EVKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFS
.:.::::::::::: ::: ..: ::. .::::.:::.:::: :::::: :: ..:::
NP_061 NVEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB3 LDVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNA
:: .. . : : : :.: ::::.::::.::::::::::::: :::.::. :::::::
NP_061 LDSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDND
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB3 PLFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSS
: ::.. :.: :.:..:. ::: :::.: ::::::::..:. : :. . .. : .:...
NP_061 PEFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNN
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB3 GEIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPI
::.:. :::::.: :.:.:.:.:::.:::..:: : :..::.:::.::.::::: ::.
NP_061 GEVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPV
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB3 REDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLS
:::: :::::::.:::::::.:::::::: ::::::::::::::::::::::::::..
NP_061 REDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVW
360 370 380 390 400 410
420 430 440 450 460 470
pF1KB3 VYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 AYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
420 430 440 450 460 470
480 490 500 510 520 530
pF1KB3 RDADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARD
:::::::::::::::::::.:.::::.:::::::::::::::::::::::::::::::::
NP_061 RDADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARD
480 490 500 510 520 530
540 550 560 570 580 590
pF1KB3 AGVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDA
::::::.::::::::::::::::::::: ..:.. :::..:::: :::::::::::::::
NP_061 AGVPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDA
540 550 560 570 580 590
600 610 620 630 640 650
pF1KB3 DSGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPAL
::::::::::::::::::.:::::::::::::::::.::::: :.::::::::::::::
NP_061 DSGYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPAL
600 610 620 630 640 650
660 670 680 690 700 710
pF1KB3 TATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYT
::::::::::::::::::::::. .:.:.:::::::::::::::::.:::::::::::::
NP_061 TATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYT
660 670 680 690 700 710
720 730 740 750 760 770
pF1KB3 ALRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPS
:: :. ::::: .::::::::: :.:::: :::::::::: :::::::::::::.: .
NP_061 ALWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLG
720 730 740 750 760 770
780 790 800 810 820 830
pF1KB3 LNTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQW
:: :..:. : . . :.:::::::::::::::::::::::::::::::::::::::::
NP_061 LNKEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQW
780 790 800 810 820 830
840 850 860 870 880 890
pF1KB3 PTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 PTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISI
840 850 860 870 880 890
900 910 920 930 940 950
pF1KB3 RQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 RQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
900 910 920 930 940
950 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 12:45:05 2016 done: Thu Nov 3 12:45:07 2016
Total Scan time: 14.160 Total Display time: 0.400
Function used was FASTA [36.3.4 Apr, 2011]